data/tombo-1.5.1/.travis.yml: ASCII text data/tombo-1.5.1/LICENSE.md: UTF-8 Unicode text, with very long lines data/tombo-1.5.1/MANIFEST.in: ASCII text data/tombo-1.5.1/ONT_logo.png: PNG image data, 590 x 106, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/README.rst: UTF-8 Unicode text, with very long lines data/tombo-1.5.1/docs/_images/adaptive_forward_pass.png: PNG image data, 2448 x 1826, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/adaptive_half_z_scores.png: PNG image data, 2442 x 1824, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/alt_density_est.png: PNG image data, 2878 x 1828, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/alt_model_comp.png: PNG image data, 3266 x 1382, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/begin_forward_pass.png: PNG image data, 3266 x 1454, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/begin_half_z_scores.png: PNG image data, 3260 x 1454, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/boxplot.png: PNG image data, 2916 x 1162, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/dampened_fraction.png: PDF document, version 1.4 data/tombo-1.5.1/docs/_images/density.png: PNG image data, 2922 x 1164, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/kmer_levels.png: PNG image data, 2618 x 1822, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/model_comp.png: PNG image data, 3264 x 1386, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/old_correction_plot.png: PNG image data, 2874 x 1824, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/outlier_robust_llr.gif: GIF image data, version 87a, 1500 x 1050 data/tombo-1.5.1/docs/_images/per_read_do_novo.png: PNG image data, 3266 x 1472, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/per_read_stat_dist.png: PNG image data, 1420 x 946, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/pre_read_5mC.png: PNG image data, 3264 x 1474, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/quantile.png: PNG image data, 2922 x 1162, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/roc.png: PNG image data, 2738 x 1812, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/sample_comp.png: PNG image data, 3268 x 1382, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/single_samp.png: PNG image data, 3266 x 1396, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/stat_dist.png: PNG image data, 2832 x 1846, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/stat_dist_null.png: PNG image data, 2816 x 1842, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/_images/testing_method_comparison.png: PNG image data, 2714 x 1524, 8-bit/color RGBA, non-interlaced data/tombo-1.5.1/docs/examples.rst: ASCII text, with very long lines data/tombo-1.5.1/docs/filtering.rst: ASCII text, with very long lines data/tombo-1.5.1/docs/index.rst: ASCII text, with very long lines data/tombo-1.5.1/docs/model_training.rst: ASCII text, with very long lines data/tombo-1.5.1/docs/modified_base_detection.rst: LaTeX document, ASCII text, with very long lines data/tombo-1.5.1/docs/plotting.rst: ASCII text, with very long lines data/tombo-1.5.1/docs/resquiggle.rst: ASCII text, with very long lines data/tombo-1.5.1/docs/rna.rst: ASCII text, with very long lines data/tombo-1.5.1/docs/text_output.rst: ASCII text, with very long lines data/tombo-1.5.1/docs/tutorials.rst: ASCII text, with very long lines data/tombo-1.5.1/docs/conf.py: Python script, ASCII text executable data/tombo-1.5.1/scripts/debug_bandwidth.R: ASCII text data/tombo-1.5.1/scripts/debug_est_alt.R: ASCII text data/tombo-1.5.1/scripts/debug_params.R: ASCII text data/tombo-1.5.1/scripts/outlier_robust_llr.R: ASCII text data/tombo-1.5.1/scripts/plot_correction.py: Python script, ASCII text executable data/tombo-1.5.1/scripts/plot_multi_correction.py: Python script, ASCII text executable data/tombo-1.5.1/scripts/plot_single_read.py: Python script, ASCII text executable data/tombo-1.5.1/scripts/test_beta_priors.R: ASCII text data/tombo-1.5.1/scripts/dump_per_read_statistics.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/R_scripts/debugDP.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/debugFit.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/debugRawDP.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotGroupComp.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotKmerDist.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotModelComp.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotMotifStats.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotMultiReadCorr.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotPerReadStats.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotROC.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotROCPerRead.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotReadCorr.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotSigMDS.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotSingleRead.R: ASCII text data/tombo-1.5.1/tombo/R_scripts/plotSingleRun.R: ASCII text data/tombo-1.5.1/tombo/__init__.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/__main__.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/_c_dynamic_programming.pyx: Python script, ASCII text executable data/tombo-1.5.1/tombo/_c_helper.pyx: Python script, ASCII text executable data/tombo-1.5.1/tombo/_default_parameters.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/_event_resquiggle.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/_filter_reads.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/_option_parsers.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/_plot_commands.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/_preprocess.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/_text_output_commands.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/_version.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/resquiggle.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/tests/shell_tests.sh: ASCII text data/tombo-1.5.1/tombo/tombo_helper.py: Python script, ASCII text executable data/tombo-1.5.1/tombo/tombo_models/tombo.DNA.5mC.model: Hierarchical Data Format (version 5) data data/tombo-1.5.1/tombo/tombo_models/tombo.DNA.6mA.model: Hierarchical Data Format (version 5) data data/tombo-1.5.1/tombo/tombo_models/tombo.DNA.CpG.model: Hierarchical Data Format (version 5) data data/tombo-1.5.1/tombo/tombo_models/tombo.DNA.dam.model: Hierarchical Data Format (version 5) data data/tombo-1.5.1/tombo/tombo_models/tombo.DNA.dcm.model: Hierarchical Data Format (version 5) data data/tombo-1.5.1/tombo/tombo_models/tombo.DNA.model: Hierarchical Data Format (version 5) data data/tombo-1.5.1/tombo/tombo_models/tombo.RNA.180mV.model: Hierarchical Data Format (version 5) data data/tombo-1.5.1/tombo/tombo_models/tombo.RNA.200mV.model: Hierarchical Data Format (version 5) data data/tombo-1.5.1/tombo/tombo_models/tombo.RNA.5mC.model: Hierarchical Data Format (version 5) data data/tombo-1.5.1/tombo/tombo_stats.py: Python script, ASCII text executable data/tombo-1.5.1/debian/README.test: UTF-8 Unicode text data/tombo-1.5.1/debian/changelog: ASCII text data/tombo-1.5.1/debian/control: ASCII text data/tombo-1.5.1/debian/copyright: ASCII text data/tombo-1.5.1/debian/createmanpages: POSIX shell script, ASCII text executable data/tombo-1.5.1/debian/patches/2to3.patch: unified diff output, ASCII text data/tombo-1.5.1/debian/patches/mathjax.patch: unified diff output, ASCII text data/tombo-1.5.1/debian/patches/no_future.patch: unified diff output, ASCII text data/tombo-1.5.1/debian/patches/series: ASCII text data/tombo-1.5.1/debian/rules: a /usr/bin/make -f script, ASCII text executable data/tombo-1.5.1/debian/salsa-ci.yml: ASCII text data/tombo-1.5.1/debian/source/format: ASCII text data/tombo-1.5.1/debian/tests/control: ASCII text data/tombo-1.5.1/debian/tests/run-unit-test: Bourne-Again shell script, ASCII text executable data/tombo-1.5.1/debian/tombo-doc.doc-base: ASCII text data/tombo-1.5.1/debian/tombo-doc.install: ASCII text data/tombo-1.5.1/debian/tombo.1: troff or preprocessor input, ASCII text data/tombo-1.5.1/debian/tombo.install: ASCII text data/tombo-1.5.1/debian/tombo.manpages: ASCII text data/tombo-1.5.1/debian/upstream/metadata: ASCII text data/tombo-1.5.1/debian/watch: ASCII text data/tombo-1.5.1/.pc/.version: ASCII text data/tombo-1.5.1/.pc/.quilt_patches: ASCII text data/tombo-1.5.1/.pc/.quilt_series: ASCII text data/tombo-1.5.1/.pc/applied-patches: ASCII text data/tombo-1.5.1/.pc/no_future.patch/setup.py: Python script, ASCII text executable data/tombo-1.5.1/.pc/2to3.patch/scripts/dump_per_read_statistics.py: Python script, ASCII text executable data/tombo-1.5.1/.pc/mathjax.patch/docs/conf.py: Python script, ASCII text executable data/tombo-1.5.1/setup.py: Python script, ASCII text executable