data/r-other-ascat-2.5.2/.gitignore: ASCII text data/r-other-ascat-2.5.2/ASCAT/.Rbuildignore: ASCII text data/r-other-ascat-2.5.2/ASCAT/DESCRIPTION: ASCII text data/r-other-ascat-2.5.2/ASCAT/NAMESPACE: ASCII text data/r-other-ascat-2.5.2/ASCAT/R/ascat.R: ASCII text data/r-other-ascat-2.5.2/ASCAT/R/asmultipcf.R: ASCII text data/r-other-ascat-2.5.2/ASCAT/inst/extdata/normal.BAF.txt: ASCII text data/r-other-ascat-2.5.2/ASCAT/inst/extdata/normal.logR.txt: ASCII text data/r-other-ascat-2.5.2/ASCAT/inst/extdata/singlenormal.BAF.txt: ASCII text data/r-other-ascat-2.5.2/ASCAT/inst/extdata/singlenormal.logR.txt: ASCII text data/r-other-ascat-2.5.2/ASCAT/inst/extdata/tumour.BAF.txt: ASCII text data/r-other-ascat-2.5.2/ASCAT/inst/extdata/tumour.logR.txt: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.GCcorrect.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.asmultipcf.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.aspcf.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.loadData.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.plotAscatProfile.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.plotGenotypes.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.plotNonRounded.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.plotRawData.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.plotSegmentedData.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.plotSunrise.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.predictGermlineGenotypes.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/ascat.runAscat.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/base.gw.plot.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/make_segments.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/predictGermlineHomozygousStretches.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/man/runASCAT.Rd: ASCII text data/r-other-ascat-2.5.2/ASCAT/vignettes/S1.BAF.PCFed.txt: ASCII text data/r-other-ascat-2.5.2/ASCAT/vignettes/S1.LogR.PCFed.txt: ASCII text data/r-other-ascat-2.5.2/ASCAT/vignettes/S2.BAF.PCFed.txt: ASCII text data/r-other-ascat-2.5.2/ASCAT/vignettes/S2.LogR.PCFed.txt: ASCII text data/r-other-ascat-2.5.2/ASCAT/vignettes/asmultipcf-vignette.Rmd: ASCII text, with very long lines data/r-other-ascat-2.5.2/ASCAT/vignettes/asmultipcf-vignette.html: HTML document, ASCII text, with very long lines data/r-other-ascat-2.5.2/ExampleData/ASCAT_examplePipeline.R: ASCII text data/r-other-ascat-2.5.2/ExampleData/ASCAT_fromCELfiles.R: ASCII text data/r-other-ascat-2.5.2/ExampleData/Germline_BAF.txt: ASCII text, with very long lines data/r-other-ascat-2.5.2/ExampleData/Germline_LogR.txt: ASCII text, with very long lines data/r-other-ascat-2.5.2/ExampleData/Tumor_BAF.txt: ASCII text, with very long lines data/r-other-ascat-2.5.2/ExampleData/Tumor_LogR.txt: ASCII text, with very long lines data/r-other-ascat-2.5.2/README.md: ASCII text data/r-other-ascat-2.5.2/gcProcessing/.DS_Store: Apple Desktop Services Store data/r-other-ascat-2.5.2/gcProcessing/GCfileCreation.sh: Bourne-Again shell script, ASCII text executable data/r-other-ascat-2.5.2/gcProcessing/README.txt: UTF-8 Unicode text data/r-other-ascat-2.5.2/gcProcessing/createGCcontentFile.R: ASCII text data/r-other-ascat-2.5.2/gcProcessing/createWindowBed.pl: Perl script text executable data/r-other-ascat-2.5.2/gcProcessing/hg19.chrom.sizes: ASCII text data/r-other-ascat-2.5.2/man/ASCAT-manual.pdf: PDF document, version 1.5 data/r-other-ascat-2.5.2/debian/changelog: UTF-8 Unicode text data/r-other-ascat-2.5.2/debian/control: ASCII text data/r-other-ascat-2.5.2/debian/copyright: ASCII text data/r-other-ascat-2.5.2/debian/rules: a /usr/bin/make -f script, ASCII text executable data/r-other-ascat-2.5.2/debian/salsa-ci.yml: ASCII text data/r-other-ascat-2.5.2/debian/source/format: ASCII text data/r-other-ascat-2.5.2/debian/upstream/metadata: UTF-8 Unicode text data/r-other-ascat-2.5.2/debian/watch: ASCII text data/r-other-ascat-2.5.2/.pc/.version: ASCII text data/r-other-ascat-2.5.2/.pc/.quilt_patches: ASCII text data/r-other-ascat-2.5.2/.pc/.quilt_series: ASCII text data/r-other-ascat-2.5.2/.pc/applied-patches: empty