=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== r-cran-luminescence-0.9.8/man/plot_GrowthCurve.Rd-242- x = x, r-cran-luminescence-0.9.8/man/plot_GrowthCurve.Rd:243: y = eval(temp$Formula), r-cran-luminescence-0.9.8/man/plot_GrowthCurve.Rd-244- type = "l" ############################################## r-cran-luminescence-0.9.8/man/calc_gSGC.Rd-56-\strong{\verb{@info}}\cr r-cran-luminescence-0.9.8/man/calc_gSGC.Rd:57:`$ call`` (\link{call}) the original function call r-cran-luminescence-0.9.8/man/calc_gSGC.Rd-58-} ############################################## r-cran-luminescence-0.9.8/R/verify_SingleGrainData.R-66-#' **Element** \tab **Type** \tab **Description**\cr r-cran-luminescence-0.9.8/R/verify_SingleGrainData.R:67:#' `$unique_pairs` \tab `data.frame` \tab the unique position and grain pairs \cr r-cran-luminescence-0.9.8/R/verify_SingleGrainData.R:68:#' `$selection_id` \tab `numeric` \tab the selection as record ID \cr r-cran-luminescence-0.9.8/R/verify_SingleGrainData.R:69:#' `$selection_full` \tab `data.frame` \tab implemented models used in the baSAR-model core \cr r-cran-luminescence-0.9.8/R/verify_SingleGrainData.R-70-#' } ############################################## r-cran-luminescence-0.9.8/R/CW2pHMi.R-69-#' \tabular{ll}{ r-cran-luminescence-0.9.8/R/CW2pHMi.R:70:#' `$CW2pHMi.x.t` \tab: transformed time values \cr r-cran-luminescence-0.9.8/R/CW2pHMi.R:71:#' `$CW2pHMi.method` \tab: used method for the production of the new data points r-cran-luminescence-0.9.8/R/CW2pHMi.R-72-#' } ############################################## r-cran-luminescence-0.9.8/R/CW2pHMi.R-76-#' \tabular{ll}{ r-cran-luminescence-0.9.8/R/CW2pHMi.R:77:#' `$x` \tab: time\cr r-cran-luminescence-0.9.8/R/CW2pHMi.R:78:#' `$y.t` \tab: transformed count values\cr r-cran-luminescence-0.9.8/R/CW2pHMi.R:79:#' `$x.t` \tab: transformed time values \cr r-cran-luminescence-0.9.8/R/CW2pHMi.R:80:#' `$method` \tab: used method for the production of the new data points r-cran-luminescence-0.9.8/R/CW2pHMi.R-81-#' } ############################################## r-cran-luminescence-0.9.8/R/analyse_baSAR.R-289-#' **Element** \tab **Type** \tab **Description**\cr r-cran-luminescence-0.9.8/R/analyse_baSAR.R:290:#' `$summary` \tab `data.frame` \tab statistical summary, including the central dose \cr r-cran-luminescence-0.9.8/R/analyse_baSAR.R:291:#' `$mcmc` \tab `mcmc` \tab [coda::mcmc.list] object including raw output \cr r-cran-luminescence-0.9.8/R/analyse_baSAR.R:292:#' `$models` \tab `character` \tab implemented models used in the baSAR-model core \cr r-cran-luminescence-0.9.8/R/analyse_baSAR.R:293:#' `$input_object` \tab `data.frame` \tab summarising table (same format as the XLS-file) including, e.g., Lx/Tx values\cr r-cran-luminescence-0.9.8/R/analyse_baSAR.R:294:#' `$removed_aliquots` \tab `data.frame` \tab table with removed aliquots (e.g., NaN, or Inf Lx/Tx values). If nothing was removed `NULL` is returned r-cran-luminescence-0.9.8/R/analyse_baSAR.R-295-#' } ############################################## r-cran-luminescence-0.9.8/R/analyse_baSAR.R-917- if(!is.null(function_arguments.new$aliquot_range)){ r-cran-luminescence-0.9.8/R/analyse_baSAR.R:918: aliquot_range <- eval(function_arguments.new$aliquot_range) r-cran-luminescence-0.9.8/R/analyse_baSAR.R-919- } ############################################## r-cran-luminescence-0.9.8/R/analyse_baSAR.R-922- if(!is.null(function_arguments.new$method_control)){ r-cran-luminescence-0.9.8/R/analyse_baSAR.R:923: method_control <- eval(function_arguments.new$method_control) r-cran-luminescence-0.9.8/R/analyse_baSAR.R-924- } ############################################## r-cran-luminescence-0.9.8/R/analyse_baSAR.R-927- if(!is.null(function_arguments.new$baSAR_model)){ r-cran-luminescence-0.9.8/R/analyse_baSAR.R:928: baSAR_model <- eval(function_arguments.new$baSAR_model) r-cran-luminescence-0.9.8/R/analyse_baSAR.R-929- } ############################################## r-cran-luminescence-0.9.8/R/analyse_baSAR.R-2098- if(!is.null(function_arguments$source_doserate)){ r-cran-luminescence-0.9.8/R/analyse_baSAR.R:2099: source_doserate <- eval(function_arguments$source_doserate) r-cran-luminescence-0.9.8/R/analyse_baSAR.R-2100- ############################################## r-cran-luminescence-0.9.8/R/analyse_Al2O3C_Measurement.R-90-#' **Element** \tab **Type** \tab **Description**\cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_Measurement.R:91:#' `$data` \tab `data.frame` \tab the estimated equivalent dose \cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_Measurement.R:92:#' `$data_table` \tab `data.frame` \tab full dose and signal table \cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_Measurement.R-93-#' `test_parameters` \tab `data.frame` \tab results with test paramaters \cr ############################################## r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R-168-#' **DATA.OBJECT** \tab **TYPE** \tab **DESCRIPTION** \cr r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:169:#' `..$De` : \tab `data.frame` \tab Table with De values \cr r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:170:#' `..$De.MC` : \tab `numeric` \tab Table with De values from MC runs \cr r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:171:#' `..$Fit` : \tab [nls] or [lm] \tab object from the fitting for `EXP`, `EXP+LIN` and `EXP+EXP`. r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R-172-#' In case of a resulting linear fit when using `LIN`, `QDR` or `EXP OR LIN` \cr r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:173:#' `..$Formula` : \tab [expression] \tab Fitting formula as R expression \cr r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:174:#' `..$call` : \tab `call` \tab The original function call\cr r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R-175-#' } ############################################## r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R-221-#' x = x, r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:222:#' y = eval(temp$Formula), r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R-223-#' type = "l" ############################################## r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R-87-#' **Element** \tab **Type** \tab **Description**\cr r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R:88:#' `$data` \tab `matrix` \tab the final fit matrix \cr r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R:89:#' `$start_matrix` \tab `matrix` \tab the start matrix used for the fitting \cr r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R:90:#' `$total_counts` \tab `integer` \tab Photon count sum \cr r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R:91:#' `$fit` \tab `nls` \tab the fit object returned by [minpack.lm::nls.lm] \cr r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R-92-#' } ############################################## r-cran-luminescence-0.9.8/R/CW2pPMi.R-70-#' \tabular{rl}{ r-cran-luminescence-0.9.8/R/CW2pPMi.R:71:#' `$CW2pPMi.x.t` \tab: transformed time values \cr r-cran-luminescence-0.9.8/R/CW2pPMi.R:72:#' `$CW2pPMi.method` \tab: used method for the production of the new data points r-cran-luminescence-0.9.8/R/CW2pPMi.R-73-#' } ############################################## r-cran-luminescence-0.9.8/R/CW2pPMi.R-77-#' \tabular{rl}{ r-cran-luminescence-0.9.8/R/CW2pPMi.R:78:#' `$x` \tab: time\cr r-cran-luminescence-0.9.8/R/CW2pPMi.R:79:#' `$y.t` \tab: transformed count values\cr r-cran-luminescence-0.9.8/R/CW2pPMi.R:80:#' `$x.t` \tab: transformed time values \cr r-cran-luminescence-0.9.8/R/CW2pPMi.R:81:#' `$method` \tab: used method for the production of the new data points r-cran-luminescence-0.9.8/R/CW2pPMi.R-82-#' } ############################################## r-cran-luminescence-0.9.8/R/fit_LMCurve.R-163-#' r-cran-luminescence-0.9.8/R/fit_LMCurve.R:164:#' `.. $data` : [data.frame] with fitting results\cr r-cran-luminescence-0.9.8/R/fit_LMCurve.R:165:#' `.. $fit` : nls ([nls] object)\cr r-cran-luminescence-0.9.8/R/fit_LMCurve.R:166:#' `.. $component.contribution.matrix` : [list] component distribution matrix r-cran-luminescence-0.9.8/R/fit_LMCurve.R-167-#' ############################################## r-cran-luminescence-0.9.8/R/fit_LMCurve.R-170-#' r-cran-luminescence-0.9.8/R/fit_LMCurve.R:171:#' `.. $call` : [call] the original function call r-cran-luminescence-0.9.8/R/fit_LMCurve.R-172-#' ############################################## r-cran-luminescence-0.9.8/R/calc_Lamothe2003.R-50-#' **Element** \tab **Type** \tab **Description**\cr r-cran-luminescence-0.9.8/R/calc_Lamothe2003.R:51:#' `$data` \tab `data.frame` \tab the fading corrected values \cr r-cran-luminescence-0.9.8/R/calc_Lamothe2003.R:52:#' `$fit` \tab `nls` \tab the object returned by the dose response curve fitting \cr r-cran-luminescence-0.9.8/R/calc_Lamothe2003.R-53-#' } ############################################## r-cran-luminescence-0.9.8/R/fit_CWCurve.R-120-#' `fit`: r-cran-luminescence-0.9.8/R/fit_CWCurve.R:121:#' an `nls` object (`$fit`) for which generic R functions are r-cran-luminescence-0.9.8/R/fit_CWCurve.R-122-#' provided, e.g. [summary], [confint], [profile]. For more ############################################## r-cran-luminescence-0.9.8/R/fit_CWCurve.R-129-#' [matrix] containing the values for the component to sum contribution plot r-cran-luminescence-0.9.8/R/fit_CWCurve.R:130:#' (`$component.contribution.matrix`). r-cran-luminescence-0.9.8/R/fit_CWCurve.R-131-#' ############################################## r-cran-luminescence-0.9.8/R/fit_CWCurve.R-144-#' `fit`: r-cran-luminescence-0.9.8/R/fit_CWCurve.R:145:#' an `nls` object (`$fit`) for which generic R functions r-cran-luminescence-0.9.8/R/fit_CWCurve.R-146-#' are provided, e.g. [summary], [confint], [profile]. For more ############################################## r-cran-luminescence-0.9.8/R/fit_CWCurve.R-151-#' `component.contribution.matrix`: [matrix] containing the values r-cran-luminescence-0.9.8/R/fit_CWCurve.R:152:#' for the component to sum contribution plot (`$component.contribution.matrix`).\cr r-cran-luminescence-0.9.8/R/fit_CWCurve.R-153-#' ############################################## r-cran-luminescence-0.9.8/R/plot_FilterCombinations.R-367- if (!is.null(plot_settings$grid)) { r-cran-luminescence-0.9.8/R/plot_FilterCombinations.R:368: graphics::grid(eval(plot_settings$grid)) r-cran-luminescence-0.9.8/R/plot_FilterCombinations.R-369- ############################################## r-cran-luminescence-0.9.8/R/calc_SourceDoseRate.R-16-#' original .BIN file (using e.g., `BINfile <- readBIN2R()` and the slot r-cran-luminescence-0.9.8/R/calc_SourceDoseRate.R:17:#' `BINfile@@METADATA$DATE`) r-cran-luminescence-0.9.8/R/calc_SourceDoseRate.R-18-#' ############################################## r-cran-luminescence-0.9.8/R/plot_RLum.Results.R-1097- if(!is.null(plot.settings$grid)){ r-cran-luminescence-0.9.8/R/plot_RLum.Results.R:1098: grid(eval(plot.settings$grid)) r-cran-luminescence-0.9.8/R/plot_RLum.Results.R-1099- ############################################## r-cran-luminescence-0.9.8/R/scale_GammaDose.R-157-#' **Element** \tab **Type** \tab **Description**\cr r-cran-luminescence-0.9.8/R/scale_GammaDose.R:158:#' `$summary` \tab `data.frame` \tab summary of the model results \cr r-cran-luminescence-0.9.8/R/scale_GammaDose.R:159:#' `$data` \tab `data.frame` \tab the original input data \cr r-cran-luminescence-0.9.8/R/scale_GammaDose.R:160:#' `$dose_rates` \tab `list` \tab two `data.frames` for the scaled and infinite matrix dose rates \cr r-cran-luminescence-0.9.8/R/scale_GammaDose.R:161:#' `$tables` \tab `list` \tab several `data.frames` containing intermediate results \cr r-cran-luminescence-0.9.8/R/scale_GammaDose.R:162:#' `$args` \tab `character` \tab arguments of the call \cr r-cran-luminescence-0.9.8/R/scale_GammaDose.R:163:#' `$call` \tab `call` \tab the original function call \cr r-cran-luminescence-0.9.8/R/scale_GammaDose.R-164-#' } ############################################## r-cran-luminescence-0.9.8/R/plot_DRTResults.R-47-#' - `"mean"` (mean De value), r-cran-luminescence-0.9.8/R/plot_DRTResults.R:48:#' - `"weighted$mean"` (error-weighted mean), r-cran-luminescence-0.9.8/R/plot_DRTResults.R-49-#' - `"median"` (median of the De values), ############################################## r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-76-#' r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R:77:#' `[.. $data : data.frame]`\cr r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-78-#' ############################################## r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-80-#' r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R:81:#' `[.. $fit : nls object]` \cr r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-82-#' ############################################## r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-88-#' r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R:89:#' `[.. $call : call]`\cr r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-90-#' ############################################## r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R-75-#' **DATA.OBJECT** \tab **TYPE** \tab **DESCRIPTION** \cr r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R:76:#' `..$data` : \tab `data.frame` \tab Table with De values \cr r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R:77:#' `..$LnLxTnTx.table` : \tab `data.frame` \tab with the LnLxTnTx values \cr r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R:78:#' `..$rejection.criteria` : \tab [data.frame] \tab rejection criteria \cr r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R:79:#' `..$Formula` : \tab [list] \tab Function used for fitting of the dose response curve \cr r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R:80:#' `..$call` : \tab [call] \tab the original function call r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R-81-#' } ############################################## r-cran-luminescence-0.9.8/R/Luminescence-package.R-779-#' r-cran-luminescence-0.9.8/R/Luminescence-package.R:780:#' The data contain two elements: (a) `$Sequence.Header` is a r-cran-luminescence-0.9.8/R/Luminescence-package.R-781-#' [data.frame] with metadata from the measurement,(b) ############################################## r-cran-luminescence-0.9.8/R/Luminescence-package.R-881-#' \describe{ r-cran-luminescence-0.9.8/R/Luminescence-package.R:882:#' `$BT998`: De and De error values for a fine grain quartz r-cran-luminescence-0.9.8/R/Luminescence-package.R-883-#' sample from a loess section in Rottewitz. r-cran-luminescence-0.9.8/R/Luminescence-package.R-884-#' r-cran-luminescence-0.9.8/R/Luminescence-package.R:885:#' `$CA1`: Single grain De r-cran-luminescence-0.9.8/R/Luminescence-package.R-886-#' and De error values for a coarse grain quartz sample from a fluvial deposit ############################################## r-cran-luminescence-0.9.8/R/Luminescence-package.R-957-#' \describe{ r-cran-luminescence-0.9.8/R/Luminescence-package.R:958:#' `$fading.data`: A named [list] of [data.frame]s, r-cran-luminescence-0.9.8/R/Luminescence-package.R-959-#' each having three named columns (`LxTx, LxTx.error, timeSinceIrradiation`).\cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:960:#' `..$IR50`: Fading data of the IR50 signal.\cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:961:#' `..$IR100`: Fading data of the IR100 signal.\cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:962:#' `..$IR150`: Fading data of the IR150 signal.\cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:963:#' `..$IR225`: Fading data of the IR225 signal.\cr r-cran-luminescence-0.9.8/R/Luminescence-package.R-964-#' r-cran-luminescence-0.9.8/R/Luminescence-package.R-965-#' r-cran-luminescence-0.9.8/R/Luminescence-package.R:966:#' `$equivalentDose.data`: A named of [data.frame]s, r-cran-luminescence-0.9.8/R/Luminescence-package.R-967-#' each having three named columns (`dose, LxTx, LxTx.error`).\cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:968:#' `..$IR50`: Equivalent dose measurement data of the IR50 signal.\cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:969:#' `..$IR100`: Equivalent dose measurement data of the IR100 signal.\cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:970:#' `..$IR150`: Equivalent dose measurement data of the IR150 signal.\cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:971:#' `..$IR225`: Equivalent dose measurement data of the IR225 signal.\cr r-cran-luminescence-0.9.8/R/Luminescence-package.R-972-#' } ############################################## r-cran-luminescence-0.9.8/R/Luminescence-package.R-1049-#' r-cran-luminescence-0.9.8/R/Luminescence-package.R:1050:#' **`$sample_1`** r-cran-luminescence-0.9.8/R/Luminescence-package.R-1051-#' ############################################## r-cran-luminescence-0.9.8/R/Luminescence-package.R-1056-#' r-cran-luminescence-0.9.8/R/Luminescence-package.R:1057:#' **`$sample_2`** r-cran-luminescence-0.9.8/R/Luminescence-package.R-1058-#' ############################################## r-cran-luminescence-0.9.8/R/Luminescence-package.R-1063-#' r-cran-luminescence-0.9.8/R/Luminescence-package.R:1064:#' **`$set_1`** r-cran-luminescence-0.9.8/R/Luminescence-package.R-1065-#' ############################################## r-cran-luminescence-0.9.8/R/Luminescence-package.R-1070-#' r-cran-luminescence-0.9.8/R/Luminescence-package.R:1071:#' **`$set_2`** r-cran-luminescence-0.9.8/R/Luminescence-package.R-1072-#' ############################################## r-cran-luminescence-0.9.8/R/Luminescence-package.R-1081-#' **Element** \tab **Content** \cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:1082:#' `$sample_1` \tab A [data.frame] with 3 columns (depth, intensity, error) \cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:1083:#' `$sample_2` \tab A [data.frame] with 3 columns (depth, intensity, error) \cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:1084:#' `$set_1` \tab A [list] of 4 [data.frame]s, each representing a sample with different ages \cr r-cran-luminescence-0.9.8/R/Luminescence-package.R:1085:#' `$set_2` \tab A [list] of 5 [data.frame]s, each representing a sample with different ages \cr r-cran-luminescence-0.9.8/R/Luminescence-package.R-1086-#' } ############################################## r-cran-luminescence-0.9.8/R/methods_RLum.R-552-#' @export r-cran-luminescence-0.9.8/R/methods_RLum.R:553:`$.RLum.Data.Curve` <- function(x, i) {get_RLum(x, info.object = i)} r-cran-luminescence-0.9.8/R/methods_RLum.R-554- ############################################## r-cran-luminescence-0.9.8/R/methods_RLum.R-562-#' @export r-cran-luminescence-0.9.8/R/methods_RLum.R:563:`$.RLum.Analysis` <- function(x, i) {get_RLum(x, recordType = i)} r-cran-luminescence-0.9.8/R/methods_RLum.R-564- ############################################## r-cran-luminescence-0.9.8/R/methods_RLum.R-566-#' @export r-cran-luminescence-0.9.8/R/methods_RLum.R:567:`$.RLum.Results` <- function(x, i) {get_RLum(x, data.object = i)} ############################################## r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R-118-#' **Element** \tab **Type** \tab **Description**\cr r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R:119:#' `$summary` \tab `data.frame` \tab summary of the fitting results \cr r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R:120:#' `$data` \tab `data.frame` \tab the original input data \cr r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R:121:#' `$fit` \tab `nls` \tab the fitting object produced by [minpack.lm::nlsLM] \cr r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R:122:#' `$args` \tab `character` \tab arguments of the call \cr r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R:123:#' `$call` \tab `call` \tab the original function call \cr r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R-124-#' } ############################################## r-cran-luminescence-0.9.8/R/methods_DRAC.R-243-#' @export r-cran-luminescence-0.9.8/R/methods_DRAC.R:244:`$<-.DRAC.list`<- function(x, name, value) { r-cran-luminescence-0.9.8/R/methods_DRAC.R-245- # this is straightforward; retrieve the index and pass the object ############################################## r-cran-luminescence-0.9.8/R/CW2pLMi.R-70-#' \tabular{rl}{ r-cran-luminescence-0.9.8/R/CW2pLMi.R:71:#' `$CW2pLMi.x.t` \tab: transformed time values \cr r-cran-luminescence-0.9.8/R/CW2pLMi.R:72:#' `$CW2pLMi.method` \tab: used method for the production of the new data points r-cran-luminescence-0.9.8/R/CW2pLMi.R-73-#' } ############################################## r-cran-luminescence-0.9.8/R/calc_gSGC.R-40-#' **`@data`**\cr r-cran-luminescence-0.9.8/R/calc_gSGC.R:41:#' `$ De.value` ([data.frame]) \cr r-cran-luminescence-0.9.8/R/calc_gSGC.R:42:#' `.. $ De` \cr r-cran-luminescence-0.9.8/R/calc_gSGC.R:43:#' `.. $ De.error` \cr r-cran-luminescence-0.9.8/R/calc_gSGC.R:44:#' `.. $ Eta` \cr r-cran-luminescence-0.9.8/R/calc_gSGC.R:45:#' `$ De.MC` ([list]) contains the matrices from the error estimation.\cr r-cran-luminescence-0.9.8/R/calc_gSGC.R:46:#' `$ uniroot` ([list]) contains the [uniroot] outputs of the De estimations\cr r-cran-luminescence-0.9.8/R/calc_gSGC.R-47-#' r-cran-luminescence-0.9.8/R/calc_gSGC.R-48-#' **`@info`**\cr r-cran-luminescence-0.9.8/R/calc_gSGC.R:49:#' `$ call`` ([call]) the original function call r-cran-luminescence-0.9.8/R/calc_gSGC.R-50-#' ############################################## r-cran-luminescence-0.9.8/R/calc_gSGC.R-306- if(!is.null(plot.settings$grid)){ r-cran-luminescence-0.9.8/R/calc_gSGC.R:307: graphics::grid(eval(plot.settings$grid)) r-cran-luminescence-0.9.8/R/calc_gSGC.R-308- ############################################## r-cran-luminescence-0.9.8/R/calc_AverageDose.R-59-#' r-cran-luminescence-0.9.8/R/calc_AverageDose.R:60:#' `[.. $summary : data.frame]`\cr r-cran-luminescence-0.9.8/R/calc_AverageDose.R-61-#' ############################################## r-cran-luminescence-0.9.8/R/calc_AverageDose.R-76-#' r-cran-luminescence-0.9.8/R/calc_AverageDose.R:77:#' `[.. $dstar : matrix]` \cr r-cran-luminescence-0.9.8/R/calc_AverageDose.R-78-#' ############################################## r-cran-luminescence-0.9.8/R/calc_AverageDose.R-80-#' r-cran-luminescence-0.9.8/R/calc_AverageDose.R:81:#' `[.. $hist : list]`\cr r-cran-luminescence-0.9.8/R/calc_AverageDose.R-82-#' ############################################## r-cran-luminescence-0.9.8/R/report_RLum.R-416- if (elements$endpoint[i]) { r-cran-luminescence-0.9.8/R/report_RLum.R:417: table <- tryCatch(eval(parse(text = elements$branch[i])), r-cran-luminescence-0.9.8/R/report_RLum.R-418- error = function(e) { ############################################## r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-234-#' r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R:235:#' `[.. $data : data.frame]` r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-236-#' ############################################## r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-251-#' r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R:252:#' `[.. $De.MC : numeric]` r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-253-#' ############################################## r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-255-#' r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R:256:#' `[.. $test_parameters : data.frame]` r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-257-#' ############################################## r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-268-#' r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R:269:#' `[.. $fit : data.frame]` r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-270-#' ############################################## r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-272-#' r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R:273:#' `[.. $slide : list]` r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-274-#' ############################################## r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R-45-#' **Element** \tab **Type** \tab **Description**\cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R:46:#' `$data` \tab `data.frame` \tab summed apparent dose table \cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R:47:#' `$data_full` \tab `data.frame` \tab full apparent dose table \cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R:48:#' `$fit` \tab `lm` \tab the linear model obtained from fitting \cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R:49:#' `$col.seq` \tab `numeric` \tab the used colour vector \cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R-50-#' } ############################################## r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-67-#' **Element** \tab **Type** \tab **Description**\cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:68:#' `$data` \tab `data.frame` \tab correction value and error \cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:69:#' `$table` \tab `data.frame` \tab table used for plotting \cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:70:#' `$table_mean` \tab `data.frame` \tab table used for fitting \cr r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:71:#' `$fit` \tab `lm` or `nls` \tab the fitting as returned by the function [plot_GrowthCurve] r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-72-#' } ############################################## r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-331- x = x, r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:332: y = eval(GC$Formula) r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-333- ) ############################################## r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-336- x <- 0 r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:337: lines(x = c(-GC$De[1], -GC$De[1]), y = c(eval(GC$Formula), 0), lty = 2, col = "red") r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-338- shape::Arrows( r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-339- x0 = 0, r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:340: y0 = eval(GC$Formula), r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-341- x1 = as.numeric(-GC$De[1]), r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:342: y1 = eval(GC$Formula), r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-343- arr.type = "triangle", ############################################## r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-351- x = -GC$De[1] / 2, r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:352: y = eval(GC$Formula), r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-353- pos = 3, ############################################## r-cran-luminescence-0.9.8/R/use_DRAC.R-32-#' \tabular{lll}{ r-cran-luminescence-0.9.8/R/use_DRAC.R:33:#' `$highlights` \tab [data.frame] \tab summary of 25 most important input/output fields \cr r-cran-luminescence-0.9.8/R/use_DRAC.R:34:#' `$header` \tab [character] \tab HTTP header from the DRAC server response \cr r-cran-luminescence-0.9.8/R/use_DRAC.R:35:#' `$labels` \tab [data.frame] \tab descriptive headers of all input/output fields \cr r-cran-luminescence-0.9.8/R/use_DRAC.R:36:#' `$content` \tab [data.frame] \tab complete DRAC input/output table \cr r-cran-luminescence-0.9.8/R/use_DRAC.R:37:#' `$input` \tab [data.frame] \tab DRAC input table \cr r-cran-luminescence-0.9.8/R/use_DRAC.R:38:#' `$output` \tab [data.frame] \tab DRAC output table \cr r-cran-luminescence-0.9.8/R/use_DRAC.R-39-#' `references`\tab [list] \tab A list of [bibentry]s of used references \cr ############################################## r-cran-luminescence-0.9.8/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then r-cran-luminescence-0.9.8/debian/tests/run-unit-test:7: AUTOPKGTEST_TMP=`mktemp -d /tmp/${debname}-test.XXXXXX` r-cran-luminescence-0.9.8/debian/tests/run-unit-test-8- trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM