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data/staden-2.0.0+b11/primer3/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/primer3/src/boulder_input.c: C source, ASCII text data/staden-2.0.0+b11/primer3/src/boulder_input.h: C source, ASCII text data/staden-2.0.0+b11/primer3/src/dpal.c: C source, ASCII text data/staden-2.0.0+b11/primer3/src/dpal.h: C source, ASCII text data/staden-2.0.0+b11/primer3/src/format_output.c: C source, ASCII text data/staden-2.0.0+b11/primer3/src/format_output.h: C source, ASCII text data/staden-2.0.0+b11/primer3/src/ntdpal_main.c: C source, ASCII text data/staden-2.0.0+b11/primer3/src/oligotm.c: C source, ASCII text data/staden-2.0.0+b11/primer3/src/oligotm.h: C source, ASCII text data/staden-2.0.0+b11/primer3/src/primer3.h: C source, ASCII text data/staden-2.0.0+b11/primer3/src/primer3_lib.c: C source, ASCII text data/staden-2.0.0+b11/primer3/src/primer3_main.c: C source, ASCII text data/staden-2.0.0+b11/primer3/src/primer3_release.c: C source, ASCII text data/staden-2.0.0+b11/primer3/src/primer3_release.h: C source, ASCII text data/staden-2.0.0+b11/primer3/src/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/gap4/IO1.c: C source, ASCII text data/staden-2.0.0+b11/gap4/IO1.h: C source, ASCII text data/staden-2.0.0+b11/gap4/IO2.c: C source, ASCII text data/staden-2.0.0+b11/gap4/IO2.h: C source, ASCII text data/staden-2.0.0+b11/gap4/IO3.c: C source, ASCII text data/staden-2.0.0+b11/gap4/QueueInterface.h: C source, ASCII text data/staden-2.0.0+b11/gap4/SeqQueueTypes.h: C source, ASCII text data/staden-2.0.0+b11/gap4/actf.c: C source, ASCII text data/staden-2.0.0+b11/gap4/actf.h: C source, ASCII text data/staden-2.0.0+b11/gap4/active_tags.c: C source, ASCII text data/staden-2.0.0+b11/gap4/active_tags.h: C source, ASCII text data/staden-2.0.0+b11/gap4/alter_rel.c: C source, ASCII text data/staden-2.0.0+b11/gap4/alter_rel.h: C source, ASCII text data/staden-2.0.0+b11/gap4/assemble_direct.c: C source, ASCII text 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source, ASCII text data/staden-2.0.0+b11/gap4/list.c: C source, ASCII text data/staden-2.0.0+b11/gap4/list.h: C source, ASCII text data/staden-2.0.0+b11/gap4/list_proc.c: C source, ASCII text data/staden-2.0.0+b11/gap4/list_proc.h: C source, ASCII text data/staden-2.0.0+b11/gap4/mess.c: C source, ASCII text data/staden-2.0.0+b11/gap4/newgap_cmds.c: C source, ASCII text data/staden-2.0.0+b11/gap4/newgap_cmds.h: C source, ASCII text data/staden-2.0.0+b11/gap4/newgap_structs.h: C source, ASCII text data/staden-2.0.0+b11/gap4/notedb.c: C source, ASCII text data/staden-2.0.0+b11/gap4/notedb.h: C source, ASCII text data/staden-2.0.0+b11/gap4/notes.c: C source, ASCII text data/staden-2.0.0+b11/gap4/notes.h: C source, ASCII text data/staden-2.0.0+b11/gap4/oligo.c: C source, ASCII text data/staden-2.0.0+b11/gap4/oligo.h: C source, ASCII text data/staden-2.0.0+b11/gap4/oligo_sel.c: C source, ASCII text data/staden-2.0.0+b11/gap4/oligo_sel.h: C source, ASCII text data/staden-2.0.0+b11/gap4/parse_ft.c: C source, ASCII text data/staden-2.0.0+b11/gap4/parse_ft.h: C source, ASCII text data/staden-2.0.0+b11/gap4/plot_quality.c: C source, ASCII text data/staden-2.0.0+b11/gap4/plot_quality.h: ASCII text data/staden-2.0.0+b11/gap4/preass.c: C source, ASCII text data/staden-2.0.0+b11/gap4/preass.h: C source, ASCII text data/staden-2.0.0+b11/gap4/primlib.c: C source, ASCII text data/staden-2.0.0+b11/gap4/primlib.h: C source, ASCII text data/staden-2.0.0+b11/gap4/probe.c: C source, ASCII text data/staden-2.0.0+b11/gap4/probe.h: C source, ASCII text data/staden-2.0.0+b11/gap4/qual.c: C source, ASCII text data/staden-2.0.0+b11/gap4/qual.h: C source, ASCII text data/staden-2.0.0+b11/gap4/qualIO.c: C source, ASCII text data/staden-2.0.0+b11/gap4/qualIO.h: C source, ASCII text data/staden-2.0.0+b11/gap4/qualP.h: C source, ASCII text data/staden-2.0.0+b11/gap4/quality_plot.c: C source, ASCII text data/staden-2.0.0+b11/gap4/quality_plot.h: C source, ASCII text data/staden-2.0.0+b11/gap4/reactions.c: C source, ASCII text data/staden-2.0.0+b11/gap4/reactions.h: C source, ASCII text data/staden-2.0.0+b11/gap4/reading_coverage.c: C source, ASCII text data/staden-2.0.0+b11/gap4/reading_coverage.h: C source, ASCII text data/staden-2.0.0+b11/gap4/readpair.c: C source, ASCII text data/staden-2.0.0+b11/gap4/readpair.h: ASCII text data/staden-2.0.0+b11/gap4/readpair_coverage.c: C source, ASCII text data/staden-2.0.0+b11/gap4/readpair_coverage.h: C source, ASCII text data/staden-2.0.0+b11/gap4/restriction_enzymes.c: C source, ASCII text data/staden-2.0.0+b11/gap4/restriction_enzymes.h: C source, ASCII text data/staden-2.0.0+b11/gap4/ruler_display.c: C source, ASCII text data/staden-2.0.0+b11/gap4/ruler_display.h: C source, ASCII text data/staden-2.0.0+b11/gap4/searchUtils.c: C source, ASCII text data/staden-2.0.0+b11/gap4/select.h: C source, ASCII text data/staden-2.0.0+b11/gap4/seqInfo.c: C source, ASCII text data/staden-2.0.0+b11/gap4/seqInfo.h: C source, ASCII text data/staden-2.0.0+b11/gap4/show_relationships.c: C source, ASCII text data/staden-2.0.0+b11/gap4/show_relationships.h: C source, ASCII text data/staden-2.0.0+b11/gap4/shuffle_pads.c: C source, ASCII text data/staden-2.0.0+b11/gap4/shuffle_pads.h: C source, ASCII text data/staden-2.0.0+b11/gap4/stack_dump.c: C source, ASCII text data/staden-2.0.0+b11/gap4/stack_dump.h: C source, ASCII text data/staden-2.0.0+b11/gap4/stop_codon.c: C source, ASCII text data/staden-2.0.0+b11/gap4/stop_codon.h: C source, ASCII text data/staden-2.0.0+b11/gap4/strand_coverage.c: C source, ASCII text data/staden-2.0.0+b11/gap4/strand_coverage.h: C source, ASCII text data/staden-2.0.0+b11/gap4/tagDefs.h: C source, ASCII text data/staden-2.0.0+b11/gap4/tagEditor.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tagU1.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tagU2.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tagUtils.h: C source, ASCII text data/staden-2.0.0+b11/gap4/tagdb.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tagdb.h: C source, ASCII text data/staden-2.0.0+b11/gap4/template.c: C source, ASCII text data/staden-2.0.0+b11/gap4/template.h: C source, ASCII text data/staden-2.0.0+b11/gap4/template_display.c: C source, ASCII text data/staden-2.0.0+b11/gap4/template_display.h: C source, ASCII text data/staden-2.0.0+b11/gap4/text-io-reg.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tk-io-reg.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tk-io-reg.h: C source, ASCII text data/staden-2.0.0+b11/gap4/tkAppInit.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tkEdNames.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tkEdNames.h: C source, ASCII text data/staden-2.0.0+b11/gap4/tkEdUtils.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tkEditor.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tkEditor.h: C source, ASCII text data/staden-2.0.0+b11/gap4/tman_cons.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tman_diff.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tman_diff.h: C source, ASCII text data/staden-2.0.0+b11/gap4/tman_display.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tman_display.h: C source, ASCII text data/staden-2.0.0+b11/gap4/tman_interface.c: C source, ASCII text data/staden-2.0.0+b11/gap4/tman_interface.h: C source, ASCII text data/staden-2.0.0+b11/gap4/undo.c: C source, ASCII text data/staden-2.0.0+b11/gap4/undo.h: C source, ASCII text data/staden-2.0.0+b11/gap4/vseqs.c: C source, ASCII text data/staden-2.0.0+b11/gap4/vseqs.h: C source, ASCII text data/staden-2.0.0+b11/gap4/acd2tag.tcl: ASCII text data/staden-2.0.0+b11/gap4/alter_rel.tcl: ASCII text data/staden-2.0.0+b11/gap4/assemble_direct.tcl: ASCII text data/staden-2.0.0+b11/gap4/auto_assemble.tcl: ASCII text data/staden-2.0.0+b11/gap4/break_contig.tcl: ASCII text data/staden-2.0.0+b11/gap4/check_assembly.tcl: ASCII text data/staden-2.0.0+b11/gap4/clip.tcl: ASCII text data/staden-2.0.0+b11/gap4/complement.tcl: ASCII text data/staden-2.0.0+b11/gap4/confidence_graph.tcl: ASCII text data/staden-2.0.0+b11/gap4/configure.tcl: ASCII text data/staden-2.0.0+b11/gap4/consen.tcl: ASCII text data/staden-2.0.0+b11/gap4/consistency_display.tcl: ASCII text data/staden-2.0.0+b11/gap4/contig_editor.tcl: ASCII text data/staden-2.0.0+b11/gap4/contig_id.tcl: ASCII text data/staden-2.0.0+b11/gap4/contig_order.tcl: ASCII text data/staden-2.0.0+b11/gap4/contig_selector.tcl: ASCII text data/staden-2.0.0+b11/gap4/dis_readings.tcl: ASCII text data/staden-2.0.0+b11/gap4/dstrand.tcl: ASCII text data/staden-2.0.0+b11/gap4/editor_search.tcl: ASCII text data/staden-2.0.0+b11/gap4/enter_tags.tcl: ASCII text data/staden-2.0.0+b11/gap4/extract.tcl: ASCII text data/staden-2.0.0+b11/gap4/fij.tcl: ASCII text data/staden-2.0.0+b11/gap4/find_oligo.tcl: ASCII text data/staden-2.0.0+b11/gap4/find_repeats.tcl: ASCII text data/staden-2.0.0+b11/gap4/gap.tcl: ASCII text data/staden-2.0.0+b11/gap4/gap_canvas_box.tcl: ASCII text data/staden-2.0.0+b11/gap4/gap_nav.tcl: ASCII text data/staden-2.0.0+b11/gap4/gap_prefinish.tcl: ASCII text data/staden-2.0.0+b11/gap4/gap_restriction_enzymes.tcl: ASCII text data/staden-2.0.0+b11/gap4/gap_utils.tcl: ASCII text data/staden-2.0.0+b11/gap4/help_exp.tcl: empty data/staden-2.0.0+b11/gap4/list_contigs.tcl: ASCII text data/staden-2.0.0+b11/gap4/list_proc.tcl: ASCII text data/staden-2.0.0+b11/gap4/ng_fb_cmds.tcl: ASCII text data/staden-2.0.0+b11/gap4/notes.tcl: ASCII text data/staden-2.0.0+b11/gap4/oligo_param.tcl: ASCII text data/staden-2.0.0+b11/gap4/pcr_primers.tcl: ASCII text data/staden-2.0.0+b11/gap4/preass.tcl: ASCII text data/staden-2.0.0+b11/gap4/probe.tcl: ASCII text data/staden-2.0.0+b11/gap4/qual.tcl: ASCII text data/staden-2.0.0+b11/gap4/quality_plot.tcl: ASCII text data/staden-2.0.0+b11/gap4/reactions.tcl: ASCII text data/staden-2.0.0+b11/gap4/reading_coverage.tcl: ASCII text data/staden-2.0.0+b11/gap4/readpair.tcl: ASCII text data/staden-2.0.0+b11/gap4/readpair_coverage.tcl: ASCII text data/staden-2.0.0+b11/gap4/result_manager.tcl: ASCII text data/staden-2.0.0+b11/gap4/search.tcl: ASCII text data/staden-2.0.0+b11/gap4/select_contig.tcl: ASCII text data/staden-2.0.0+b11/gap4/sendto.tcl: ASCII text data/staden-2.0.0+b11/gap4/show_relationships.tcl: ASCII text data/staden-2.0.0+b11/gap4/shuffle_pads.tcl: ASCII text data/staden-2.0.0+b11/gap4/stop_codon.tcl: ASCII text data/staden-2.0.0+b11/gap4/strand_coverage.tcl: ASCII text data/staden-2.0.0+b11/gap4/tag_checklist.tcl: ASCII text data/staden-2.0.0+b11/gap4/tag_editor.tcl: ASCII text data/staden-2.0.0+b11/gap4/template_display.tcl: ASCII text data/staden-2.0.0+b11/gap4/trace_display.tcl: ASCII text data/staden-2.0.0+b11/gap4/tclIndex: ASCII text data/staden-2.0.0+b11/gap4/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/gap4/gap4.bat: ASCII text data/staden-2.0.0+b11/gap4/GTAGDB: ASCII text data/staden-2.0.0+b11/gap4/NOTEDB: ASCII text data/staden-2.0.0+b11/gap4/follow.bitmap: ASCII text data/staden-2.0.0+b11/gap4/checked.gif: GIF image data, version 87a, 15 x 15 data/staden-2.0.0+b11/gap4/unchecked.gif: GIF image data, version 87a, 15 x 15 data/staden-2.0.0+b11/gap4/gaprc: ASCII text data/staden-2.0.0+b11/gap4/gaprc_menu_full: ASCII text data/staden-2.0.0+b11/gap4/cap2rc: ASCII text data/staden-2.0.0+b11/gap4/cap3rc: ASCII text data/staden-2.0.0+b11/gap4/fak2rc: ASCII text data/staden-2.0.0+b11/gap4/phraprc: ASCII text data/staden-2.0.0+b11/gap4/gaprc_menu_mito: ASCII text data/staden-2.0.0+b11/gap4/gap4.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/prefinish/delta_g.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/dist.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/dust.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/dust.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_distributions.c: ASCII text data/staden-2.0.0+b11/prefinish/finish_filter.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_filter.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_hash.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_hash.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_long.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_long.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_main.c: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/finish_main.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_pcr.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_pcr.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_reverse.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_reverse.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_utils.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_utils.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_walk.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/finish_walk.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/gap_cli_arg.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/gap_cli_arg.h: C source, ASCII text data/staden-2.0.0+b11/prefinish/init.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/insert_size_dist.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/main.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/random.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/read_conf_dist.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/read_size_dist.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/test.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/testbak.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/tkMain.c: C source, ASCII text data/staden-2.0.0+b11/prefinish/add_stops.tcl: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/prefinish/assert.tcl: ASCII text data/staden-2.0.0+b11/prefinish/chemistry.tcl: ASCII text data/staden-2.0.0+b11/prefinish/fake_insert_sizes.tcl: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/prefinish/finish.tcl: ASCII text data/staden-2.0.0+b11/prefinish/finish_sanger.tcl: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/prefinish/prefinish.tcl: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/prefinish/prefinish_lib.tcl: ASCII text data/staden-2.0.0+b11/prefinish/sanger_names.tcl: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/prefinish/svec2cvec.tcl: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/prefinish/tooltips.tcl: ASCII text data/staden-2.0.0+b11/prefinish/param_costs.itcl: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/param_primer3.itcl: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/param_walk.itcl: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/params.itcl: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/pass.itcl: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/root.itcl: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/rule.itcl: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/solution.itcl: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/tree.itcl: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/hierarchybook.itk: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/xscrolledframe.itk: C++ source, ASCII text data/staden-2.0.0+b11/prefinish/help: ASCII text data/staden-2.0.0+b11/prefinish/args.template: ASCII text data/staden-2.0.0+b11/prefinish/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/prefinish/tclIndex: ASCII text data/staden-2.0.0+b11/prefinish/config.prefinish: ASCII text, with very long lines data/staden-2.0.0+b11/prefinish/finish_cDNA: Korn shell script, ASCII text executable data/staden-2.0.0+b11/prefinish/finish_cDNA_ends_only: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/prefinish/prefinishrc: ASCII text data/staden-2.0.0+b11/prefinish/rules/chemistry.rule: ASCII text data/staden-2.0.0+b11/prefinish/rules/confidence.rule: ASCII text data/staden-2.0.0+b11/prefinish/rules/dbl_strand_or_chem.rule: ASCII text data/staden-2.0.0+b11/prefinish/rules/double_stranded.rule: ASCII text data/staden-2.0.0+b11/prefinish/rules/extend_left.rule: ASCII text data/staden-2.0.0+b11/prefinish/rules/extend_right.rule: ASCII text data/staden-2.0.0+b11/prefinish/rules/sequence_depth.rule: ASCII text data/staden-2.0.0+b11/prefinish/rules/template_depth.rule: ASCII text data/staden-2.0.0+b11/prefinish/docs/CHEMISTRY: ASCII text data/staden-2.0.0+b11/prefinish/docs/METHODS: ASCII text data/staden-2.0.0+b11/prefinish/docs/OUTPUT: ASCII text data/staden-2.0.0+b11/prefinish/docs/OVERVIEW: ASCII text data/staden-2.0.0+b11/prefinish/docs/PRIMER_WRAPPER: ASCII text data/staden-2.0.0+b11/prefinish/docs/README-GUI: ASCII text data/staden-2.0.0+b11/prefinish/docs/STATS: ASCII text data/staden-2.0.0+b11/prefinish/finish_sanger: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/prefinish/prefinish.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/haplo/haplo.h: C source, ASCII text data/staden-2.0.0+b11/haplo/haplo_cons.c: C source, ASCII text data/staden-2.0.0+b11/haplo/haplo_snps.c: C source, ASCII text data/staden-2.0.0+b11/haplo/haplo_split.c: C source, ASCII text data/staden-2.0.0+b11/haplo/haplo_tcl.c: C source, ASCII text data/staden-2.0.0+b11/haplo/haplo.tcl: ASCII text data/staden-2.0.0+b11/haplo/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/haplo/tclIndex: ASCII text data/staden-2.0.0+b11/haplo/haplorc: ASCII text data/staden-2.0.0+b11/eba/conf.h: C source, ASCII text data/staden-2.0.0+b11/eba/qual.c: C source, ASCII text data/staden-2.0.0+b11/eba/Makefile: ASCII text data/staden-2.0.0+b11/eba/conf.c: C source, ASCII text data/staden-2.0.0+b11/init_exp/init_exp.c: C source, ASCII text data/staden-2.0.0+b11/init_exp/Makefile: ASCII text data/staden-2.0.0+b11/get_scf_field/get_scf_field.c: C source, ASCII text data/staden-2.0.0+b11/get_scf_field/Makefile: ASCII text data/staden-2.0.0+b11/spin/codon_content.c: C source, ASCII text data/staden-2.0.0+b11/spin/codon_content.h: C source, ASCII text data/staden-2.0.0+b11/spin/compare_spans.c: C source, ASCII text data/staden-2.0.0+b11/spin/compare_spans.h: C source, ASCII text data/staden-2.0.0+b11/spin/dinuc_freqs.c: C source, ASCII text data/staden-2.0.0+b11/spin/dinuc_freqs.h: C source, ASCII text data/staden-2.0.0+b11/spin/emboss_input_funcs.c: C source, ASCII text data/staden-2.0.0+b11/spin/emboss_input_funcs.h: C source, ASCII text data/staden-2.0.0+b11/spin/init.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_base_comp.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_base_comp.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_canvas_box.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_canvas_box.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_cmds.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_cmds.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_gene_search.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_gene_search.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_globals.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_globals.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_raster.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_restriction_enzymes.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_restriction_enzymes.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_results.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_sendto.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_splice_search.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_splice_search.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_stop_codon.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_stop_codon.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_string_search.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_string_search.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_structs.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_trna_search.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_trna_search.h: C source, ASCII text data/staden-2.0.0+b11/spin/nip_wtmatrix_search.c: C source, ASCII text data/staden-2.0.0+b11/spin/nip_wtmatrix_search.h: C source, ASCII text data/staden-2.0.0+b11/spin/probs.c: C source, ASCII text data/staden-2.0.0+b11/spin/probs.h: C source, ASCII text data/staden-2.0.0+b11/spin/raster_cmds.c: C source, ASCII text data/staden-2.0.0+b11/spin/raster_cmds.h: C source, ASCII text data/staden-2.0.0+b11/spin/raster_globals.h: C source, ASCII text data/staden-2.0.0+b11/spin/raster_structs.h: C source, ASCII text data/staden-2.0.0+b11/spin/readpam.c: C source, ASCII text data/staden-2.0.0+b11/spin/readpam.h: C source, ASCII text data/staden-2.0.0+b11/spin/rescan_matches.c: C source, ASCII text data/staden-2.0.0+b11/spin/rescan_matches.h: C source, ASCII text data/staden-2.0.0+b11/spin/resource.h: ASCII text data/staden-2.0.0+b11/spin/seq_plot_funcs.c: C source, ASCII text data/staden-2.0.0+b11/spin/seq_plot_funcs.h: C source, ASCII text data/staden-2.0.0+b11/spin/seq_raster.c: C source, ASCII text data/staden-2.0.0+b11/spin/seq_raster.h: C source, ASCII text data/staden-2.0.0+b11/spin/seq_reg.c: C source, ASCII text data/staden-2.0.0+b11/spin/seq_reg.h: C source, ASCII text data/staden-2.0.0+b11/spin/seq_reg_cmds.c: C source, ASCII text data/staden-2.0.0+b11/spin/seq_reg_structs.h: C source, ASCII text data/staden-2.0.0+b11/spin/seq_results.c: C source, ASCII text data/staden-2.0.0+b11/spin/seq_results.h: C source, ASCII text data/staden-2.0.0+b11/spin/seq_sendto.c: C source, ASCII text data/staden-2.0.0+b11/spin/seq_sendto.h: C source, ASCII text data/staden-2.0.0+b11/spin/seqed.c: C source, ASCII text data/staden-2.0.0+b11/spin/seqed.h: C source, ASCII text data/staden-2.0.0+b11/spin/seqedInterface.c: C source, ASCII text data/staden-2.0.0+b11/spin/seqedInterface.h: C source, ASCII text data/staden-2.0.0+b11/spin/seqed_restriction_enzymes.c: C source, ASCII text data/staden-2.0.0+b11/spin/seqed_restriction_enzymes.h: ASCII text data/staden-2.0.0+b11/spin/seqed_search.c: C source, ASCII text data/staden-2.0.0+b11/spin/seqed_search.h: C source, ASCII text data/staden-2.0.0+b11/spin/seqed_translate.c: C source, ASCII text data/staden-2.0.0+b11/spin/seqed_translate.h: C source, ASCII text data/staden-2.0.0+b11/spin/seqed_write.c: C source, ASCII text data/staden-2.0.0+b11/spin/seqed_write.h: C source, ASCII text data/staden-2.0.0+b11/spin/sequence_pair_display.c: C source, ASCII text data/staden-2.0.0+b11/spin/sequence_pair_display.h: C source, ASCII text data/staden-2.0.0+b11/spin/sequtils.c: C source, ASCII text data/staden-2.0.0+b11/spin/sequtils.h: C source, ASCII text data/staden-2.0.0+b11/spin/sequtils_cmds.h: C source, ASCII text data/staden-2.0.0+b11/spin/sequtils_structs.h: C source, ASCII text data/staden-2.0.0+b11/spin/sim.c: C source, ASCII text data/staden-2.0.0+b11/spin/sim.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_align.c: C source, ASCII text data/staden-2.0.0+b11/spin/sip_align.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_cmds.c: C source, ASCII text data/staden-2.0.0+b11/spin/sip_cmds.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_find_identity.c: C source, ASCII text data/staden-2.0.0+b11/spin/sip_find_identity.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_globals.c: C source, ASCII text data/staden-2.0.0+b11/spin/sip_globals.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_hash.c: C source, ASCII text data/staden-2.0.0+b11/spin/sip_hash.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_quick_scan.c: C source, ASCII text data/staden-2.0.0+b11/spin/sip_quick_scan.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_results.c: C source, ASCII text data/staden-2.0.0+b11/spin/sip_results.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_sendto.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_sim.c: C source, ASCII text data/staden-2.0.0+b11/spin/sip_sim.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_similar_spans.c: C source, ASCII text data/staden-2.0.0+b11/spin/sip_similar_spans.h: C source, ASCII text data/staden-2.0.0+b11/spin/sip_structs.h: C source, ASCII text data/staden-2.0.0+b11/spin/spin_globals.c: C source, ASCII text data/staden-2.0.0+b11/spin/spin_globals.h: C source, ASCII text data/staden-2.0.0+b11/spin/splice_search.c: C source, ASCII text data/staden-2.0.0+b11/spin/splice_search.h: C source, ASCII text data/staden-2.0.0+b11/spin/tkSeqed.c: C source, ASCII text data/staden-2.0.0+b11/spin/tkSeqed.h: C source, ASCII text data/staden-2.0.0+b11/spin/tkSeqedNames.c: C source, ASCII text data/staden-2.0.0+b11/spin/tkSeqedNames.h: C source, ASCII text data/staden-2.0.0+b11/spin/tkSeqedUtils.c: C source, ASCII text data/staden-2.0.0+b11/spin/tkSeqedUtils.h: C source, ASCII text data/staden-2.0.0+b11/spin/trna_search.c: C source, ASCII text data/staden-2.0.0+b11/spin/trna_search.h: C source, ASCII text data/staden-2.0.0+b11/spin/base_comp.tcl: ASCII text data/staden-2.0.0+b11/spin/comborange.tcl: ASCII text data/staden-2.0.0+b11/spin/dot_raster.tcl: ASCII text data/staden-2.0.0+b11/spin/gap_canvas_box.tcl: ASCII text data/staden-2.0.0+b11/spin/gene_search.tcl: ASCII text data/staden-2.0.0+b11/spin/graph_raster.tcl: ASCII text data/staden-2.0.0+b11/spin/keybox.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_canvas_box.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_codon_content.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_dinuc_freq.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_genetic_code.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_open_reading_frames.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_restriction_enzymes.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_sendto.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_stop_codon.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_string_search.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_translation.tcl: ASCII text data/staden-2.0.0+b11/spin/nip_wtmatrix_search.tcl: ASCII text data/staden-2.0.0+b11/spin/rescan_matches.tcl: ASCII text data/staden-2.0.0+b11/spin/seq_id.tcl: ASCII text data/staden-2.0.0+b11/spin/seq_raster.tcl: ASCII text data/staden-2.0.0+b11/spin/seq_result_manager.tcl: ASCII text data/staden-2.0.0+b11/spin/seqed.tcl: ASCII text data/staden-2.0.0+b11/spin/seqed_search.tcl: ASCII text data/staden-2.0.0+b11/spin/sequence_browser.tcl: ASCII text data/staden-2.0.0+b11/spin/sequence_manager.tcl: ASCII text data/staden-2.0.0+b11/spin/sequence_pair_display.tcl: ASCII text data/staden-2.0.0+b11/spin/set_alignment_symbols.tcl: ASCII text data/staden-2.0.0+b11/spin/sip_align.tcl: ASCII text data/staden-2.0.0+b11/spin/sip_config.tcl: ASCII text data/staden-2.0.0+b11/spin/sip_find_identity.tcl: ASCII text data/staden-2.0.0+b11/spin/sip_options.tcl: ASCII text data/staden-2.0.0+b11/spin/sip_quick_scan.tcl: ASCII text data/staden-2.0.0+b11/spin/sip_sendto.tcl: ASCII text data/staden-2.0.0+b11/spin/sip_sim.tcl: ASCII text data/staden-2.0.0+b11/spin/sip_similar_spans.tcl: ASCII text data/staden-2.0.0+b11/spin/spin.tcl: ASCII text data/staden-2.0.0+b11/spin/splice_search.tcl: ASCII text data/staden-2.0.0+b11/spin/strand.tcl: ASCII text data/staden-2.0.0+b11/spin/trna_search.tcl: ASCII text data/staden-2.0.0+b11/spin/tclIndex: ASCII text data/staden-2.0.0+b11/spin/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/spin/spin.bat: ASCII text data/staden-2.0.0+b11/spin/eia.wts: ASCII text data/staden-2.0.0+b11/spin/ied.wts: ASCII text data/staden-2.0.0+b11/spin/perceptron.wts: ASCII text data/staden-2.0.0+b11/spin/prokprom_10.wts: ASCII text data/staden-2.0.0+b11/spin/prokprom_35.wts: ASCII text data/staden-2.0.0+b11/spin/niprc: ASCII text data/staden-2.0.0+b11/spin/siprc: ASCII text data/staden-2.0.0+b11/spin/spinrc: ASCII text data/staden-2.0.0+b11/spin/spin.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/vector_clip/vector_clip.c: C source, ASCII text data/staden-2.0.0+b11/vector_clip/Makefile: ASCII text data/staden-2.0.0+b11/tracediff/staden.h: C source, ASCII text data/staden-2.0.0+b11/tracediff/main.cpp: C source, ASCII text data/staden-2.0.0+b11/tracediff/Makefile: ASCII text data/staden-2.0.0+b11/screen_seq/screen_seq.c: C source, ASCII text data/staden-2.0.0+b11/screen_seq/Makefile: ASCII text data/staden-2.0.0+b11/qclip/consen.c: C source, ASCII text data/staden-2.0.0+b11/qclip/consen.h: C source, ASCII text data/staden-2.0.0+b11/qclip/qclip.c: C source, ASCII text data/staden-2.0.0+b11/qclip/seqInfo.c: C source, ASCII text data/staden-2.0.0+b11/qclip/seqInfo.h: C source, ASCII text data/staden-2.0.0+b11/qclip/Makefile: ASCII text data/staden-2.0.0+b11/polyA_clip/polyA_clip.c: C source, ASCII text data/staden-2.0.0+b11/polyA_clip/seqInfo.c: C source, ASCII text data/staden-2.0.0+b11/polyA_clip/seqInfo.h: C source, ASCII text data/staden-2.0.0+b11/polyA_clip/Makefile: ASCII text data/staden-2.0.0+b11/stops/Makefile: ASCII text data/staden-2.0.0+b11/stops/stops.c: C source, ASCII text data/staden-2.0.0+b11/pregap4/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/pregap4/config_files.tcl: ASCII text data/staden-2.0.0+b11/pregap4/conversions.tcl: ASCII text data/staden-2.0.0+b11/pregap4/edit_exp.tcl: ASCII text data/staden-2.0.0+b11/pregap4/gui.tcl: ASCII text data/staden-2.0.0+b11/pregap4/images.tcl: ASCII text data/staden-2.0.0+b11/pregap4/modules.tcl: ASCII text data/staden-2.0.0+b11/pregap4/name_scheme.tcl: ASCII text data/staden-2.0.0+b11/pregap4/pregap4.tcl: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/pregap4/query_files.tcl: ASCII text data/staden-2.0.0+b11/pregap4/templates.tcl: ASCII text data/staden-2.0.0+b11/pregap4/unix_database.tcl: ASCII text data/staden-2.0.0+b11/pregap4/utils.tcl: ASCII text data/staden-2.0.0+b11/pregap4/widget.tcl: ASCII text data/staden-2.0.0+b11/pregap4/xcheck.tcl: ASCII text data/staden-2.0.0+b11/pregap4/blank.xbm: ASCII text data/staden-2.0.0+b11/pregap4/tclIndex: ASCII text data/staden-2.0.0+b11/pregap4/pregap4.bat: ASCII text data/staden-2.0.0+b11/pregap4/widget_licence: ASCII text data/staden-2.0.0+b11/pregap4/modules/atqa.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/augment_exp.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/blast.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/cap2_assemble.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/cap3_assemble.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/cap3old_assemble.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/cloning_vector_clip.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/compress_trace.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/convert_trace.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/cross_match_svec.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/eba.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/email.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/enter_assembly.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/extract_seq.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/fakii_assemble.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/gap4_assemble.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/hetins.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/init.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/init_exp.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/interactive_clip.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/mutscan.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/old_cloning_vector_clip.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/old_phrap_assemble.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/phrap_assemble.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/phred.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/polyA.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/quality_clip.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/reference.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/repeat_masker.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/screen_seq.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/screen_vector.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/sequence_vector_clip.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/shutdown.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/to_scf.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/trace_clip.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/trace_diff.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/tracediff.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/uncalled_clip.p4m: ASCII text data/staden-2.0.0+b11/pregap4/modules/update_biolims.p4m: ASCII text data/staden-2.0.0+b11/pregap4/naming_schemes/mutation_detection.p4t: ASCII text data/staden-2.0.0+b11/pregap4/naming_schemes/sanger_names_new.p4t: ASCII text data/staden-2.0.0+b11/pregap4/naming_schemes/sanger_names_old.p4t: ASCII text data/staden-2.0.0+b11/pregap4/pregap4rc: ASCII text data/staden-2.0.0+b11/pregap4/pregap4.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/make_weights/make_weights.c: C source, ASCII text data/staden-2.0.0+b11/make_weights/Makefile: ASCII text data/staden-2.0.0+b11/find_renz/find_renz.c: C source, ASCII text data/staden-2.0.0+b11/find_renz/Makefile: ASCII text data/staden-2.0.0+b11/spin_emboss/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/spin_emboss/acd2tcl.tcl: ASCII text data/staden-2.0.0+b11/spin_emboss/create_emboss_files.tcl: ASCII text data/staden-2.0.0+b11/spin_emboss/disp_menu.tcl: ASCII text data/staden-2.0.0+b11/spin_emboss/emboss.tcl: ASCII text data/staden-2.0.0+b11/spin_emboss/emboss_utils.tcl: ASCII text data/staden-2.0.0+b11/spin_emboss/xget_fname.tcl: ASCII text data/staden-2.0.0+b11/spin_emboss/tclIndex: ASCII text data/staden-2.0.0+b11/spin_emboss/emboss_menu: ASCII text data/staden-2.0.0+b11/spin_emboss/spin_embossrc: ASCII text data/staden-2.0.0+b11/spin_emboss/create_emboss_files: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/copy_reads/copy_reads.c: C source, ASCII text data/staden-2.0.0+b11/copy_reads/copy_reads.h: ASCII text data/staden-2.0.0+b11/copy_reads/copy_reads_globals.c: C source, ASCII text data/staden-2.0.0+b11/copy_reads/copy_reads_globals.h: C source, ASCII text data/staden-2.0.0+b11/copy_reads/copy_reads.tcl: ASCII text, with very long lines data/staden-2.0.0+b11/copy_reads/copy_reads_main.tcl: ASCII text data/staden-2.0.0+b11/copy_reads/tclIndex: ASCII text data/staden-2.0.0+b11/copy_reads/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/copy_reads/copy_readsrc: ASCII text data/staden-2.0.0+b11/copy_reads/copy_reads.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/hetins/Makefile: ASCII text data/staden-2.0.0+b11/hetins/hetins.c: C source, ASCII text data/staden-2.0.0+b11/mutscan/pathutil.h: C source, ASCII text data/staden-2.0.0+b11/mutscan/staden.h: C source, ASCII text data/staden-2.0.0+b11/mutscan/main.cpp: C source, ASCII text data/staden-2.0.0+b11/mutscan/pathutil.cpp: C source, ASCII text data/staden-2.0.0+b11/mutscan/stringlist.cpp: C source, ASCII text data/staden-2.0.0+b11/mutscan/stringlist.hpp: C++ source, ASCII text data/staden-2.0.0+b11/mutscan/Makefile: ASCII text data/staden-2.0.0+b11/convert/bapDB.c: C source, ASCII text data/staden-2.0.0+b11/convert/bapDB.h: C source, ASCII text data/staden-2.0.0+b11/convert/bapIO.c: C source, ASCII text data/staden-2.0.0+b11/convert/bapIO.h: C source, ASCII text data/staden-2.0.0+b11/convert/dapDB.c: C source, ASCII text data/staden-2.0.0+b11/convert/dapDB.h: C source, ASCII text data/staden-2.0.0+b11/convert/dapIO.c: C source, ASCII text data/staden-2.0.0+b11/convert/dapIO.h: C source, ASCII text data/staden-2.0.0+b11/convert/flat_sd.c: C source, ASCII text data/staden-2.0.0+b11/convert/flat_sd.h: C source, ASCII text data/staden-2.0.0+b11/convert/gapDB.c: C source, ASCII text data/staden-2.0.0+b11/convert/gapDB.h: C source, ASCII text data/staden-2.0.0+b11/convert/list.c: C source, ASCII text data/staden-2.0.0+b11/convert/list.h: C source, ASCII text data/staden-2.0.0+b11/convert/main.c: C source, ASCII text data/staden-2.0.0+b11/convert/newtypes.h: C source, ASCII text data/staden-2.0.0+b11/convert/process.c: C source, ASCII text data/staden-2.0.0+b11/convert/process.h: C source, ASCII text data/staden-2.0.0+b11/convert/sap2dap.c: C source, ASCII text data/staden-2.0.0+b11/convert/Makefile: ASCII text data/staden-2.0.0+b11/convert/convert.doc: ASCII text data/staden-2.0.0+b11/gap5/ace.c: C source, ASCII text data/staden-2.0.0+b11/gap5/ace.h: C source, ASCII text data/staden-2.0.0+b11/gap5/actf.c: C source, ASCII text data/staden-2.0.0+b11/gap5/actf.h: C source, ASCII text data/staden-2.0.0+b11/gap5/active_tags.c: C source, ASCII text data/staden-2.0.0+b11/gap5/active_tags.h: C source, ASCII text data/staden-2.0.0+b11/gap5/afg.c: C source, ASCII text data/staden-2.0.0+b11/gap5/afg.h: C source, ASCII text data/staden-2.0.0+b11/gap5/auto_break.c: C source, ASCII text data/staden-2.0.0+b11/gap5/auto_break.h: C source, ASCII text data/staden-2.0.0+b11/gap5/b+tree2.c: C source, ASCII text data/staden-2.0.0+b11/gap5/b+tree2.h: C source, ASCII text data/staden-2.0.0+b11/gap5/baf.c: C source, ASCII text data/staden-2.0.0+b11/gap5/baf.h: C source, ASCII text data/staden-2.0.0+b11/gap5/break_contig.c: C source, ASCII text data/staden-2.0.0+b11/gap5/break_contig.h: C source, ASCII text data/staden-2.0.0+b11/gap5/caf.c: C source, ASCII text data/staden-2.0.0+b11/gap5/caf.h: C source, ASCII text data/staden-2.0.0+b11/gap5/check_assembly.c: C source, ASCII text data/staden-2.0.0+b11/gap5/check_assembly.h: C source, ASCII text data/staden-2.0.0+b11/gap5/consen.c: C source, ASCII text data/staden-2.0.0+b11/gap5/consen.h: C source, ASCII text data/staden-2.0.0+b11/gap5/consensus.c: C source, ASCII text data/staden-2.0.0+b11/gap5/consensus.h: C source, ASCII text data/staden-2.0.0+b11/gap5/contig_extend.c: C source, ASCII text data/staden-2.0.0+b11/gap5/contig_extend.h: C source, ASCII text data/staden-2.0.0+b11/gap5/contig_selector.c: C source, ASCII text data/staden-2.0.0+b11/gap5/contig_selector.h: C source, ASCII text data/staden-2.0.0+b11/gap5/cs-object.c: C source, ASCII text data/staden-2.0.0+b11/gap5/cs-object.h: C source, ASCII text 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source, ASCII text data/staden-2.0.0+b11/gap5/export_snps.h: C source, ASCII text data/staden-2.0.0+b11/gap5/extract.h: C source, ASCII text data/staden-2.0.0+b11/gap5/fasta.c: C source, ASCII text data/staden-2.0.0+b11/gap5/fasta.h: C source, ASCII text data/staden-2.0.0+b11/gap5/fij.c: C source, ASCII text data/staden-2.0.0+b11/gap5/fij.h: C source, ASCII text data/staden-2.0.0+b11/gap5/find_haplotypes.0.c: C source, ASCII text data/staden-2.0.0+b11/gap5/find_haplotypes.c: C source, ASCII text data/staden-2.0.0+b11/gap5/find_haplotypes.h: C source, ASCII text data/staden-2.0.0+b11/gap5/find_oligo.c: C source, ASCII text data/staden-2.0.0+b11/gap5/find_oligo.h: C source, ASCII text data/staden-2.0.0+b11/gap5/find_repeats.c: C source, ASCII text data/staden-2.0.0+b11/gap5/find_repeats.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-alloc.c: C source, ASCII text data/staden-2.0.0+b11/gap5/g-alloc.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-connect.c: C source, ASCII text data/staden-2.0.0+b11/gap5/g-connect.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-db.c: C source, ASCII text data/staden-2.0.0+b11/gap5/g-db.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-defs.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-error.c: C source, ASCII text data/staden-2.0.0+b11/gap5/g-error.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-filedefs.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-files.c: C source, ASCII text data/staden-2.0.0+b11/gap5/g-files.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-io.c: C source, ASCII text data/staden-2.0.0+b11/gap5/g-io.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-misc.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-os.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-request.c: C source, ASCII text data/staden-2.0.0+b11/gap5/g-request.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g-struct.c: C source, ASCII text data/staden-2.0.0+b11/gap5/g-struct.h: C source, ASCII text data/staden-2.0.0+b11/gap5/g.h: C source, ASCII text data/staden-2.0.0+b11/gap5/gap-error.c: C source, ASCII text data/staden-2.0.0+b11/gap5/gap-error.h: C source, ASCII text data/staden-2.0.0+b11/gap5/gap-if.h: C source, ASCII text data/staden-2.0.0+b11/gap5/gap-tcl.h: C source, ASCII text data/staden-2.0.0+b11/gap5/gap4_compat.c: C source, ASCII text data/staden-2.0.0+b11/gap5/gap4_compat.h: C source, ASCII text data/staden-2.0.0+b11/gap5/gap_canvas_box.c: C source, ASCII text data/staden-2.0.0+b11/gap5/gap_canvas_box.h: C source, ASCII text data/staden-2.0.0+b11/gap5/gap_cli_arg.c: C source, ASCII text data/staden-2.0.0+b11/gap5/gap_cli_arg.h: C source, ASCII text data/staden-2.0.0+b11/gap5/gap_globals.c: C source, ASCII text data/staden-2.0.0+b11/gap5/gap_globals.h: C source, ASCII text data/staden-2.0.0+b11/gap5/gap_hash.c: C source, ASCII text data/staden-2.0.0+b11/gap5/gap_hash.h: C source, ASCII text data/staden-2.0.0+b11/gap5/gap_range.c: C source, ASCII text 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data/staden-2.0.0+b11/gap5/maq.h: C source, ASCII text data/staden-2.0.0+b11/gap5/maqmap.c: C source, ASCII text data/staden-2.0.0+b11/gap5/maqmap.h: C source, ASCII text data/staden-2.0.0+b11/gap5/mkdefs.c: C source, ASCII text data/staden-2.0.0+b11/gap5/newgap5_cmds.c: C source, ASCII text data/staden-2.0.0+b11/gap5/newgap_cmds.h: C source, ASCII text data/staden-2.0.0+b11/gap5/newgap_structs.h: C source, ASCII text data/staden-2.0.0+b11/gap5/notedb.c: C source, ASCII text data/staden-2.0.0+b11/gap5/notedb.h: C source, ASCII text data/staden-2.0.0+b11/gap5/primlib.c: C source, ASCII text data/staden-2.0.0+b11/gap5/primlib.h: C source, ASCII text data/staden-2.0.0+b11/gap5/qual.c: C source, ASCII text data/staden-2.0.0+b11/gap5/qual.h: C source, ASCII text data/staden-2.0.0+b11/gap5/qualIO.c: C source, ASCII text data/staden-2.0.0+b11/gap5/qualIO.h: C source, ASCII text data/staden-2.0.0+b11/gap5/qualP.h: C source, ASCII text data/staden-2.0.0+b11/gap5/quality_plot.c: C source, ASCII text data/staden-2.0.0+b11/gap5/quality_plot.h: C source, ASCII text data/staden-2.0.0+b11/gap5/read_depth.c: C source, ASCII text data/staden-2.0.0+b11/gap5/read_depth.h: C source, ASCII text data/staden-2.0.0+b11/gap5/readpair.c: C source, ASCII text data/staden-2.0.0+b11/gap5/readpair.h: C source, ASCII text data/staden-2.0.0+b11/gap5/restriction_enzymes.c: C source, ASCII text data/staden-2.0.0+b11/gap5/restriction_enzymes.h: C source, ASCII text data/staden-2.0.0+b11/gap5/sam_index.h: C source, ASCII text data/staden-2.0.0+b11/gap5/sam_pileup.c: C source, ASCII text data/staden-2.0.0+b11/gap5/sam_pileup.h: C source, ASCII text data/staden-2.0.0+b11/gap5/shuffle_pads.c: C source, ASCII text data/staden-2.0.0+b11/gap5/shuffle_pads.h: C source, ASCII text data/staden-2.0.0+b11/gap5/stack_dump.c: C source, ASCII text data/staden-2.0.0+b11/gap5/stack_dump.h: C source, ASCII text data/staden-2.0.0+b11/gap5/str_finder.c: C source, ASCII text data/staden-2.0.0+b11/gap5/str_finder.h: C source, ASCII text data/staden-2.0.0+b11/gap5/tag_plot.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tag_plot.h: C source, ASCII text data/staden-2.0.0+b11/gap5/tagdb.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tagdb.h: C source, ASCII text data/staden-2.0.0+b11/gap5/template_display.c: C source, ASCII text data/staden-2.0.0+b11/gap5/template_display.h: C source, ASCII text data/staden-2.0.0+b11/gap5/template_draw.c: C source, ASCII text data/staden-2.0.0+b11/gap5/template_draw.h: C source, ASCII text data/staden-2.0.0+b11/gap5/tg_anno.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tg_anno.h: C source, ASCII text data/staden-2.0.0+b11/gap5/tg_bin.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tg_bin.h: C source, ASCII text data/staden-2.0.0+b11/gap5/tg_cache.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tg_cache_item.h: C source, ASCII text data/staden-2.0.0+b11/gap5/tg_check.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tg_check.h: C source, ASCII text 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data/staden-2.0.0+b11/gap5/tkEditor.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tkEditor.h: C source, ASCII text data/staden-2.0.0+b11/gap5/tman_display.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tman_display.h: C source, ASCII text data/staden-2.0.0+b11/gap5/tman_interface.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tman_interface.h: C source, ASCII text data/staden-2.0.0+b11/gap5/utlist.h: C source, ASCII text data/staden-2.0.0+b11/gap5/xalloc.h: C source, ASCII text data/staden-2.0.0+b11/gap5/assemble_single.tcl: ASCII text data/staden-2.0.0+b11/gap5/break_contig.tcl: ASCII text data/staden-2.0.0+b11/gap5/check_assembly.tcl: ASCII text data/staden-2.0.0+b11/gap5/check_database.tcl: ASCII text data/staden-2.0.0+b11/gap5/complement.tcl: ASCII text data/staden-2.0.0+b11/gap5/configure.tcl: ASCII text data/staden-2.0.0+b11/gap5/consen.tcl: ASCII text data/staden-2.0.0+b11/gap5/contig_editor.tcl: ASCII text data/staden-2.0.0+b11/gap5/contig_extend.tcl: ASCII text data/staden-2.0.0+b11/gap5/contig_graph.tcl: Tcl/Tk script, ASCII text executable data/staden-2.0.0+b11/gap5/contig_id.tcl: ASCII text data/staden-2.0.0+b11/gap5/contig_selector.tcl: ASCII text data/staden-2.0.0+b11/gap5/depth.tcl: ASCII text data/staden-2.0.0+b11/gap5/dis_readings.tcl: ASCII text data/staden-2.0.0+b11/gap5/editor_search.tcl: ASCII text data/staden-2.0.0+b11/gap5/export_contigs.tcl: ASCII text data/staden-2.0.0+b11/gap5/fij.tcl: ASCII text data/staden-2.0.0+b11/gap5/find_oligo.tcl: ASCII text data/staden-2.0.0+b11/gap5/find_repeats.tcl: ASCII text data/staden-2.0.0+b11/gap5/gap4_compat.tcl: ASCII text data/staden-2.0.0+b11/gap5/gap5.tcl: ASCII text data/staden-2.0.0+b11/gap5/gap5_cmd.tcl: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/gap5/gap5_del_test.tcl: ASCII text data/staden-2.0.0+b11/gap5/gap5_thrash.tcl: ASCII text data/staden-2.0.0+b11/gap5/gap_canvas_box.tcl: ASCII text data/staden-2.0.0+b11/gap5/gap_globals.tcl: ASCII text data/staden-2.0.0+b11/gap5/gap_restriction_enzymes.tcl: ASCII text data/staden-2.0.0+b11/gap5/gap_utils.tcl: ASCII text data/staden-2.0.0+b11/gap5/import_contigs.tcl: ASCII text data/staden-2.0.0+b11/gap5/import_gff.tcl: ASCII text data/staden-2.0.0+b11/gap5/jog.tcl: ASCII text data/staden-2.0.0+b11/gap5/libraries.tcl: Tcl script, ASCII text data/staden-2.0.0+b11/gap5/list_contigs.tcl: ASCII text data/staden-2.0.0+b11/gap5/list_proc.tcl: ASCII text data/staden-2.0.0+b11/gap5/map_reads.tcl: ASCII text data/staden-2.0.0+b11/gap5/ng_fb_cmds.tcl: ASCII text data/staden-2.0.0+b11/gap5/qual.tcl: ASCII text data/staden-2.0.0+b11/gap5/readpair.tcl: ASCII text data/staden-2.0.0+b11/gap5/replay_log.tcl: ASCII text data/staden-2.0.0+b11/gap5/result_manager.tcl: ASCII text data/staden-2.0.0+b11/gap5/scaffold.tcl: ASCII text data/staden-2.0.0+b11/gap5/search.tcl: ASCII text data/staden-2.0.0+b11/gap5/select_contig.tcl: ASCII text data/staden-2.0.0+b11/gap5/sendto.tcl: ASCII text data/staden-2.0.0+b11/gap5/shuffle_pads.tcl: ASCII text data/staden-2.0.0+b11/gap5/tag_checklist.tcl: ASCII text data/staden-2.0.0+b11/gap5/tag_editor.tcl: ASCII text data/staden-2.0.0+b11/gap5/trace_display.tcl: ASCII text data/staden-2.0.0+b11/gap5/tclIndex: ASCII text data/staden-2.0.0+b11/gap5/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/gap5/gap5rc: ASCII text data/staden-2.0.0+b11/gap5/gap5rc_menu_full: ASCII text data/staden-2.0.0+b11/gap5/gap5.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/gap5/gap5_cmd.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/gap5/tg_index.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/gap5/tg_view.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/gap5/export_contigs.c: C source, ASCII text data/staden-2.0.0+b11/gap5/sam_index.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tg_iface_g.c: C source, ASCII text data/staden-2.0.0+b11/gap5/tg_index.c: C source, ASCII text data/staden-2.0.0+b11/scripts/gzip_trace: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/scripts/bzip_trace: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/scripts/bzip2_trace: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/scripts/assemble4: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/scripts/fasta2exp: awk script, ASCII text executable data/staden-2.0.0+b11/scripts/make_fasta: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/scripts/staden2exp: Perl script text executable data/staden-2.0.0+b11/scripts/splitseq_da: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/scripts/staden_help: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/scripts/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/scripts/fasta-split: awk script, ASCII text executable data/staden-2.0.0+b11/data/RENZYM.4: ASCII text data/staden-2.0.0+b11/data/RENZYM.6: ASCII text data/staden-2.0.0+b11/data/RENZYM.ALL: ASCII text data/staden-2.0.0+b11/data/renzyme_bairoch: ASCII text data/staden-2.0.0+b11/data/m13mp18_primers: ASCII text data/staden-2.0.0+b11/data/vector_primer: ASCII text data/staden-2.0.0+b11/data/pam250: ASCII text data/staden-2.0.0+b11/data/Makefile: makefile script, ASCII text data/staden-2.0.0+b11/data/alus/ALUA: ASCII text data/staden-2.0.0+b11/data/alus/HUMA1ATP: ASCII text data/staden-2.0.0+b11/data/alus/HUMACHRA7: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-10: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-11: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-12: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-13: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-14: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-15: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-16: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-17: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-18: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-3: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-4: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-5: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-6: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-7: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-8: ASCII text data/staden-2.0.0+b11/data/alus/HUMADAG-9: ASCII text data/staden-2.0.0+b11/data/alus/HUMAGG: ASCII text data/staden-2.0.0+b11/data/alus/HUMALBG: ASCII text data/staden-2.0.0+b11/data/alus/HUMALBG-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMANFA: ASCII text data/staden-2.0.0+b11/data/alus/HUMANFA-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMAPOAI1: ASCII text data/staden-2.0.0+b11/data/alus/HUMAPOAI1-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMAPOAII: ASCII text data/staden-2.0.0+b11/data/alus/HUMAPOAII-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMAPOCII: ASCII text data/staden-2.0.0+b11/data/alus/HUMAPOE4: ASCII text data/staden-2.0.0+b11/data/alus/HUMAPOE4-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMAPOE4-3: ASCII text data/staden-2.0.0+b11/data/alus/HUMAPOE4-4: ASCII text data/staden-2.0.0+b11/data/alus/HUMBLYM1: ASCII text data/staden-2.0.0+b11/data/alus/HUMC1A21: ASCII text data/staden-2.0.0+b11/data/alus/HUMC1A23: ASCII text data/staden-2.0.0+b11/data/alus/HUMC1AIN1: ASCII text data/staden-2.0.0+b11/data/alus/HUMERPA: ASCII text data/staden-2.0.0+b11/data/alus/HUMFIXG: ASCII text data/staden-2.0.0+b11/data/alus/HUMFIXG-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMFIXG-3: ASCII text data/staden-2.0.0+b11/data/alus/HUMFIXG-4: ASCII text data/staden-2.0.0+b11/data/alus/HUMFOL5: ASCII text data/staden-2.0.0+b11/data/alus/HUMFOL5-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMGAST2: ASCII text data/staden-2.0.0+b11/data/alus/HUMGHV: ASCII text data/staden-2.0.0+b11/data/alus/HUMHBA4: ASCII text data/staden-2.0.0+b11/data/alus/HUMHBA4-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMHBA4-3: ASCII text data/staden-2.0.0+b11/data/alus/HUMHBBRT: ASCII text data/staden-2.0.0+b11/data/alus/HUMHBBRT-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMIFNB3: ASCII text data/staden-2.0.0+b11/data/alus/HUMIFNB3-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMIFNB3-3: ASCII text data/staden-2.0.0+b11/data/alus/HUMIFNB3-4: ASCII text data/staden-2.0.0+b11/data/alus/HUMIFNB3-5: ASCII text data/staden-2.0.0+b11/data/alus/HUMIL2R8: ASCII text data/staden-2.0.0+b11/data/alus/HUMINS2: ASCII text data/staden-2.0.0+b11/data/alus/HUMLDLIVS: ASCII text data/staden-2.0.0+b11/data/alus/HUMLDLR: ASCII text data/staden-2.0.0+b11/data/alus/HUMLDLR-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMMHDC3B: ASCII text data/staden-2.0.0+b11/data/alus/HUMMHDRB3: ASCII text data/staden-2.0.0+b11/data/alus/HUMMHDRB3-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMMYCRT: ASCII text data/staden-2.0.0+b11/data/alus/HUMNGFB: ASCII text data/staden-2.0.0+b11/data/alus/HUMPOMC: ASCII text data/staden-2.0.0+b11/data/alus/HUMPOMC-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMPOMC1: ASCII text data/staden-2.0.0+b11/data/alus/HUMPOMC2: ASCII text data/staden-2.0.0+b11/data/alus/HUMPOMC6: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSA1: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSA16: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSA27: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSAB11: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSAB13: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSAB19: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSAB2: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSAB6: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSAB8: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSAOLD: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSAP3: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSKA1: ASCII text data/staden-2.0.0+b11/data/alus/HUMRSKPA1: ASCII text data/staden-2.0.0+b11/data/alus/HUMSLJT1: ASCII text data/staden-2.0.0+b11/data/alus/HUMTBB5: ASCII text data/staden-2.0.0+b11/data/alus/HUMTBB5-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMTBB5-3: ASCII text data/staden-2.0.0+b11/data/alus/HUMTBB5-4: ASCII text data/staden-2.0.0+b11/data/alus/HUMTBB5-5: ASCII text data/staden-2.0.0+b11/data/alus/HUMTBB5-6: ASCII text data/staden-2.0.0+b11/data/alus/HUMTBB5-7: ASCII text data/staden-2.0.0+b11/data/alus/HUMTBBM40: ASCII text data/staden-2.0.0+b11/data/alus/HUMTHBNB: ASCII text data/staden-2.0.0+b11/data/alus/HUMTHBNB-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMTHBNB-3: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-10: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-11: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-12: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-13: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-14: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-15: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-16: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-17: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-18: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-19: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-2: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-20: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-21: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-22: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-3: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-4: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-5: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-6: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-7: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-8: ASCII text data/staden-2.0.0+b11/data/alus/HUMTPA-9: ASCII text data/staden-2.0.0+b11/data/alus/HUMUG2PD: ASCII text data/staden-2.0.0+b11/data/alus/HUMUG2PD-2: ASCII text data/staden-2.0.0+b11/data/alus/M11591: ASCII text data/staden-2.0.0+b11/data/alus/M12036: ASCII text data/staden-2.0.0+b11/data/alus/M12929: ASCII text data/staden-2.0.0+b11/data/alus/M13121: ASCII text data/staden-2.0.0+b11/data/alus/README: ASCII text data/staden-2.0.0+b11/data/alus/consensi: ASCII text data/staden-2.0.0+b11/data/alus/fasta-split: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/data/alus/files: ASCII text data/staden-2.0.0+b11/data/alus/filesp: ASCII text data/staden-2.0.0+b11/data/blast_data/BLOSUM62: ASCII text data/staden-2.0.0+b11/data/blast_data/ecoli.nhr: ASCII text, with no line terminators data/staden-2.0.0+b11/data/blast_data/ecoli.nin: data data/staden-2.0.0+b11/data/blast_data/ecoli.nsq: data data/staden-2.0.0+b11/data/blast_data/gc.val: data data/staden-2.0.0+b11/data/blast_data/seqcode.val: data data/staden-2.0.0+b11/data/gcodes/code_1: ASCII text data/staden-2.0.0+b11/data/gcodes/code_10: ASCII text data/staden-2.0.0+b11/data/gcodes/code_11: ASCII text data/staden-2.0.0+b11/data/gcodes/code_12: ASCII text data/staden-2.0.0+b11/data/gcodes/code_13: ASCII text data/staden-2.0.0+b11/data/gcodes/code_14: ASCII text data/staden-2.0.0+b11/data/gcodes/code_15: ASCII text data/staden-2.0.0+b11/data/gcodes/code_16: ASCII text data/staden-2.0.0+b11/data/gcodes/code_2: ASCII text data/staden-2.0.0+b11/data/gcodes/code_21: ASCII text data/staden-2.0.0+b11/data/gcodes/code_22: ASCII text data/staden-2.0.0+b11/data/gcodes/code_23: ASCII text data/staden-2.0.0+b11/data/gcodes/code_3: ASCII text data/staden-2.0.0+b11/data/gcodes/code_4: ASCII text data/staden-2.0.0+b11/data/gcodes/code_5: ASCII text data/staden-2.0.0+b11/data/gcodes/code_6: ASCII text data/staden-2.0.0+b11/data/gcodes/code_9: ASCII text data/staden-2.0.0+b11/data/gcodes/code_index: ASCII text data/staden-2.0.0+b11/data/vectors/lorist6.seq: ASCII text data/staden-2.0.0+b11/data/vectors/m13mp18.seq: ASCII text data/staden-2.0.0+b11/data/vectors/pBS.seq: ASCII text data/staden-2.0.0+b11/data/vectors/pOTW13.seq: ASCII text data/staden-2.0.0+b11/data/vectors/pgem3zfm.seq: ASCII text data/staden-2.0.0+b11/data/vectors/pgem3zfp.seq: ASCII text data/staden-2.0.0+b11/data/vectors/pgem5zfm.seq: ASCII text data/staden-2.0.0+b11/data/vectors/psc194.seq: ASCII text data/staden-2.0.0+b11/data/vectors/puc18.seq: ASCII text data/staden-2.0.0+b11/debian/README.Debian: ASCII text data/staden-2.0.0+b11/debian/bash_completion/staden: ASCII text data/staden-2.0.0+b11/debian/bin/gap4: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/debian/bin/staden: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/debian/changelog: ASCII text data/staden-2.0.0+b11/debian/clean: ASCII text data/staden-2.0.0+b11/debian/compat: ASCII text data/staden-2.0.0+b11/debian/control: ASCII text data/staden-2.0.0+b11/debian/copyright: ASCII text data/staden-2.0.0+b11/debian/createmanpages: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/debian/doc-base: empty data/staden-2.0.0+b11/debian/icons/gap4.desktop: ASCII text data/staden-2.0.0+b11/debian/icons/gap5.desktop: ASCII text data/staden-2.0.0+b11/debian/icons/icon4bl.svg: SVG Scalable Vector Graphics image data/staden-2.0.0+b11/debian/icons/pregap4.desktop: ASCII text data/staden-2.0.0+b11/debian/icons/trev.desktop: ASCII text data/staden-2.0.0+b11/debian/manpages: ASCII text data/staden-2.0.0+b11/debian/mans/gap4.1: troff or preprocessor input, ASCII text data/staden-2.0.0+b11/debian/mans/gap5.1: troff or preprocessor input, ASCII text data/staden-2.0.0+b11/debian/mans/pregap4.1: troff or preprocessor input, ASCII text data/staden-2.0.0+b11/debian/mans/spin.1: troff or preprocessor input, ASCII text data/staden-2.0.0+b11/debian/mans/trev.1: troff or preprocessor input, ASCII text data/staden-2.0.0+b11/debian/patches/autoconfig.patch: unified diff output, ASCII text data/staden-2.0.0+b11/debian/patches/enable_setting_stadenroot.patch: unified diff output, ASCII text data/staden-2.0.0+b11/debian/patches/fix_awk.patch: unified diff output, ASCII text data/staden-2.0.0+b11/debian/patches/fix_implicit_declaration.patch: unified diff output, ASCII text data/staden-2.0.0+b11/debian/patches/fix_tcl_path.patch: unified diff output, ASCII text data/staden-2.0.0+b11/debian/patches/include_xalloc.patch: unified diff output, ASCII text data/staden-2.0.0+b11/debian/patches/make_help_menus_work.patch: unified diff output, ASCII text data/staden-2.0.0+b11/debian/patches/series: ASCII text data/staden-2.0.0+b11/debian/patches/spelling.patch: unified diff output, ASCII text data/staden-2.0.0+b11/debian/patches/use_mkstemp_instead_of_tmpnam.patch: unified diff output, ASCII text data/staden-2.0.0+b11/debian/rules: a /usr/bin/make -f script, ASCII text executable data/staden-2.0.0+b11/debian/source/format: ASCII text data/staden-2.0.0+b11/debian/staden-common.install: ASCII text data/staden-2.0.0+b11/debian/staden-common.lintian-overrides: ASCII text data/staden-2.0.0+b11/debian/staden.install: ASCII text data/staden-2.0.0+b11/debian/staden.links: ASCII text data/staden-2.0.0+b11/debian/upstream/metadata: ASCII text data/staden-2.0.0+b11/debian/watch: ASCII text data/staden-2.0.0+b11/.pc/.version: ASCII text data/staden-2.0.0+b11/.pc/.quilt_patches: ASCII text data/staden-2.0.0+b11/.pc/.quilt_series: ASCII text data/staden-2.0.0+b11/.pc/applied-patches: ASCII text data/staden-2.0.0+b11/.pc/make_help_menus_work.patch/gap4/gaprc_menu_mito: ASCII text data/staden-2.0.0+b11/.pc/make_help_menus_work.patch/pregap4/pregap4rc: ASCII text data/staden-2.0.0+b11/.pc/fix_tcl_path.patch/tk_utils/help_ext.tcl: Tcl/Tk script, ASCII text executable data/staden-2.0.0+b11/.pc/fix_tcl_path.patch/tk_utils/help_galeon.tcl: Tcl/Tk script, ASCII text executable data/staden-2.0.0+b11/.pc/fix_tcl_path.patch/tk_utils/help_int.tcl: Tcl/Tk script, ASCII text executable data/staden-2.0.0+b11/.pc/fix_tcl_path.patch/tk_utils/help_netscape.tcl: Tcl/Tk script, ASCII text executable data/staden-2.0.0+b11/.pc/fix_awk.patch/scripts/fasta-split: new awk script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/gap5/gap5.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/gap5/gap5_cmd.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/gap5/tg_index.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/gap5/tg_view.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/gap4/gap4.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/pregap4/pregap4.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/spin/spin.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/trev/trev.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/prefinish/finish_sanger: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/prefinish/prefinish.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/copy_reads/copy_reads.in: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/enable_setting_stadenroot.patch/spin_emboss/create_emboss_files: POSIX shell script, ASCII text executable data/staden-2.0.0+b11/.pc/include_xalloc.patch/hetins/hetins.c: C source, ASCII text data/staden-2.0.0+b11/.pc/include_xalloc.patch/stops/stops.c: C source, ASCII text data/staden-2.0.0+b11/.pc/use_mkstemp_instead_of_tmpnam.patch/tk_utils/capture.c: C source, ASCII text data/staden-2.0.0+b11/.pc/fix_implicit_declaration.patch/eba/conf.c: C source, ASCII text data/staden-2.0.0+b11/.pc/autoconfig.patch/ac_stubs/libcurl_check_config.m4: M4 macro processor script, ASCII text data/staden-2.0.0+b11/.pc/autoconfig.patch/configure.in: M4 macro processor script, ASCII text, with very long lines data/staden-2.0.0+b11/.pc/spelling.patch/gap5/export_contigs.c: C source, ASCII text data/staden-2.0.0+b11/.pc/spelling.patch/gap5/sam_index.c: C source, ASCII text data/staden-2.0.0+b11/.pc/spelling.patch/gap5/tg_iface_g.c: C source, ASCII text data/staden-2.0.0+b11/.pc/spelling.patch/gap5/tg_index.c: C source, ASCII text data/staden-2.0.0+b11/configure.in: M4 macro processor script, ASCII text, with very long lines