data/seqsero-1.0.1+dfsg/LICENSE:                                                           ASCII text
data/seqsero-1.0.1+dfsg/README.md:                                                         ASCII text
data/seqsero-1.0.1+dfsg/User_manual.pdf:                                                   PDF document, version 1.5
data/seqsero-1.0.1+dfsg/database/FliC_Family_b,d,j_special_genes.fasta:                    ASCII text, with very long lines
data/seqsero-1.0.1+dfsg/database/FliC_Family_fg_special.fasta:                             ASCII text, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/FliC_Family_g_special_genes.fasta:                        ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/FliC_Family_k,z_special_genes.fasta:                      ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/FliC_Family_k_z58_special_genes.fasta:                    ASCII text, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/FliC_Family_l,v_special_genes.fasta:                      ASCII text, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/FliC_Family_r,i_special_genes_short.fasta:                ASCII text, with very long lines
data/seqsero-1.0.1+dfsg/database/FliC_Family_z36z38_special_genes.fasta:                   ASCII text, with very long lines
data/seqsero-1.0.1+dfsg/database/FliC_Family_z44_k_special_genes.fasta:                    ASCII text
data/seqsero-1.0.1+dfsg/database/FliC_Family_z4z23_special_genes.fasta:                    ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/FliC_f_g_s_whole.fasta:                                   ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/FljB_1_2_7_whole.fasta:                                   ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/FljB_1_2_7_whole.fasta.amb:                               ASCII text
data/seqsero-1.0.1+dfsg/database/FljB_1_2_7_whole.fasta.ann:                               ASCII text
data/seqsero-1.0.1+dfsg/database/FljB_1_2_7_whole.fasta.bwt:                               data
data/seqsero-1.0.1+dfsg/database/FljB_1_2_7_whole.fasta.pac:                               data
data/seqsero-1.0.1+dfsg/database/FljB_1_2_7_whole.fasta.sa:                                data
data/seqsero-1.0.1+dfsg/database/FljB_Family_1_special_genes_all.fasta:                    ASCII text, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/FljB_Family_e_special_genes.fasta:                        ASCII text
data/seqsero-1.0.1+dfsg/database/FljB_Family_k,z_special_genes.fasta:                      ASCII text, with very long lines
data/seqsero-1.0.1+dfsg/database/FljB_Family_l,v_special_genes.fasta:                      ASCII text
data/seqsero-1.0.1+dfsg/database/FljB_Family_l,w_special_genes.fasta:                      ASCII text
data/seqsero-1.0.1+dfsg/database/FljB_Family_z_special_genes.fasta:                        ASCII text, with very long lines
data/seqsero-1.0.1+dfsg/database/FljB_l,z13,z28_whole.fasta:                               ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/FljB_z6_whole.fasta:                                      ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/H_combine_update_9_03_2014_new.fasta:                     ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/H_new_fliC_protein_database.fasta:                        ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/H_new_fljB_protein_database.fasta:                        ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/H_newest_database.fasta:                                  ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/O_3,10_and_1,3,19_spe.fasta:                              ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/O_4_wzy_but_not_in_rfb.fasta:                             ASCII text, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/ParaA_rfb.fasta:                                          ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/ParaA_rfb.fasta.amb:                                      ASCII text
data/seqsero-1.0.1+dfsg/database/ParaA_rfb.fasta.ann:                                      ASCII text
data/seqsero-1.0.1+dfsg/database/ParaA_rfb.fasta.bwt:                                      data
data/seqsero-1.0.1+dfsg/database/ParaA_rfb.fasta.pac:                                      data
data/seqsero-1.0.1+dfsg/database/ParaA_rfb.fasta.sa:                                       data
data/seqsero-1.0.1+dfsg/database/Typhimurium_LT2_gnd_galF.fasta:                           ASCII text, with very long lines
data/seqsero-1.0.1+dfsg/database/complete_oafA.fasta:                                      ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/fliC_b_whole.fasta:                                       ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/fliC_k,z_whole.fasta:                                     ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/fliC_l_z13_whole.fasta:                                   ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/fliC_r_whole.fasta:                                       ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/fliC_r_whole.fasta.amb:                                   ASCII text
data/seqsero-1.0.1+dfsg/database/fliC_r_whole.fasta.ann:                                   ASCII text
data/seqsero-1.0.1+dfsg/database/fliC_r_whole.fasta.bwt:                                   data
data/seqsero-1.0.1+dfsg/database/fliC_r_whole.fasta.pac:                                   data
data/seqsero-1.0.1+dfsg/database/fliC_r_whole.fasta.sa:                                    data
data/seqsero-1.0.1+dfsg/database/fliC_z36,z38_whole.fasta:                                 ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/fliC_z4,z23_family.fasta:                                 ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/fliC_z4z23_whole.fasta:                                   ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/fliC_z58_k_special_sequences.fasta:                       ASCII text, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/fljB_e,n,z15_whole.fasta:                                 ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/new_Oserotype.fasta:                                      ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/oafA_of_O4_O5.fasta:                                      ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/special_O_genes.fasta:                                    ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/special_new_O_genes.fasta:                                ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/specific_genes.fasta:                                     ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/database/tyr_of_O2_O9.fasta:                                       ASCII text, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/libs/splitPairedEndReads.pl:                                       ASCII text
data/seqsero-1.0.1+dfsg/libs/split_interleaved_fastq.pl:                                   Perl script text executable
data/seqsero-1.0.1+dfsg/libs/BWA_analysis_H_update_new_family_dependent.py:                Python script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/libs/BWA_analysis_O_new_dependent.py:                              Python script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/libs/H_combination_output_analysis.py:                             Python script, ASCII text executable
data/seqsero-1.0.1+dfsg/libs/Initial_Conditions.py:                                        Python script, ASCII text executable, with very long lines
data/seqsero-1.0.1+dfsg/libs/Initial_functions.py:                                         Python script, ASCII text executable
data/seqsero-1.0.1+dfsg/libs/Otype_determine_analysis.py:                                  Python script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/libs/compare_and_change_two_fastq_id.py:                           Python script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/libs/deletion_compare.py:                                          Generic INItialization configuration [2]\015
data/seqsero-1.0.1+dfsg/libs/run_auto_All_for_assemblies.py:                               Python script, ASCII text executable, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/libs/run_auto_All_for_web_multi_revise.py:                         Python script, ASCII text executable, with very long lines
data/seqsero-1.0.1+dfsg/libs/special_gene_test_assemblies.py:                              Python script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/primers/seq_primer_fliC.txt:                                       ASCII text
data/seqsero-1.0.1+dfsg/primers/seq_primer_fljB.txt:                                       ASCII text
data/seqsero-1.0.1+dfsg/debian/README.Debian:                                              ASCII text
data/seqsero-1.0.1+dfsg/debian/bin/seqsero_batch_pair-end:                                 POSIX shell script, ASCII text executable
data/seqsero-1.0.1+dfsg/debian/changelog:                                                  ASCII text
data/seqsero-1.0.1+dfsg/debian/control:                                                    ASCII text
data/seqsero-1.0.1+dfsg/debian/copyright:                                                  ASCII text
data/seqsero-1.0.1+dfsg/debian/doc-base:                                                   ASCII text
data/seqsero-1.0.1+dfsg/debian/docs:                                                       ASCII text
data/seqsero-1.0.1+dfsg/debian/install:                                                    ASCII text
data/seqsero-1.0.1+dfsg/debian/links:                                                      ASCII text
data/seqsero-1.0.1+dfsg/debian/manpages:                                                   ASCII text
data/seqsero-1.0.1+dfsg/debian/patches/2to3.patch:                                         unified diff output, ASCII text, with very long lines, with CRLF, LF line terminators
data/seqsero-1.0.1+dfsg/debian/patches/fix_perl_interpreter.patch:                         unified diff output, ASCII text, with CRLF, LF line terminators
data/seqsero-1.0.1+dfsg/debian/patches/fix_usage.patch:                                    unified diff output, ASCII text
data/seqsero-1.0.1+dfsg/debian/patches/series:                                             ASCII text
data/seqsero-1.0.1+dfsg/debian/rules:                                                      a /usr/bin/make -f script, ASCII text executable
data/seqsero-1.0.1+dfsg/debian/seqsero.1:                                                  troff or preprocessor input, ASCII text
data/seqsero-1.0.1+dfsg/debian/seqsero_batch_pair-end.1:                                   troff or preprocessor input, ASCII text
data/seqsero-1.0.1+dfsg/debian/source/format:                                              ASCII text
data/seqsero-1.0.1+dfsg/debian/upstream/metadata:                                          ASCII text
data/seqsero-1.0.1+dfsg/debian/watch:                                                      ASCII text
data/seqsero-1.0.1+dfsg/.pc/.version:                                                      ASCII text
data/seqsero-1.0.1+dfsg/.pc/.quilt_patches:                                                ASCII text
data/seqsero-1.0.1+dfsg/.pc/.quilt_series:                                                 ASCII text
data/seqsero-1.0.1+dfsg/.pc/applied-patches:                                               ASCII text
data/seqsero-1.0.1+dfsg/.pc/fix_perl_interpreter.patch/libs/split_interleaved_fastq.pl:    a /usr/bin/perl-w script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/.pc/fix_usage.patch/SeqSero.py:                                    Python script, ASCII text executable
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/SeqSero.py:                                         Python script, ASCII text executable
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/BWA_analysis_H_update_new_family_dependent.py: Python script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/BWA_analysis_O_new_dependent.py:               Python script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/H_combination_output_analysis.py:              Python script, ASCII text executable
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/Initial_Conditions.py:                         Python script, ASCII text executable, with very long lines
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/Initial_functions.py:                          Python script, ASCII text executable
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/Otype_determine_analysis.py:                   Python script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/compare_and_change_two_fastq_id.py:            Python script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/deletion_compare.py:                           Generic INItialization configuration [2]\015
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/run_auto_All_for_assemblies.py:                Python script, ASCII text executable, with very long lines, with CRLF line terminators
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/run_auto_All_for_web_multi_revise.py:          Python script, ASCII text executable, with very long lines
data/seqsero-1.0.1+dfsg/.pc/2to3.patch/libs/special_gene_test_assemblies.py:               Python script, ASCII text executable, with CRLF line terminators
data/seqsero-1.0.1+dfsg/SeqSero.py:                                                        Python script, ASCII text executable