data/r-bioc-deseq2-1.30.0+dfsg/CODE_OF_CONDUCT.md: UTF-8 Unicode text data/r-bioc-deseq2-1.30.0+dfsg/DESCRIPTION: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/NAMESPACE: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/NEWS: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/AllClasses.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/AllGenerics.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/RcppExports.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/core.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/expanded.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/fitNbinomGLMs.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/helper.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/lfcShrink.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/methods.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/parallel.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/plots.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/results.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/rlog.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/vst.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/R/wrappers.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/build/vignette.rds: gzip compressed data, from Unix, original size modulo 2^32 449 data/r-bioc-deseq2-1.30.0+dfsg/inst/CITATION: CSV text data/r-bioc-deseq2-1.30.0+dfsg/inst/doc/DESeq2.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/inst/doc/DESeq2.Rmd: UTF-8 Unicode text data/r-bioc-deseq2-1.30.0+dfsg/inst/extdata/singleCellTab.csv: CSV text data/r-bioc-deseq2-1.30.0+dfsg/inst/script/icobra.png: PNG image data, 1500 x 1500, 8-bit/color RGB, non-interlaced data/r-bioc-deseq2-1.30.0+dfsg/inst/script/icobra_benchmarks.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/inst/script/icobra_pkg_versions.txt: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/inst/script/makeSim.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/inst/script/runScripts.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/inst/script/testsuite.Rmd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/inst/script/vst.nb: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/inst/script/vst.pdf: PDF document, version 1.4 data/r-bioc-deseq2-1.30.0+dfsg/man/DESeq.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/DESeq2-package.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/DESeqDataSet.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/DESeqResults.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/DESeqTransform.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/coef.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/collapseReplicates.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/counts.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/design.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/dispersionFunction.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/dispersions.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/estimateBetaPriorVar.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/estimateDispersions.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/estimateDispersionsGeneEst.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/estimateSizeFactors.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/estimateSizeFactorsForMatrix.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/fpkm.Rd: C source, ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/fpm.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/integrateWithSingleCell.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/lfcShrink.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/makeExampleDESeqDataSet.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/nbinomLRT.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/nbinomWaldTest.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/normTransform.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/normalizationFactors.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/normalizeGeneLength.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/plotCounts.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/plotDispEsts.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/plotMA.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/plotPCA.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/plotSparsity.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/priorInfo.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/replaceOutliers.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/results.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/rlog.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/show.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/sizeFactors.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/summary.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/unmix.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/varianceStabilizingTransformation.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/man/vst.Rd: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/src/DESeq2.cpp: C source, ASCII text, with very long lines data/r-bioc-deseq2-1.30.0+dfsg/src/Makevars: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/src/Makevars.win: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/src/RcppExports.cpp: C source, ASCII text, with very long lines data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_DESeq.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_QR.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_addMLE.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_betaFitting.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_collapse.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_construction_errors.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_edge_case.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_factors.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_fpkm.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_interactions.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_linear_mu.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_methods.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_model_matrix.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_nbinomWald.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_optim.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_outlier.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_plots.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_results.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_size_factor.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_unmix.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_weights.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_zero_zero.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_design_matrix.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_lfcShrink.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_parallel.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_txi.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_dispersions.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat/test_LRT.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/tests/testthat.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/vignettes/DESeq2.Rmd: UTF-8 Unicode text data/r-bioc-deseq2-1.30.0+dfsg/vignettes/library.bib: BibTeX text file, UTF-8 Unicode text data/r-bioc-deseq2-1.30.0+dfsg/debian/README.test: UTF-8 Unicode text data/r-bioc-deseq2-1.30.0+dfsg/debian/changelog: UTF-8 Unicode text data/r-bioc-deseq2-1.30.0+dfsg/debian/control: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/debian/copyright: UTF-8 Unicode text data/r-bioc-deseq2-1.30.0+dfsg/debian/docs: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/debian/examples: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/debian/patches/fix_autopkgtest.patch: unified diff output, UTF-8 Unicode text data/r-bioc-deseq2-1.30.0+dfsg/debian/patches/series: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/r-bioc-deseq2-1.30.0+dfsg/debian/salsa-ci.yml: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/debian/source/format: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/debian/tests/control: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/debian/tests/run-unit-test: POSIX shell script, ASCII text executable data/r-bioc-deseq2-1.30.0+dfsg/debian/upstream/metadata: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/debian/watch: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/.pc/.version: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/.pc/.quilt_patches: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/.pc/.quilt_series: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/.pc/applied-patches: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/.pc/fix_autopkgtest.patch/tests/testthat/test_design_matrix.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/.pc/fix_autopkgtest.patch/tests/testthat/test_lfcShrink.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/.pc/fix_autopkgtest.patch/tests/testthat/test_parallel.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/.pc/fix_autopkgtest.patch/tests/testthat/test_txi.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/.pc/fix_autopkgtest.patch/tests/testthat/test_dispersions.R: ASCII text data/r-bioc-deseq2-1.30.0+dfsg/.pc/fix_autopkgtest.patch/tests/testthat/test_LRT.R: ASCII text