data/r-cran-qtl-1.46-2/NAMESPACE: ASCII text data/r-cran-qtl-1.46-2/README.md: ASCII text data/r-cran-qtl-1.46-2/data/bristleX.RData: bzip2 compressed data, block size = 900k data/r-cran-qtl-1.46-2/data/fake.f2.RData: bzip2 compressed data, block size = 900k data/r-cran-qtl-1.46-2/data/bristle3.RData: gzip compressed data, from Unix, original size modulo 2^32 14740 data/r-cran-qtl-1.46-2/data/badorder.RData: bzip2 compressed data, block size = 900k data/r-cran-qtl-1.46-2/data/listeria.RData: bzip2 compressed data, block size = 900k data/r-cran-qtl-1.46-2/data/multitrait.RData: XZ compressed data data/r-cran-qtl-1.46-2/data/map10.RData: bzip2 compressed data, block size = 900k data/r-cran-qtl-1.46-2/data/fake.4way.RData: XZ compressed data data/r-cran-qtl-1.46-2/data/fake.bc.RData: XZ compressed data data/r-cran-qtl-1.46-2/data/locations.RData: gzip compressed data, from Unix, original size modulo 2^32 1408 data/r-cran-qtl-1.46-2/data/mapthis.RData: bzip2 compressed data, block size = 900k data/r-cran-qtl-1.46-2/data/hyper.RData: XZ compressed data data/r-cran-qtl-1.46-2/man/scanonevar.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmprocesspermutation.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/comparecrosses.Rd: ASCII text data/r-cran-qtl-1.46-2/man/arithscanperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/pull.draws.Rd: ASCII text data/r-cran-qtl-1.46-2/man/scanonevar.meanperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/refineqtl.Rd: ASCII text data/r-cran-qtl-1.46-2/man/sim.geno.Rd: ASCII text data/r-cran-qtl-1.46-2/man/inferFounderHap.Rd: ASCII text data/r-cran-qtl-1.46-2/man/allchrsplits.Rd: ASCII text data/r-cran-qtl-1.46-2/man/fake.f2.Rd: ASCII text data/r-cran-qtl-1.46-2/man/inferredpartitions.Rd: ASCII text data/r-cran-qtl-1.46-2/man/formMarkerCovar.Rd: ASCII text data/r-cran-qtl-1.46-2/man/pull.markers.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.missing.Rd: ASCII text data/r-cran-qtl-1.46-2/man/totmar.Rd: ASCII text data/r-cran-qtl-1.46-2/man/subset.map.Rd: ASCII text data/r-cran-qtl-1.46-2/man/phenames.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmfind.marker.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/plot.geno.Rd: ASCII text data/r-cran-qtl-1.46-2/man/add.cim.covar.Rd: ASCII text data/r-cran-qtl-1.46-2/man/reduce2grid.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmplotheatmap.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/mqmscanall.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/scanoneboot.Rd: ASCII text data/r-cran-qtl-1.46-2/man/reorderqtl.Rd: ASCII text data/r-cran-qtl-1.46-2/man/subset.scantwo.Rd: ASCII text data/r-cran-qtl-1.46-2/man/effectplot.Rd: ASCII text data/r-cran-qtl-1.46-2/man/find.flanking.Rd: ASCII text data/r-cran-qtl-1.46-2/man/comparegeno.Rd: ASCII text data/r-cran-qtl-1.46-2/man/summary.scantwo.old.Rd: ASCII text data/r-cran-qtl-1.46-2/man/formLinkageGroups.Rd: ASCII text data/r-cran-qtl-1.46-2/man/max.scanone.Rd: ASCII text data/r-cran-qtl-1.46-2/man/pull.rf.Rd: ASCII text data/r-cran-qtl-1.46-2/man/fake.4way.Rd: ASCII text data/r-cran-qtl-1.46-2/man/max.scanPhyloQTL.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.scantwo.Rd: ASCII text data/r-cran-qtl-1.46-2/man/summary.scantwoperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/clean.scantwo.Rd: ASCII text data/r-cran-qtl-1.46-2/man/interpPositions.Rd: ASCII text data/r-cran-qtl-1.46-2/man/switch.order.Rd: ASCII text data/r-cran-qtl-1.46-2/man/replacemap.scanone.Rd: ASCII text data/r-cran-qtl-1.46-2/man/scantwopermhk.Rd: ASCII text data/r-cran-qtl-1.46-2/man/addtoqtl.Rd: ASCII text data/r-cran-qtl-1.46-2/man/badorder.Rd: ASCII text data/r-cran-qtl-1.46-2/man/summary.scantwo.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.pheno.Rd: ASCII text data/r-cran-qtl-1.46-2/man/geno.table.Rd: ASCII text data/r-cran-qtl-1.46-2/man/top.errorlod.Rd: ASCII text data/r-cran-qtl-1.46-2/man/pull.pheno.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plotLodProfile.Rd: ASCII text data/r-cran-qtl-1.46-2/man/convert2risib.Rd: ASCII text data/r-cran-qtl-1.46-2/man/listeria.Rd: ASCII text data/r-cran-qtl-1.46-2/man/qtlversion.Rd: ASCII text data/r-cran-qtl-1.46-2/man/cbind.scantwoperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/condense.scantwo.Rd: ASCII text data/r-cran-qtl-1.46-2/man/drop.markers.Rd: ASCII text data/r-cran-qtl-1.46-2/man/findDupMarkers.Rd: ASCII text data/r-cran-qtl-1.46-2/man/summary.fitqtl.Rd: ASCII text data/r-cran-qtl-1.46-2/man/fill.geno.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.scanoneboot.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmplotcistrans.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/plot.map.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmscan.Rd: ASCII text data/r-cran-qtl-1.46-2/man/convert.scantwo.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmplotmultitrait.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/mqmplotclusteredheatmap.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/strip.partials.Rd: ASCII text data/r-cran-qtl-1.46-2/man/flip.order.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmsetcofactors.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/effectscan.Rd: ASCII text data/r-cran-qtl-1.46-2/man/add.threshold.Rd: ASCII text data/r-cran-qtl-1.46-2/man/locations.Rd: ASCII text data/r-cran-qtl-1.46-2/man/xaxisloc.scanone.Rd: ASCII text data/r-cran-qtl-1.46-2/man/rescalemap.Rd: ASCII text data/r-cran-qtl-1.46-2/man/bristleX.Rd: ASCII text data/r-cran-qtl-1.46-2/man/countXO.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.errorlod.Rd: ASCII text data/r-cran-qtl-1.46-2/man/stepwiseqtl.Rd: LaTeX document, ASCII text data/r-cran-qtl-1.46-2/man/getid.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmplotdirectedqtl.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/shiftmap.Rd: ASCII text data/r-cran-qtl-1.46-2/man/find.pseudomarker.Rd: ASCII text data/r-cran-qtl-1.46-2/man/ripple.Rd: ASCII text data/r-cran-qtl-1.46-2/man/c.scantwoperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmtestnormal.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/orderMarkers.Rd: ASCII text data/r-cran-qtl-1.46-2/man/pull.map.Rd: ASCII text data/r-cran-qtl-1.46-2/man/nind.Rd: ASCII text data/r-cran-qtl-1.46-2/man/convert.map.Rd: ASCII text data/r-cran-qtl-1.46-2/man/subset.cross.Rd: ASCII text data/r-cran-qtl-1.46-2/man/find.markerpos.Rd: ASCII text data/r-cran-qtl-1.46-2/man/c.scanone.Rd: ASCII text data/r-cran-qtl-1.46-2/man/est.rf.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.scanoneperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.rf.Rd: ASCII text data/r-cran-qtl-1.46-2/man/subset.scanoneperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/scanone.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mapthis.Rd: ASCII text data/r-cran-qtl-1.46-2/man/qtl-internal.Rd: ASCII text data/r-cran-qtl-1.46-2/man/calc.errorlod.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmplotcofactors.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/summary.map.Rd: ASCII text data/r-cran-qtl-1.46-2/man/multitrait.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.pxg.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmscanfdr.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/nphe.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmplotcircle.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/addcovarint.Rd: LaTeX document, ASCII text data/r-cran-qtl-1.46-2/man/find.marker.Rd: ASCII text data/r-cran-qtl-1.46-2/man/geno.image.Rd: ASCII text data/r-cran-qtl-1.46-2/man/sim.map.Rd: ASCII text data/r-cran-qtl-1.46-2/man/fitqtl.Rd: ASCII text data/r-cran-qtl-1.46-2/man/bayesint.Rd: ASCII text data/r-cran-qtl-1.46-2/man/checkAlleles.Rd: ASCII text data/r-cran-qtl-1.46-2/man/dropfromqtl.Rd: ASCII text data/r-cran-qtl-1.46-2/man/sim.cross.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmpermutation.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/findmarkerindex.Rd: ASCII text data/r-cran-qtl-1.46-2/man/map2table.Rd: ASCII text data/r-cran-qtl-1.46-2/man/a.starting.point.Rd: LaTeX document, ASCII text data/r-cran-qtl-1.46-2/man/table2map.Rd: ASCII text data/r-cran-qtl-1.46-2/man/simPhyloQTL.Rd: ASCII text data/r-cran-qtl-1.46-2/man/fake.bc.Rd: ASCII text data/r-cran-qtl-1.46-2/man/makeqtl.Rd: ASCII text data/r-cran-qtl-1.46-2/man/c.scanoneperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/hyper.Rd: ASCII text data/r-cran-qtl-1.46-2/man/markernames.Rd: ASCII text data/r-cran-qtl-1.46-2/man/write.cross.Rd: ASCII text data/r-cran-qtl-1.46-2/man/transformPheno.Rd: ASCII text data/r-cran-qtl-1.46-2/man/drop.dupmarkers.Rd: ASCII text data/r-cran-qtl-1.46-2/man/drop.nullmarkers.Rd: ASCII text data/r-cran-qtl-1.46-2/man/addqtl.Rd: LaTeX document, ASCII text data/r-cran-qtl-1.46-2/man/movemarker.Rd: ASCII text data/r-cran-qtl-1.46-2/man/scanqtl.Rd: ASCII text data/r-cran-qtl-1.46-2/man/cleanGeno.Rd: ASCII text data/r-cran-qtl-1.46-2/man/nullmarkers.Rd: ASCII text data/r-cran-qtl-1.46-2/man/jittermap.Rd: ASCII text data/r-cran-qtl-1.46-2/man/scanonevar.varperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/cbind.scanoneperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/cim.Rd: ASCII text data/r-cran-qtl-1.46-2/man/convert2riself.Rd: ASCII text data/r-cran-qtl-1.46-2/man/geno.crosstab.Rd: ASCII text data/r-cran-qtl-1.46-2/man/max.scantwo.Rd: LaTeX document, ASCII text data/r-cran-qtl-1.46-2/man/readMWril.Rd: ASCII text data/r-cran-qtl-1.46-2/man/est.map.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmextractmarkers.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/mqmautocofactors.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/arithscan.Rd: ASCII text data/r-cran-qtl-1.46-2/man/pickMarkerSubset.Rd: ASCII text data/r-cran-qtl-1.46-2/man/clean.cross.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.qtl.Rd: ASCII text data/r-cran-qtl-1.46-2/man/summary.scanoneperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/addloctocross.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/simulateMissingData.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/mqmgetmodel.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/simFounderSnps.Rd: ASCII text data/r-cran-qtl-1.46-2/man/calc.penalties.Rd: ASCII text data/r-cran-qtl-1.46-2/man/summary.ripple.Rd: ASCII text data/r-cran-qtl-1.46-2/man/nmissing.Rd: ASCII text data/r-cran-qtl-1.46-2/man/scanPhyloQTL.Rd: ASCII text data/r-cran-qtl-1.46-2/man/read.cross.Rd: ASCII text data/r-cran-qtl-1.46-2/man/scantwo.Rd: ASCII text data/r-cran-qtl-1.46-2/man/argmax.geno.Rd: LaTeX document, ASCII text data/r-cran-qtl-1.46-2/man/typingGap.Rd: ASCII text data/r-cran-qtl-1.46-2/man/pull.argmaxgeno.Rd: ASCII text data/r-cran-qtl-1.46-2/man/markerlrt.Rd: ASCII text data/r-cran-qtl-1.46-2/man/chrnames.Rd: ASCII text data/r-cran-qtl-1.46-2/man/tryallpositions.Rd: ASCII text data/r-cran-qtl-1.46-2/man/droponemarker.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.cross.Rd: ASCII text data/r-cran-qtl-1.46-2/man/addpair.Rd: ASCII text 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data/r-cran-qtl-1.46-2/man/lodint.Rd: ASCII text data/r-cran-qtl-1.46-2/man/summary.scanPhyloQTL.Rd: ASCII text data/r-cran-qtl-1.46-2/man/addint.Rd: LaTeX document, ASCII text data/r-cran-qtl-1.46-2/man/plot.info.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.scanone.Rd: ASCII text data/r-cran-qtl-1.46-2/man/c.scantwo.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plot.scantwoperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/plotModel.Rd: ASCII text data/r-cran-qtl-1.46-2/man/summary.scanoneboot.Rd: ASCII text data/r-cran-qtl-1.46-2/man/replacemap.scantwo.Rd: ASCII text data/r-cran-qtl-1.46-2/man/summary.scanone.Rd: ASCII text data/r-cran-qtl-1.46-2/man/convert.scanone.Rd: ASCII text data/r-cran-qtl-1.46-2/man/subset.scantwoperm.Rd: ASCII text data/r-cran-qtl-1.46-2/man/mqmplotpermutations.Rd: TeX document, ASCII text data/r-cran-qtl-1.46-2/man/nchr.Rd: ASCII text data/r-cran-qtl-1.46-2/man/calc.genoprob.Rd: ASCII text data/r-cran-qtl-1.46-2/man/chrlen.Rd: ASCII text 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source, ASCII text data/r-cran-qtl-1.46-2/src/R_init.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/hmm_bci.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/scantwopermhk.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/hmm_4way.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/inferFounderHap.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/simulate.h: ASCII text data/r-cran-qtl-1.46-2/src/scanone_em.h: ASCII text data/r-cran-qtl-1.46-2/src/mqmprob.cpp: C++ source, ASCII text data/r-cran-qtl-1.46-2/src/scantwo_mr.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/mqmmixture.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/scanone_hk.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/simulate.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/stahl_mf.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/ril48_reorg.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/scanone_em_covar.h: ASCII text data/r-cran-qtl-1.46-2/src/scantwopermhk.h: C source, ASCII text 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C source, ASCII text data/r-cran-qtl-1.46-2/src/hmm_ri8selfIRIP1.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/effectscan.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/hmm_ri4sib.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/fitqtl_hk.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/scanone_mr.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/standalone.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/ripple.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/hmm_f2i.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/scantwo_hk.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/scantwo_hk.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/util.h: C source, ASCII text data/r-cran-qtl-1.46-2/src/scanone_hk_binary.h: ASCII text data/r-cran-qtl-1.46-2/src/zeroin.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/hmm_bci.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/hmm_ri4sib.c: C source, ASCII text data/r-cran-qtl-1.46-2/src/lapackutil.c: C source, ASCII text 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