data/r-bioc-rhtslib-1.22.0+dfsg/DESCRIPTION: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/NAMESPACE: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/NEWS: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/R/zzz.R: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/README.md: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/build/vignette.rds: gzip compressed data, from Unix, original size modulo 2^32 447 data/r-bioc-rhtslib-1.22.0+dfsg/inst/doc/Rhtslib.R: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/doc/Rhtslib.Rmd: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/README: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam_aux.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam_cat.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam_endian.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam_plbuf.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam_plbuf.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam_sort.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/sam.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/sam.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/sam_header.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/sam_opts.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/sam_opts.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/sam_utils.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/samtools.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/version.h: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/man/Rhtslib-package.Rd: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/man/pkgconfig.Rd: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/Makevars: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/Makevars.common: makefile script, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/Makevars.win: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/R_init_Rhtslib.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/.appveyor.yml: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/INSTALL: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/LICENSE: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/Makefile: makefile script, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/Makefile.Rhtslib: makefile script, UTF-8 Unicode text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/Makefile.Rhtslib.win: makefile script, UTF-8 Unicode text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/NEWS: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/README: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bcf_sr_sort.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bcf_sr_sort.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzip.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/config.h: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/config.h.in: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/config.mk.in: makefile script, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/configure: POSIX shell script, ASCII text executable data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/configure.ac: M4 macro processor script, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_codecs.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_codecs.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_decode.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_decode.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_encode.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_encode.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_external.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_index.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_index.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_samtools.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_samtools.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_stats.c: C source, ASCII text 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data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/rANS_byte.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/rANS_static.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/rANS_static.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/sam_header.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/sam_header.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/string_alloc.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/string_alloc.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/errmod.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/faidx.5: troff or preprocessor input, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/faidx.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/hfile.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/hfile_gcs.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/hfile_internal.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/hfile_libcurl.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/hfile_net.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/hfile_s3.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/hts.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/hts_internal.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/hts_os.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htsfile.1: troff or preprocessor input, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htsfile.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/bgzf.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/cram.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/faidx.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/hfile.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/hts.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/hts_defs.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/hts_endian.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/hts_log.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/hts_os.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/kbitset.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/kfunc.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/khash.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/khash_str2int.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/klist.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/knetfile.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/kseq.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/ksort.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/kstring.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/regidx.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/sam.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/synced_bcf_reader.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/tbx.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/thread_pool.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/vcf.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/vcf_sweep.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/vcfutils.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib.mk: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib.pc.in: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib_vars.mk: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/kfunc.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/knetfile.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/kstring.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/m4/hts_prog_cc_warnings.m4: M4 macro processor script, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/md5.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/multipart.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/os/lzma_stub.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/os/rand.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/plugin.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/probaln.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/realn.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/regidx.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/sam.5: troff or preprocessor input, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/sam.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/synced_bcf_reader.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/tabix.1: troff or preprocessor input, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/tabix.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/tbx.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/auxf#values.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/auxf#values_java.cram: CRAM version 3.0 (identified as auxf#values.bam) data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/auxf.fa: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/auxf.fa.fai: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/bgziptest.txt: ASCII text, with no line terminators data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/bgziptest.txt.gz: Blocked GNU Zip Format (BGZF; gzip compatible), block length 28 data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/bgziptest.txt.gz.gzi: Hitachi SH big-endian COFF object file, not stripped, 0 section, symbol offset=0x1d000000, optional header size 256 data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c1#bounds.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c1#clip.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c1#noseq.sam: Sequence Alignment/Map (SAM), ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c1#pad1.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c1#pad2.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c1#pad3.sam: Sequence Alignment/Map (SAM), ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c1#unknown.sam: Sequence Alignment/Map (SAM), ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c1.fa: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c1.fa.fai: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c2#pad.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c2.fa: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c2.fa.fai: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#1.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#2.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5b.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5b_java.cram: CRAM version 3.0 (identified as ce#5b.sam) data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#large_seq.sam: ASCII text, with very long lines data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#supp.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_depadded.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_padded.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap1.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap2.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce.fa: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce.fa.fai: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/compare_sam.pl: Perl script text executable data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/cross_validate.sh: POSIX shell script, ASCII text executable data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/faidx.fa: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/fieldarith.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/fieldarith.sam: Sequence Alignment/Map (SAM), ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/formatcols.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/formatmissing-out.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/formatmissing.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/hfile.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/hts_endian.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/md#1.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/md.fa: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/md.fa.fai: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/noroundtrip-out.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/noroundtrip.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/sam.c: C source, ASCII text, with very long lines data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/bed_file.Y.100200.out: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/bed_file.bed: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/gff_file.X.2934832.2935190.out: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/gff_file.gff: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/large_chr.20.1.2147483647.out: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/large_chr.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/tabix.tst: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/test-tabix.sh: POSIX shell script, ASCII text executable data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/vcf_file.1.3000151.out: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/vcf_file.2.3199812.out: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/tabix/vcf_file.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-bcf-sr.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-bcf-sr.pl: Perl script text executable data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-bcf-translate.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-bcf-translate.out: Variant Call Format (VCF) version 4.2, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-logging.pl: Perl script text executable data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-regidx.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-vcf-api.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-vcf-api.out: Variant Call Format (VCF) version 4.2, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-vcf-hdr-in.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-vcf-hdr.out: Variant Call Format (VCF) version 4.1, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-vcf-sweep.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-vcf-sweep.out: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test.pl: Perl script text executable data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test_bgzf.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test_view.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/thrash_threads1.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/thrash_threads2.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/thrash_threads3.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/thrash_threads4.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/thrash_threads5.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/thrash_threads6.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/thread_pool.md: ASCII text, with very long lines data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#blank.sam: empty data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#large_aux.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#large_aux2.sam: Sequence Alignment/Map (SAM), ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#large_aux_java.cram: CRAM version 3.0 (identified as xx#large_aux.sam) data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#minimal.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#pair.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#repeated.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#rg.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#tlen.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#tlen2.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#triplet.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#unsorted.sam: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx.fa: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx.fa.fai: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/textutils.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/textutils_internal.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/thread_pool.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/thread_pool_internal.h: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.5: troff or preprocessor input, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf_sweep.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcfutils.c: C source, ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/version.sh: POSIX shell script, ASCII text executable data/r-bioc-rhtslib-1.22.0+dfsg/vignettes/Rhtslib.Rmd: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/debian/changelog: UTF-8 Unicode text data/r-bioc-rhtslib-1.22.0+dfsg/debian/control: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/debian/copyright: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/r-bioc-rhtslib-1.22.0+dfsg/debian/salsa-ci.yml: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/debian/source/format: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/debian/tests/control_test_keps_on_failing: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/debian/tests/vignette: POSIX shell script, ASCII text executable data/r-bioc-rhtslib-1.22.0+dfsg/debian/upstream/metadata: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/debian/watch: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/.pc/.version: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/.pc/.quilt_patches: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/.pc/.quilt_series: ASCII text data/r-bioc-rhtslib-1.22.0+dfsg/.pc/applied-patches: empty