=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== dh-r-20201117/README.md-21- dh-r-20201117/README.md:22: * R packages already available in the archive are automatically detected and included in the `${R:Depends}`, `${R:Recommends}` and `${R:Suggests}` substvars dh-r-20201117/README.md-23- * Script `dh-make-R` generates a `debian/` skeleton from an extracted R package tarball ############################################## dh-r-20201117/dh/R.pm-99- say "W: Trying to create a package template for missing debian package for $field:$d. This may take some time."; dh-r-20201117/dh/R.pm:100: print `prepare_missing_cran_package $d`; dh-r-20201117/dh/R.pm-101- } else { ############################################## dh-r-20201117/scripts/create_README.source-17- else dh-r-20201117/scripts/create_README.source:18: rdoc=`echo $1 | sed 's/\.[RDArdat]\+$/.Rd/'` dh-r-20201117/scripts/create_README.source-19- if [ -e $rdoc ] ; then ############################################## dh-r-20201117/scripts/create_README.source-32- if echo $rda | grep -q -e "^\.\./data" -e "^\.\./.*/extdata" ; then dh-r-20201117/scripts/create_README.source:33: rdoc=`GuessDocName "../man/$(basename $rda .rda)"` dh-r-20201117/scripts/create_README.source-34- if [ ! -e "$rdoc" ] ; then dh-r-20201117/scripts/create_README.source-35- # try lower case doc name if nothing else was found dh-r-20201117/scripts/create_README.source:36: rdoc=`GuessDocName "../man/"$(basename $rda .rda | tr 'A-Z' 'a-z')` dh-r-20201117/scripts/create_README.source-37- fi ############################################## dh-r-20201117/scripts/create_README.source-39- # Pick a doc file that is featuring the full name of the binary dh-r-20201117/scripts/create_README.source:40: rdanoext=`basename $rda .rda | sed 's/\.RData$//'` dh-r-20201117/scripts/create_README.source:41: rdoc=`grep -l -w $rdanoext ../man/* | head -n1` dh-r-20201117/scripts/create_README.source-42- fi ############################################## dh-r-20201117/scripts/create_README.source-78-cat <<EOT dh-r-20201117/scripts/create_README.source:79: -- `echo ${DEBFULLNAME}` <`echo ${DEBEMAIL}`> `date -R` dh-r-20201117/scripts/create_README.source-80-EOT ############################################## dh-r-20201117/scripts/dh-make-R-1549-if [ "\$AUTOPKGTEST_TMP" = "" ] ; then dh-r-20201117/scripts/dh-make-R:1550: AUTOPKGTEST_TMP=`mktemp -d /tmp/\${debname}-test.XXXXXX` dh-r-20201117/scripts/dh-make-R-1551- trap "rm -rf \$AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM ############################################## dh-r-20201117/scripts/pkg-r-autopkgtest-22-if [ "$AUTOPKGTEST_TMP" = "" ] ; then dh-r-20201117/scripts/pkg-r-autopkgtest:23: AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkgname}-test.XXXXXX` dh-r-20201117/scripts/pkg-r-autopkgtest-24- trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM ############################################## dh-r-20201117/scripts/prepare_missing_cran_package-3-show_usage () { dh-r-20201117/scripts/prepare_missing_cran_package:4: echo "Usage: `basename $0` <package_name>" dh-r-20201117/scripts/prepare_missing_cran_package-5- echo dh-r-20201117/scripts/prepare_missing_cran_package:6: echo "`basename $0` searches the CRAN and BioConductor repositories for package with the exact name given as a single argument. It will download, unpack, and prepare all the Debian packaging for the requested packages and all those dependencies that are not yet shipping with Debian." dh-r-20201117/scripts/prepare_missing_cran_package-7-} ############################################## dh-r-20201117/scripts/prepare_missing_cran_package-44- retval="" dh-r-20201117/scripts/prepare_missing_cran_package:45: wnpp=`wnpp-check $wnppname | sed 's/^(.* - #\([0-9]\+\)) http.*/\1/'` dh-r-20201117/scripts/prepare_missing_cran_package-46- if [ "$wnpp" != "" ] ; then dh-r-20201117/scripts/prepare_missing_cran_package:47: newversion=`PGPASSWORD="public-udd-mirror" psql --port=5432 --host=public-udd-mirror.xvm.mit.edu --username=public-udd-mirror -t udd -c "select version from new_packages where package = '$wnppname' ;"` dh-r-20201117/scripts/prepare_missing_cran_package-48- if [ "$newversion" != "" ] ; then ############################################## dh-r-20201117/scripts/prepare_missing_cran_package-63-do dh-r-20201117/scripts/prepare_missing_cran_package:64: pkgname=r-${repository}-`echo $cranname | tr '[A-Z]' '[a-z]'` dh-r-20201117/scripts/prepare_missing_cran_package-65- ############################################## dh-r-20201117/scripts/prepare_missing_cran_package-85- if [ "$wnppcheck" = "" ] ; then dh-r-20201117/scripts/prepare_missing_cran_package:86: wnppname="r-bioc-`echo $cranname | tr '[A-Z]' '[a-z]'`" dh-r-20201117/scripts/prepare_missing_cran_package-87- wnppcheck=$( do_wnpp_check ) ############################################## dh-r-20201117/scripts/prepare_missing_cran_package-96-if echo $workdir | grep -q CRAN_prospective ; then dh-r-20201117/scripts/prepare_missing_cran_package:97: basedir=`echo $workdir | sed 's#\(CRAN_prospective\).*#\1#'` dh-r-20201117/scripts/prepare_missing_cran_package-98-else dh-r-20201117/scripts/prepare_missing_cran_package:99: basedir=`dirname $workdir`/CRAN_prospective dh-r-20201117/scripts/prepare_missing_cran_package-100-fi ############################################## dh-r-20201117/scripts/prepare_missing_cran_package-102- dh-r-20201117/scripts/prepare_missing_cran_package:103:for p in "`dirname ${targetdir}`/${cranname}/debian" "$targetdir" dh-r-20201117/scripts/prepare_missing_cran_package-104-do ############################################## dh-r-20201117/scripts/prepare_missing_cran_package-180- BIOCDATA="true" dh-r-20201117/scripts/prepare_missing_cran_package:181: pkgname=r-bioc-`echo $cranname | tr '[A-Z]' '[a-z]'` dh-r-20201117/scripts/prepare_missing_cran_package-182- cp -a debian/watch /tmp/watch_$pkgname dh-r-20201117/scripts/prepare_missing_cran_package-183- fi dh-r-20201117/scripts/prepare_missing_cran_package:184: pkgname=r-bioc-`echo $cranname | tr '[A-Z]' '[a-z]'` dh-r-20201117/scripts/prepare_missing_cran_package-185-fi ############################################## dh-r-20201117/scripts/prepare_missing_cran_package-189-cd .. dh-r-20201117/scripts/prepare_missing_cran_package:190:rm -rf r-cran-`echo $cranname | tr '[A-Z]' '[a-z]'` dh-r-20201117/scripts/prepare_missing_cran_package:191:tarball=`echo $tarball | sed 's#^\.\./##'` dh-r-20201117/scripts/prepare_missing_cran_package-192-if [ ! -r "$tarball" ]; then ############################################## dh-r-20201117/scripts/prepare_missing_cran_package-231-git init dh-r-20201117/scripts/prepare_missing_cran_package:232:#newversion=`echo ../$tarball | sed 's/^.*_\([0-9].*\)\.orig\.tar\..*/\1/'` dh-r-20201117/scripts/prepare_missing_cran_package-233-#gbp import-orig --pristine-tar --upstream-version=$newversion ../$tarball ############################################## dh-r-20201117/scripts/prepare_missing_cran_package-236-git add debian dh-r-20201117/scripts/prepare_missing_cran_package:237:git commit -a -m"Initial packaging by `basename $0`" dh-r-20201117/scripts/prepare_missing_cran_package-238-echo "I: Cleaning up" dh-r-20201117/scripts/prepare_missing_cran_package:239:rm -f ../`readlink ../$tarball` dh-r-20201117/scripts/prepare_missing_cran_package-240-rm -f ../$tarball