data/rdp-classifier-2.10.2/.gitignore: ASCII text data/rdp-classifier-2.10.2/LICENSE: ASCII text data/rdp-classifier-2.10.2/README: ASCII text, with very long lines data/rdp-classifier-2.10.2/build.xml: XML 1.0 document, ASCII text data/rdp-classifier-2.10.2/ivy.xml: ASCII text data/rdp-classifier-2.10.2/manifest.mf: ASCII text data/rdp-classifier-2.10.2/nbproject/build-impl.xml: XML 1.0 document, ASCII text, with very long lines data/rdp-classifier-2.10.2/nbproject/genfiles.properties: ASCII text data/rdp-classifier-2.10.2/nbproject/project.properties: ASCII text data/rdp-classifier-2.10.2/nbproject/project.xml: XML 1.0 document, ASCII text data/rdp-classifier-2.10.2/samplefiles/Armatimonadetes.fasta: ASCII text, with very long lines data/rdp-classifier-2.10.2/samplefiles/Native_1_4_A_trimmed.fasta: ASCII text, with very long lines data/rdp-classifier-2.10.2/samplefiles/USGA_2_4_B_trimmed.fasta: ASCII text, with very long lines data/rdp-classifier-2.10.2/samplefiles/new_trainset.fasta: ASCII text, with very long lines data/rdp-classifier-2.10.2/samplefiles/new_trainset_db_taxid.txt: ASCII text data/rdp-classifier-2.10.2/samplefiles/rRNAClassifier.properties: ASCII text data/rdp-classifier-2.10.2/samplefiles/rrnDBv4.2.2_copynumber.txt: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/ClassificationResult.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/Classifier.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/ClassifierCmd.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/GenusWordConditionalProb.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/HierarchyTree.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/RankAssignment.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/ShortSequenceException.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/TrainingDataException.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/TrainingInfo.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/cli/ClassifierMain.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/cli/CmdOptions.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/AbstractNode.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/ComparisonBrowserBean.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/ComparisonBrowserNode.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/ComparisonCmd.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/ComparisonResultTreeSet.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/PixelCalculatorBean.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/Score.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/SeqErrorBean.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/SeqInfo.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/SigCalculator.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/Taxon.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/TaxonTree.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/UncNode.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/Ztable.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/io/ClassificationResultFormatter.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/io/GenusWordProbFileParser.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/io/LogWordPriorFileParser.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/io/ProbIndexFileParser.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/io/TreeFileParser.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/rrnaclassifier/ClassificationParser.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/ClassifierTraineeMaker.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/CopyNumberParser.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/LineageSequence.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/LineageSequenceParser.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/NameRankDupException.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/RawGenusWordConditionalProb.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/RawHierarchyTree.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/Taxonomy.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/TreeFactory.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/AddLogs.java: C++ source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/CorrectAssignment.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/DecisionMaker.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/HierarchyTree.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/NBClassifier.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/StatusCount.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/StatusCountUtils.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/Taxonomy.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/TreeFactory.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/ValidClassificationResultFacade.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/ValidationClassificationResult.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/CrossValidate.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/CrossValidateMain.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/crossvalidate/RdmSelectTaxon.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/BoxPlotUtils.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/CompareTrainingSets.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/PairwiseSeqDistance.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/TaxaSimilarityMain.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/CompareMisclassified.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/LeaveOneOutTester.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/LeaveOneOutTesterMain.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/FindWindowFrame.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/MainMovingWindow.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/Window.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/WindowTester.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/utils/ClassifierFactory.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/utils/ClassifierSequence.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/utils/HierarchyVersion.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/MCSample.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/MCSamplePrintUtil.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/MCSampleResult.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/Main.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/MergeTaxonCount.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/MultiClassifier.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/MultiClassifierResult.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/Reprocess.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/gridware/ClassifierGridware.java: ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/taxon/MCTaxon.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/visitors/DefaultPrintVisitor.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/visitors/EstimateSPrintVisitor.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/taxatree/UnifracTree.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/taxatree/utils/ClassifierTreeBuilder.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/unifrac/Unifrac.java: C source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/unifrac/UnifracTaxon.java: Java source, ASCII text data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/unifrac/UnifracTreeBuilder.java: Java source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/rrnaclassifier/ClassifierTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/rrnaclassifier/HierarchyTreeTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/rrnaclassifier/ParsedSequenceTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/rrnaclassifier/TrainingInfoTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/rrnaclassifier/TreeFileParserTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/GoodWordIteratorTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/RawHierarchyTreeTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/RawSequenceParserTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/TrainSuite.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/TreeFactoryTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/validation/AddLogsTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/validation/ClassifierTestSuite.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/validation/DecisionMakerTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/validation/GoodWordIteratorTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/validation/HierarchyTreeTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/validation/NBClassifierTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/validation/SequenceParserTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/validation/TreeFactoryTest.java: C source, ASCII text data/rdp-classifier-2.10.2/test/test/classifier/sample2.fasta: ASCII text, with very long lines data/rdp-classifier-2.10.2/test/test/classifier/testClassifier.properties: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/testDMtaxon.txt: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/testDMtrain.fasta: ASCII text, with very long lines data/rdp-classifier-2.10.2/test/test/classifier/testGenus_probList.txt: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/testLogWordPrior.txt: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/testNBClassifierSet.fasta: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/testProbIndex.txt: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/testQuerySeq.fasta: ASCII text, with very long lines data/rdp-classifier-2.10.2/test/test/classifier/testSeqParser.fasta: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/testTaxon.txt: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/testTaxonForQuerySeq.txt: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/testTrainingSet.fasta: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/testTreeFile.xml: ASCII text data/rdp-classifier-2.10.2/test/test/classifier/test_bergeyTrainingTree.xml: ASCII text data/rdp-classifier-2.10.2/debian/README.Debian: ASCII text data/rdp-classifier-2.10.2/debian/bin/rdp_classifier: POSIX shell script, ASCII text executable data/rdp-classifier-2.10.2/debian/changelog: ASCII text data/rdp-classifier-2.10.2/debian/compat: ASCII text data/rdp-classifier-2.10.2/debian/control: ASCII text data/rdp-classifier-2.10.2/debian/copyright: ASCII text data/rdp-classifier-2.10.2/debian/junit.xml: exported SGML document, ASCII text data/rdp-classifier-2.10.2/debian/manpages: ASCII text data/rdp-classifier-2.10.2/debian/patches/fix_java9_compilation.patch: unified diff output, ASCII text data/rdp-classifier-2.10.2/debian/patches/series: ASCII text data/rdp-classifier-2.10.2/debian/rdp-classifier-doc.examples: ASCII text data/rdp-classifier-2.10.2/debian/rdp-classifier-doc.javadoc: ASCII text data/rdp-classifier-2.10.2/debian/rdp-classifier.dirs: ASCII text data/rdp-classifier-2.10.2/debian/rdp-classifier.docs: ASCII text data/rdp-classifier-2.10.2/debian/rdp-classifier.examples: ASCII text data/rdp-classifier-2.10.2/debian/rdp-classifier.install: ASCII text data/rdp-classifier-2.10.2/debian/rdp-classifier.links: ASCII text data/rdp-classifier-2.10.2/debian/rdp-classifier.manifest: ASCII text data/rdp-classifier-2.10.2/debian/rdp_classifier.1: troff or preprocessor input, ASCII text data/rdp-classifier-2.10.2/debian/rules: a /usr/bin/make -f script, ASCII text executable data/rdp-classifier-2.10.2/debian/scripts/fetch_fungal_data.sh: POSIX shell script, ASCII text executable data/rdp-classifier-2.10.2/debian/source/format: ASCII text data/rdp-classifier-2.10.2/debian/upstream/metadata: ASCII text data/rdp-classifier-2.10.2/debian/watch: ASCII text data/rdp-classifier-2.10.2/.pc/.version: ASCII text data/rdp-classifier-2.10.2/.pc/.quilt_patches: ASCII text data/rdp-classifier-2.10.2/.pc/.quilt_series: ASCII text data/rdp-classifier-2.10.2/.pc/applied-patches: ASCII text data/rdp-classifier-2.10.2/.pc/fix_java9_compilation.patch/test/edu/msu/cme/rdp/classifier/rrnaclassifier/TrainingInfoTest.java: C source, ASCII text data/rdp-classifier-2.10.2/.pc/fix_java9_compilation.patch/test/edu/msu/cme/rdp/classifier/rrnaclassifier/TreeFileParserTest.java: C source, ASCII text