data/r-bioc-scuttle-1.0.3+dfsg/DESCRIPTION:                              ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/NAMESPACE:                                ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/RcppExports.R:                          Pascal source, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/addPerCellQC.R:                         ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/aggregateAcrossCells.R:                 ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/aggregateAcrossFeatures.R:              ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/calculateAverage.R:                     ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/calculateCPM.R:                         ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/calculateFPKM.R:                        ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/calculateTPM.R:                         ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/downsampleBatches.R:                    ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/downsampleMatrix.R:                     ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/fitLinearModel.R:                       ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/geometricSizeFactors.R:                 ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/isOutlier.R:                            ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/librarySizeFactors.R:                   ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/logNormCounts.R:                        ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/makePerCellDF.R:                        ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/makePerFeatureDF.R:                     ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/medianSizeFactors.R:                    ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/mockSCE.R:                              ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/normalizeCounts.R:                      ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/numDetectedAcrossCells.R:               ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/numDetectedAcrossFeatures.R:            ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/perCellQCMetrics.R:                     ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/perFeatureQCMetrics.R:                  ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/quickPerCellQC.R:                       ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/readSparseCounts.R:                     ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/scuttle-pkg.R:                          ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/sumCountsAcrossCells.R:                 ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/sumCountsAcrossFeatures.R:              ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/summarizeAssayByGroup.R:                ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/uniquifyFeatureNames.R:                 ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/utils_other.R:                          ASCII text
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data/r-bioc-scuttle-1.0.3+dfsg/R/utils_subset.R:                         ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/R/whichNonZero.R:                         ASCII text
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data/r-bioc-scuttle-1.0.3+dfsg/inst/CITATION:                            ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/inst/NEWS.Rd:                             LaTeX document, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/inst/doc/overview.R:                      ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/inst/doc/overview.Rmd:                    ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/inst/include/scuttle/downsample_vector.h: C++ source, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/inst/include/scuttle/linear_model_fit.h:  C++ source, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/addPerCellQC.Rd:                      ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/aggregateAcrossCells.Rd:              ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/aggregateAcrossFeatures.Rd:           ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/calculateAverage.Rd:                  ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/calculateCPM.Rd:                      ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/calculateFPKM.Rd:                     ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/calculateTPM.Rd:                      ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/downsampleBatches.Rd:                 ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/downsampleMatrix.Rd:                  ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/fitLinearModel.Rd:                    ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/geometricSizeFactors.Rd:              ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/isOutlier.Rd:                         LaTeX document, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/librarySizeFactors.Rd:                ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/logNormCounts.Rd:                     ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/makePerCellDF.Rd:                     ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/makePerFeatureDF.Rd:                  ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/medianSizeFactors.Rd:                 LaTeX document, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/mockSCE.Rd:                           ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/normalizeCounts.Rd:                   ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/numDetectedAcrossCells.Rd:            ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/numDetectedAcrossFeatures.Rd:         ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/perCellQCMetrics.Rd:                  ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/perFeatureQCMetrics.Rd:               ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/quickPerCellQC.Rd:                    ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/readSparseCounts.Rd:                  ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/scuttle-pkg.Rd:                       ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/scuttle-utils.Rd:                     ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/sumCountsAcrossCells.Rd:              ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/sumCountsAcrossFeatures.Rd:           ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/summarizeAssayByGroup.Rd:             ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/uniquifyFeatureNames.Rd:              ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/man/whichNonZero.Rd:                      ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/src/Makevars:                             ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/src/RcppExports.cpp:                      C source, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/src/cumulative_prop.cpp:                  C++ source, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/src/downsample_counts.cpp:                C source, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/src/fit_linear_model.cpp:                 C source, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/src/sum_counts.cpp:                       C source, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/src/utils.cpp:                            C source, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/src/utils.h:                              C source, ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/tests/testthat/setup.R:                   ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/tests/testthat/test-calc-ave.R:           ASCII text
data/r-bioc-scuttle-1.0.3+dfsg/tests/testthat/test-calc-cpm.R:           ASCII text
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