data/soapdenovo2-242+dfsg/.travis.yml: ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/INSTALL: ASCII text data/soapdenovo2-242+dfsg/LICENSE: ASCII text data/soapdenovo2-242+dfsg/README.md: HTML document, ASCII text, with very long lines data/soapdenovo2-242+dfsg/VERSION: ASCII text data/soapdenovo2-242+dfsg/example.config: ASCII text data/soapdenovo2-242+dfsg/fusion/Makefile: makefile script, ASCII text data/soapdenovo2-242+dfsg/fusion/attachPEinfo.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/bundle.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/check.c: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/fusion/connect.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/darray.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/fib.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/fibHeap.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/hashFunction.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/check.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/darray.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/def2.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/dfib.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/dfibHeap.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/dfibpriv.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/extfunc.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/fusion/inc/extfunc2.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/extvab.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/fusion/inc/fib.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/fibHeap.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/fibpriv.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/general.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/global.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/newhash.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/nuc.h: ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/fusion/inc/stack.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/stdinc.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/types.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/inc/def.h: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/kmer.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/lib.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/loadGraph.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/localAsm.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/main.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/map.c: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/fusion/mem_manager.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/newhash.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/orderContig.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/output_scaffold.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/potential.c: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/fusion/prepare.c: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/fusion/prlHashCtg.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/prlRead2Ctg.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/prlReadFillGap.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/read2scaf.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/readseq1by1.c: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/fusion/scaffold.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/searchPath.c: C source, ASCII text data/soapdenovo2-242+dfsg/fusion/seq.c: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/fusion/stack.c: C source, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/build_edge.cpp: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/build_graph.cpp: C source, ISO-8859 text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/build_preArc.cpp: C source, ISO-8859 text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/convert_soapdenovo.cpp: C source, ISO-8859 text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/build_edge.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/build_graph.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/build_preArc.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/convert_soapdenovo.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/core.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/faidx.h: C source, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/inc/glf.h: C source, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/inc/global.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/io_func.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/knetfile.h: C source, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/inc/kstring.h: C source, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/inc/razf.h: C source, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/inc/sam_header.h: C source, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/inc/sam_view.h: C source, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/inc/seq_util.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/sparse_kmer.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/xcurses.h: C source, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/inc/stdinc.h: C++ source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/inc/multi_threads.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/io_func.cpp: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/make.sh: ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/multi_threads.cpp: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/Makefile: automake makefile script, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/main.cpp: C source, ASCII text data/soapdenovo2-242+dfsg/sparsePregraph/pregraph_sparse.cpp: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/sparsePregraph/global.cpp: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/standardPregraph/arc.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/bubble.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/change.log: ASCII text, with very long lines data/soapdenovo2-242+dfsg/standardPregraph/check.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/compactEdge.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/concatenateEdge.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/connect.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/contig.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/cutTipPreGraph.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/cutTip_graph.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/cutTip_graph2.c: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/standardPregraph/darray.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/dfib.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/dfibHeap.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/fib.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/fibHeap.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/check.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/darray.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/def2.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/dfib.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/dfibHeap.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/dfibpriv.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/extfunc2.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/extvab.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/faidx.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/fib.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/fibHeap.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/fibpriv.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/glf.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/global.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/kmerhash.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/knetfile.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/kstring.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/newhash.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/nuc.h: ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/razf.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/sam_header.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/sam_view.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/stack.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/types.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/xcurses.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/stdinc.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/extfunc.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/inc/def.h: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/iterate.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/kmerhash.c: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/standardPregraph/lib.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/linearEdge.c: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/standardPregraph/loadGraph.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/loadPath.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/localAsm.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/make.sh: ASCII text data/soapdenovo2-242+dfsg/standardPregraph/makeclean.sh: ASCII text data/soapdenovo2-242+dfsg/standardPregraph/map.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/mem_manager.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/newhash.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/output_contig.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/output_scaffold.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/pregraph.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/prlHashCtg.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/prlHashReads.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/prlRead2path.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/read2edge.c: C source, ISO-8859 text, with CRLF line terminators data/soapdenovo2-242+dfsg/standardPregraph/read2scaf.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/readInterval.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/readseq1by1.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/scaffold.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/searchPath.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/seperateScaff.pl: Perl script text executable data/soapdenovo2-242+dfsg/standardPregraph/seq.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/splitReps.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/stack.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/hashFunction.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/attachPEinfo.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/kmer.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/loadPreGraph.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/node2edge.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/prlRead2Ctg.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/orderContig.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/output_pregraph.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/prlReadFillGap.c: C source, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/Makefile: automake makefile script, ASCII text data/soapdenovo2-242+dfsg/standardPregraph/main.c: C source, ASCII text, with very long lines data/soapdenovo2-242+dfsg/debian/README.Debian: ASCII text data/soapdenovo2-242+dfsg/debian/README.test: ASCII text data/soapdenovo2-242+dfsg/debian/changelog: ASCII text data/soapdenovo2-242+dfsg/debian/control: ASCII text data/soapdenovo2-242+dfsg/debian/copyright: ASCII text data/soapdenovo2-242+dfsg/debian/docs: ASCII text data/soapdenovo2-242+dfsg/debian/install: ASCII text data/soapdenovo2-242+dfsg/debian/links: ASCII text data/soapdenovo2-242+dfsg/debian/patches/add_hardening: unified diff output, ASCII text data/soapdenovo2-242+dfsg/debian/patches/fix_compilation: unified diff output, ASCII text, with CRLF, LF line terminators data/soapdenovo2-242+dfsg/debian/patches/fix_usage_name: unified diff output, ASCII text data/soapdenovo2-242+dfsg/debian/patches/gcc-10.patch: unified diff output, ASCII text, with CRLF, LF line terminators data/soapdenovo2-242+dfsg/debian/patches/reproducible: unified diff output, ASCII text, with CRLF, LF line terminators data/soapdenovo2-242+dfsg/debian/patches/series: ASCII text data/soapdenovo2-242+dfsg/debian/patches/use_debian_zlib: unified diff output, ASCII text data/soapdenovo2-242+dfsg/debian/patches/use_libsam: unified diff output, ASCII text, with CRLF, LF line terminators data/soapdenovo2-242+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/soapdenovo2-242+dfsg/debian/salsa-ci.yml: ASCII text data/soapdenovo2-242+dfsg/debian/soapdenovo2.1: troff or preprocessor input, ASCII text, with very long lines data/soapdenovo2-242+dfsg/debian/soapdenovo2.manpages: ASCII text data/soapdenovo2-242+dfsg/debian/source/format: ASCII text data/soapdenovo2-242+dfsg/debian/source/include-binaries: ASCII text data/soapdenovo2-242+dfsg/debian/tests/control: ASCII text data/soapdenovo2-242+dfsg/debian/tests/run-unit-test: POSIX shell script, ASCII text executable data/soapdenovo2-242+dfsg/debian/tests/test-data/SRR2480581.fastq.tar.gz: gzip compressed data, last modified: Fri Jun 8 17:53:16 2018, from Unix, original size modulo 2^32 2775040 data/soapdenovo2-242+dfsg/debian/upstream/metadata: ASCII text data/soapdenovo2-242+dfsg/debian/watch: ASCII text data/soapdenovo2-242+dfsg/.pc/.version: ASCII text data/soapdenovo2-242+dfsg/.pc/.quilt_patches: ASCII text data/soapdenovo2-242+dfsg/.pc/.quilt_series: ASCII text data/soapdenovo2-242+dfsg/.pc/applied-patches: ASCII text data/soapdenovo2-242+dfsg/.pc/use_libsam/sparsePregraph/Makefile: automake makefile script, ASCII text data/soapdenovo2-242+dfsg/.pc/use_libsam/sparsePregraph/inc/stdinc.h: C++ source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/.pc/use_libsam/standardPregraph/Makefile: automake makefile script, ASCII text data/soapdenovo2-242+dfsg/.pc/use_libsam/standardPregraph/inc/stdinc.h: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/fix_compilation/sparsePregraph/pregraph_sparse.cpp: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/.pc/fix_compilation/sparsePregraph/inc/multi_threads.h: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/.pc/fix_compilation/Makefile: automake makefile script, ASCII text data/soapdenovo2-242+dfsg/.pc/fix_usage_name/standardPregraph/main.c: C source, ASCII text, with very long lines data/soapdenovo2-242+dfsg/.pc/add_hardening/standardPregraph/Makefile: automake makefile script, ASCII text data/soapdenovo2-242+dfsg/.pc/add_hardening/sparsePregraph/Makefile: automake makefile script, ASCII text data/soapdenovo2-242+dfsg/.pc/add_hardening/Makefile: automake makefile script, ASCII text data/soapdenovo2-242+dfsg/.pc/use_debian_zlib/standardPregraph/hashFunction.c: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/use_debian_zlib/standardPregraph/inc/extfunc.h: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/use_debian_zlib/standardPregraph/attachPEinfo.c: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/use_debian_zlib/standardPregraph/kmer.c: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/use_debian_zlib/standardPregraph/loadPreGraph.c: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/use_debian_zlib/standardPregraph/node2edge.c: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/use_debian_zlib/standardPregraph/prlRead2Ctg.c: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/use_debian_zlib/standardPregraph/orderContig.c: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/use_debian_zlib/standardPregraph/output_pregraph.c: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/use_debian_zlib/standardPregraph/prlReadFillGap.c: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/reproducible/sparsePregraph/Makefile: automake makefile script, ASCII text data/soapdenovo2-242+dfsg/.pc/reproducible/sparsePregraph/main.cpp: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/reproducible/sparsePregraph/pregraph_sparse.cpp: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/.pc/reproducible/standardPregraph/Makefile: automake makefile script, ASCII text data/soapdenovo2-242+dfsg/.pc/reproducible/standardPregraph/main.c: C source, ASCII text, with very long lines data/soapdenovo2-242+dfsg/.pc/gcc-10.patch/sparsePregraph/global.cpp: C source, ASCII text, with CRLF line terminators data/soapdenovo2-242+dfsg/.pc/gcc-10.patch/standardPregraph/inc/def.h: C source, ASCII text data/soapdenovo2-242+dfsg/.pc/gcc-10.patch/fusion/inc/def.h: C source, ASCII text data/soapdenovo2-242+dfsg/Makefile: automake makefile script, ASCII text