data/trimmomatic-0.39+dfsg/versionHistory.txt: ASCII text data/trimmomatic-0.39+dfsg/adapters/TruSeq3-SE.fa: ASCII text data/trimmomatic-0.39+dfsg/adapters/TruSeq2-PE.fa: ASCII text data/trimmomatic-0.39+dfsg/adapters/TruSeq2-SE.fa: ASCII text data/trimmomatic-0.39+dfsg/adapters/TruSeq3-PE-2.fa: ASCII text data/trimmomatic-0.39+dfsg/adapters/NexteraPE-PE.fa: ASCII text data/trimmomatic-0.39+dfsg/adapters/TruSeq3-PE.fa: ASCII text data/trimmomatic-0.39+dfsg/distSrc/LICENSE: ASCII text data/trimmomatic-0.39+dfsg/MANIFEST.MF: ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/Pairomatic.java: C source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/TrimStats.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/fasta/FastaSerializer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/fasta/FastaParser.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/fasta/FastaRecord.java: ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/HeadCropTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/LeadingTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/BarcodeSplitter.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/AvgQualTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/SlidingWindowTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/Trimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/CropTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/ToPhred64Trimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/TrimmerFactory.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/MinLenTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/TrailingTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/MaxLenTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/BaseCountTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/AbstractSingleRecordTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/TailCropTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/MaximumInformationTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/ToPhred33Trimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/trim/IlluminaClippingTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/util/Logger.java: ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/util/ConcatGZIPInputStream.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/util/PositionTrackingInputStream.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/TrimmomaticSE.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/threading/TrimLogWorker.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/threading/ParserWorker.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/threading/BlockOfWork.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/threading/SerializerWorker.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/threading/TrimLogRecord.java: ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/threading/TrimStatsWorker.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/threading/BlockOfRecords.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/fastq/FastqRecord.java: ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/fastq/FastqSerializer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/fastq/PairingValidator.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/fastq/FastqNamePattern.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/fastq/FastqParser.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/TrimmomaticPE.java: Java source, ASCII text, with very long lines data/trimmomatic-0.39+dfsg/src/org/usadellab/trimmomatic/Trimmomatic.java: C source, ASCII text, with very long lines data/trimmomatic-0.39+dfsg/debian/MANIFEST.MF: ASCII text data/trimmomatic-0.39+dfsg/debian/README.Debian: ASCII text data/trimmomatic-0.39+dfsg/debian/README.source: ASCII text data/trimmomatic-0.39+dfsg/debian/README.test: UTF-8 Unicode text data/trimmomatic-0.39+dfsg/debian/TrimmomaticPE.1: troff or preprocessor input, ASCII text, with very long lines data/trimmomatic-0.39+dfsg/debian/bin/TrimmomaticPE: POSIX shell script, ASCII text executable data/trimmomatic-0.39+dfsg/debian/bin/batchTrim: Python script, ASCII text executable, with very long lines data/trimmomatic-0.39+dfsg/debian/changelog: UTF-8 Unicode text data/trimmomatic-0.39+dfsg/debian/compat: ASCII text data/trimmomatic-0.39+dfsg/debian/control: ASCII text data/trimmomatic-0.39+dfsg/debian/copyright: UTF-8 Unicode text data/trimmomatic-0.39+dfsg/debian/docs: ASCII text data/trimmomatic-0.39+dfsg/debian/examples: ASCII text data/trimmomatic-0.39+dfsg/debian/install: ASCII text data/trimmomatic-0.39+dfsg/debian/manifest: ASCII text data/trimmomatic-0.39+dfsg/debian/manpages: ASCII text data/trimmomatic-0.39+dfsg/debian/patches/buildxmlJbzip2.patch: unified diff output, ASCII text data/trimmomatic-0.39+dfsg/debian/patches/remove_jar_version.path: unified diff output, ASCII text data/trimmomatic-0.39+dfsg/debian/patches/search_in_usr_share_trimmomatic.patch: unified diff output, ASCII text data/trimmomatic-0.39+dfsg/debian/patches/series: ASCII text data/trimmomatic-0.39+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/trimmomatic-0.39+dfsg/debian/source/format: ASCII text data/trimmomatic-0.39+dfsg/debian/tests/control: ASCII text data/trimmomatic-0.39+dfsg/debian/tests/run-unit-test: POSIX shell script, ASCII text executable data/trimmomatic-0.39+dfsg/debian/tests/test_data/test_forward.fq: ASCII text data/trimmomatic-0.39+dfsg/debian/tests/test_data/test_reverse.fq: ASCII text data/trimmomatic-0.39+dfsg/debian/tests/test_data/test_single.fq: ASCII text data/trimmomatic-0.39+dfsg/debian/trimmomatic.jlibs: ASCII text data/trimmomatic-0.39+dfsg/debian/trimmomatic.links: ASCII text data/trimmomatic-0.39+dfsg/debian/upstream/edam: ASCII text data/trimmomatic-0.39+dfsg/debian/upstream/metadata: ASCII text data/trimmomatic-0.39+dfsg/debian/watch: ASCII text data/trimmomatic-0.39+dfsg/.pc/.version: ASCII text data/trimmomatic-0.39+dfsg/.pc/.quilt_patches: ASCII text data/trimmomatic-0.39+dfsg/.pc/.quilt_series: ASCII text data/trimmomatic-0.39+dfsg/.pc/applied-patches: ASCII text data/trimmomatic-0.39+dfsg/.pc/buildxmlJbzip2.patch/build.xml: ASCII text data/trimmomatic-0.39+dfsg/.pc/remove_jar_version.path/build.xml: ASCII text data/trimmomatic-0.39+dfsg/.pc/search_in_usr_share_trimmomatic.patch/src/org/usadellab/trimmomatic/trim/IlluminaClippingTrimmer.java: Java source, ASCII text data/trimmomatic-0.39+dfsg/build.xml: ASCII text