data/staden-io-lib-1.14.13/.gitignore: ASCII text data/staden-io-lib-1.14.13/.gitmodules: ASCII text data/staden-io-lib-1.14.13/.travis.yml: ASCII text data/staden-io-lib-1.14.13/CHANGES: ASCII text data/staden-io-lib-1.14.13/COPYRIGHT: ASCII text data/staden-io-lib-1.14.13/MSVC_includes/sys/param.h: empty data/staden-io-lib-1.14.13/MSVC_includes/sys/time.h: ASCII text data/staden-io-lib-1.14.13/MSVC_includes/unistd.h: empty data/staden-io-lib-1.14.13/README.md: ASCII text data/staden-io-lib-1.14.13/acinclude.m4: M4 macro processor script, ASCII text data/staden-io-lib-1.14.13/bootstrap: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/configure.ac: M4 macro processor script, ASCII text data/staden-io-lib-1.14.13/docs/Hash_File_Format: ASCII text data/staden-io-lib-1.14.13/docs/ZTR_format: ASCII text data/staden-io-lib-1.14.13/io_lib-config.in: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/io_lib.m4: M4 macro processor script, ASCII text data/staden-io-lib-1.14.13/io_lib/Read.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/Read.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/abi.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/alf.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/array.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/array.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/bam.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/bgzip.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/binning.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/binning.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/compress.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/compress.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/compression.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_bambam.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_bambam.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_block_compression.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_codecs.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_codecs.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_decode.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_decode.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_encode.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_encode.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_index.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_io.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_stats.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_structs.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/crc32.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/crc32.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/deflate_interlaced.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/deflate_interlaced.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/dstring.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/dstring.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/error.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/error.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/expFileIO.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/expFileIO.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/find.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/fpoint.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/fpoint.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/jenkins_lookup3.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/jenkins_lookup3.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/mFILE.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/mFILE.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/md5.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/md5.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/misc.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/misc_scf.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/open_trace_file.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/open_trace_file.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/os.h.in: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/plain.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/pooled_alloc.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/pooled_alloc.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/read_alloc.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/read_scf.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/sam_header.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/sam_header.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/scf.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/scf_extras.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/scf_extras.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/scram.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/scram.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/seqIOABI.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/seqIOPlain.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/sff.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/sff.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/srf.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/stdio_hack.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/string_alloc.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/string_alloc.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/strings.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/tar_format.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/thread_pool.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/thread_pool.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/traceType.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/traceType.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/translate.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/translate.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/version.h.in: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/vlen.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/vlen.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/write_scf.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/xalloc.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/xalloc.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/zfio.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/zfio.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/ztr.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/ztr.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/ztr_translate.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_stats.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/hash_table.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/hash_table.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_index.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/cram_io.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/files.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/srf.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/bgzip.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/mach-io.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/mach-io.h: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/seqIOABI.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/seqIOALF.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/bam.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/compression.c: C source, ASCII text data/staden-io-lib-1.14.13/io_lib/Makefile.am: ASCII text data/staden-io-lib-1.14.13/m4/ax_subdirs_configure.m4: M4 macro processor script, ASCII text data/staden-io-lib-1.14.13/m4/ax_with_libdeflate.m4: M4 macro processor script, ASCII text data/staden-io-lib-1.14.13/m4/ax_with_zstd.m4: M4 macro processor script, ASCII text data/staden-io-lib-1.14.13/man/man1/scramble.1: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man1/srf2fasta.1: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man1/srf2fastq.1: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man1/srf_index_hash.1: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man1/srf_info.1: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man1/srf_list.1: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man3/ExperimentFile.3: C source, ASCII text data/staden-io-lib-1.14.13/man/man3/exp2read.3: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man3/fread_reading.3: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man3/fread_scf.3: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man3/fwrite_reading.3: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man3/fwrite_scf.3: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man3/read2exp.3: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man3/read2scf.3: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man3/read_allocate.3: C source, ASCII text data/staden-io-lib-1.14.13/man/man3/read_deallocate.3: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man3/read_reading.3: C source, ASCII text data/staden-io-lib-1.14.13/man/man3/read_scf.3: C source, ASCII text data/staden-io-lib-1.14.13/man/man3/read_scf_header.3: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man3/scf2read.3: C source, ASCII text data/staden-io-lib-1.14.13/man/man3/write_reading.3: C source, ASCII text data/staden-io-lib-1.14.13/man/man3/write_scf.3: C source, ASCII text data/staden-io-lib-1.14.13/man/man3/write_scf_header.3: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/man/man4/Read.4: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/options.mk: makefile script, ASCII text data/staden-io-lib-1.14.13/progs/Makefile.am: ASCII text, with very long lines data/staden-io-lib-1.14.13/progs/append_sff.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/convert_trace.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/cram_dump.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/cram_filter.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/cram_size.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/cram_to_sam.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/extract_fastq.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/extract_qual.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/extract_seq.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/get_comment.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/hash_exp.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/hash_extract.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/hash_list.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/hash_sff.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/hash_tar.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/index_tar.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/makeSCF.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/sam_convert.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/sam_to_cram.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/scf_dump.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/scf_info.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/scf_update.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/scram_flagstat.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/scram_merge.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/scram_pileup.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/scram_pileup.h: C source, ASCII text data/staden-io-lib-1.14.13/progs/scram_test.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/srf2fasta.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/srf_dump_all.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/srf_extract_hash.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/srf_extract_linear.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/srf_filter.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/srf_index_hash.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/srf_info.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/srf_list.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/trace_dump.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/ztr_dump.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/cram_index.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/srf2fastq.c: C source, ASCII text data/staden-io-lib-1.14.13/progs/scramble.c: C source, ASCII text data/staden-io-lib-1.14.13/tests/Makefile.am: ASCII text data/staden-io-lib-1.14.13/tests/compare_sam.pl: Perl script text executable data/staden-io-lib-1.14.13/tests/cram_io.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/tests/cram_io_test.c: C source, ASCII text data/staden-io-lib-1.14.13/tests/data/9827_rand3.cram: CRAM version 3.0 (identified as /tmp/x.cram) data/staden-io-lib-1.14.13/tests/data/9827_rand3.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/staden-io-lib-1.14.13/tests/data/both.info: ASCII text data/staden-io-lib-1.14.13/tests/data/both.run/4_ILLUMINA_GA_BUSTARD_PARAMS.txt: XML 1.0 document, ASCII text data/staden-io-lib-1.14.13/tests/data/both.run/4_ILLUMINA_GA_CHASTITY.txt: ASCII text, with no line terminators data/staden-io-lib-1.14.13/tests/data/both.run/4_ILLUMINA_GA_FIRECREST_PARAMS.txt: XML 1.0 document, ASCII text data/staden-io-lib-1.14.13/tests/data/both.run/4_ILLUMINA_GA_MATRIX_FWD.txt: ASCII text data/staden-io-lib-1.14.13/tests/data/both.run/4_ILLUMINA_GA_PHASING_FWD.txt: ASCII text data/staden-io-lib-1.14.13/tests/data/both.run/4_PROGRAM_ID.txt: ASCII text, with no line terminators data/staden-io-lib-1.14.13/tests/data/both.run/s_4_0133_int.txt: ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/both.run/s_4_0133_nse.txt: ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/both.run/s_4_0133_prb.txt: ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/both.run/s_4_0133_seq.txt: ASCII text data/staden-io-lib-1.14.13/tests/data/both.run/s_4_0133_sig2.txt: ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/both.run/s_4_0134_int.txt: ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/both.run/s_4_0134_nse.txt: ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/both.run/s_4_0134_prb.txt: ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/both.run/s_4_0134_seq.txt: ASCII text data/staden-io-lib-1.14.13/tests/data/both.run/s_4_0134_sig2.txt: ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/both.srf: data data/staden-io-lib-1.14.13/tests/data/c1#bounds.sam: ASCII text data/staden-io-lib-1.14.13/tests/data/c1#clip.sam: ASCII text data/staden-io-lib-1.14.13/tests/data/c1#pad1.sam: ASCII text data/staden-io-lib-1.14.13/tests/data/c1#pad2.sam: ASCII text data/staden-io-lib-1.14.13/tests/data/c1#pad3.sam: Sequence Alignment/Map (SAM), ASCII text data/staden-io-lib-1.14.13/tests/data/c1.fa: ASCII text data/staden-io-lib-1.14.13/tests/data/c1.fa.fai: ASCII text data/staden-io-lib-1.14.13/tests/data/ce#1.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/ce#2.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/ce#5.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/ce#5b.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/ce#5b_java.cram: CRAM version 3.0 (identified as ce#5b.sam) data/staden-io-lib-1.14.13/tests/data/ce#5b_java.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/ce#large_seq.sam: ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/ce#tag_depadded.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/staden-io-lib-1.14.13/tests/data/ce#tag_padded.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/staden-io-lib-1.14.13/tests/data/ce#unmap.sam: ASCII text data/staden-io-lib-1.14.13/tests/data/ce#unmap1.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/staden-io-lib-1.14.13/tests/data/ce#unmap2.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/staden-io-lib-1.14.13/tests/data/ce.fa: ASCII text data/staden-io-lib-1.14.13/tests/data/ce.fa.fai: ASCII text data/staden-io-lib-1.14.13/tests/data/longref.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/staden-io-lib-1.14.13/tests/data/proc.info: ASCII text data/staden-io-lib-1.14.13/tests/data/proc.srf: data data/staden-io-lib-1.14.13/tests/data/proc.srf.indexed: data data/staden-io-lib-1.14.13/tests/data/raw.info: ASCII text data/staden-io-lib-1.14.13/tests/data/raw.srf: data data/staden-io-lib-1.14.13/tests/data/slx-C.fasta: ASCII text data/staden-io-lib-1.14.13/tests/data/slx-C.fastq: ASCII text data/staden-io-lib-1.14.13/tests/data/slx.fasta: ASCII text data/staden-io-lib-1.14.13/tests/data/slx.fastq: ASCII text data/staden-io-lib-1.14.13/tests/data/tag_aux#aux.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/staden-io-lib-1.14.13/tests/data/tag_aux#aux_java.cram: CRAM version 3.0 (identified as aux#aux.sam) data/staden-io-lib-1.14.13/tests/data/tag_aux#aux_java.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/tag_aux#special.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/staden-io-lib-1.14.13/tests/data/tag_aux#values1.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 117 data/staden-io-lib-1.14.13/tests/data/tag_aux#values2.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 117 data/staden-io-lib-1.14.13/tests/data/tag_aux#values4.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 117 data/staden-io-lib-1.14.13/tests/data/tag_aux.fa: ASCII text data/staden-io-lib-1.14.13/tests/data/tag_aux.fa.fai: ASCII text data/staden-io-lib-1.14.13/tests/data/test_run_4_134_369_182.srf: data data/staden-io-lib-1.14.13/tests/data/traces.srf: data data/staden-io-lib-1.14.13/tests/data/xx#MD.sam: Sequence Alignment/Map (SAM), ASCII text data/staden-io-lib-1.14.13/tests/data/xx#MD2.sam: Sequence Alignment/Map (SAM), ASCII text data/staden-io-lib-1.14.13/tests/data/xx#blank.sam: empty data/staden-io-lib-1.14.13/tests/data/xx#large_aux.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/xx#large_aux2.sam: Sequence Alignment/Map (SAM), ASCII text data/staden-io-lib-1.14.13/tests/data/xx#large_aux_java.cram: CRAM version 3.0 (identified as xx#large_aux.sam) data/staden-io-lib-1.14.13/tests/data/xx#large_aux_java.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/staden-io-lib-1.14.13/tests/data/xx#minimal.sam: ASCII text data/staden-io-lib-1.14.13/tests/data/xx#pair.sam: ASCII text data/staden-io-lib-1.14.13/tests/data/xx#repeated.sam: ASCII text data/staden-io-lib-1.14.13/tests/data/xx#rg.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/staden-io-lib-1.14.13/tests/data/xx#triplet.sam: ASCII text data/staden-io-lib-1.14.13/tests/data/xx#unsorted.sam: ASCII text data/staden-io-lib-1.14.13/tests/data/xx.fa: ASCII text data/staden-io-lib-1.14.13/tests/data/xx.fa.fai: ASCII text data/staden-io-lib-1.14.13/tests/generate_data.pl: Perl script text executable data/staden-io-lib-1.14.13/tests/java.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/tests/scram.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/tests/scram_mt30.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/tests/scram_mt31.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/tests/scram_mt40.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/tests/srf2fasta.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/tests/srf2fastq.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/tests/srf_filter.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/tests/srf_index.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/tests/srf_info.test: POSIX shell script, ASCII text executable data/staden-io-lib-1.14.13/debian/changelog: UTF-8 Unicode text data/staden-io-lib-1.14.13/debian/control: UTF-8 Unicode text data/staden-io-lib-1.14.13/debian/copyright: UTF-8 Unicode text data/staden-io-lib-1.14.13/debian/libstaden-read-dev.manpages: ASCII text data/staden-io-lib-1.14.13/debian/libstaden-read14.symbols: ASCII text data/staden-io-lib-1.14.13/debian/man1/append_sff.1: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/debian/man1/srf_dump_all.1: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/debian/man1/srf_filter.1: troff or preprocessor input, ASCII text data/staden-io-lib-1.14.13/debian/not-installed: ASCII text data/staden-io-lib-1.14.13/debian/patches/32-bit.patch: unified diff output, ASCII text data/staden-io-lib-1.14.13/debian/patches/fix_fseeko.patch: unified diff output, ASCII text data/staden-io-lib-1.14.13/debian/patches/pathmax.patch: unified diff output, ASCII text data/staden-io-lib-1.14.13/debian/patches/series: ASCII text data/staden-io-lib-1.14.13/debian/patches/spelling: unified diff output, ASCII text data/staden-io-lib-1.14.13/debian/patches/usedebianhtscodecs.patch: unified diff output, ASCII text data/staden-io-lib-1.14.13/debian/rules: a /usr/bin/make -f script, ASCII text executable data/staden-io-lib-1.14.13/debian/salsa-ci.yml: ASCII text data/staden-io-lib-1.14.13/debian/source/format: ASCII text 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data/staden-io-lib-1.14.13/.pc/.quilt_series: ASCII text data/staden-io-lib-1.14.13/.pc/applied-patches: ASCII text data/staden-io-lib-1.14.13/.pc/32-bit.patch/io_lib/cram_stats.c: C source, ASCII text data/staden-io-lib-1.14.13/.pc/32-bit.patch/io_lib/hash_table.c: C source, ASCII text data/staden-io-lib-1.14.13/.pc/32-bit.patch/io_lib/hash_table.h: C source, ASCII text data/staden-io-lib-1.14.13/.pc/pathmax.patch/io_lib/cram_index.c: C source, ASCII text data/staden-io-lib-1.14.13/.pc/pathmax.patch/io_lib/cram_io.c: C source, ASCII text data/staden-io-lib-1.14.13/.pc/pathmax.patch/io_lib/files.c: C source, ASCII text data/staden-io-lib-1.14.13/.pc/pathmax.patch/io_lib/srf.h: C source, ASCII text data/staden-io-lib-1.14.13/.pc/pathmax.patch/progs/cram_index.c: C source, ASCII text data/staden-io-lib-1.14.13/.pc/fix_fseeko.patch/io_lib/bgzip.c: C source, ASCII text data/staden-io-lib-1.14.13/.pc/spelling/io_lib/mach-io.c: C source, ASCII text 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