data/pilercr-1.06+dfsg/acceptaa.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/accepthit.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/alignarrays.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/alignclust.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/alignprofs.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/aligntraps.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/alnarray.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/alngivenpath.cpp: C source, Non-ISO extended-ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/alpha.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/assert.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/bittb.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/clustcons.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/clustconsr.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/cmp.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/comp.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/cons.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/distcalc.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/distcalc.h: C++ source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/distfunc.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/distfunc.h: C++ source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/dp.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/estring.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/estring.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/expandpiles.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/filterb.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/filterb2.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/findarrays.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/findpiles.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/fixbounds.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/forkmer.h: ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/getarraydata.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/getccs.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/getconsaa.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/getgdtree.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/getparams.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/getsubseq.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/glbalign.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/hitstoimages.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/info.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/intlist.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/kmerdist.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/log.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/logaa.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/loghits.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/main.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/makecontigmap.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/makegraph.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/makeindex.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/mem.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/mergearrays.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/mergefilterhits.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/mk: Bourne-Again shell script, ASCII text executable data/pilercr-1.06+dfsg/mkrootmsa.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/msa.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/msa.h: C++ source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/multaln.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/multaln.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/myassert.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/options.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/outarray.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/outdetail.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/outdetailaa.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/outlocalaln.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/params.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/params.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/pilercr.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/pilercr.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/pilercr.vcxproj: XML 1.0 document, UTF-8 Unicode (with BOM) text, with CRLF line terminators data/pilercr-1.06+dfsg/proffrommsa.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/profile.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/progaln.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/progress.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/progress.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/pwpath.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/pwpath.h: C++ source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/quit.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/readfilterhits.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/readmfa.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/revcomp.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/savefhits.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/savefilterhit.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/saveseqs.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/savetraps.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/scoremx.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/seq.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/seq.h: C++ source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/seqvect.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/seqvect.h: C++ source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/sw.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/swsimple.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/tbsw.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/tree.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/tree.h: C++ source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/types.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/upgma.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/usage.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/utils.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/utils.h: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/utils_linux.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/utils_unix.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/utils_win32.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/validaa.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/writearrays.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/writegff.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/writepiles.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/debian/changelog: ASCII text data/pilercr-1.06+dfsg/debian/compat: ASCII text data/pilercr-1.06+dfsg/debian/control: ASCII text data/pilercr-1.06+dfsg/debian/copyright: ASCII text data/pilercr-1.06+dfsg/debian/patches/debugsymbols.patch: unified diff output, ASCII text data/pilercr-1.06+dfsg/debian/patches/fix_unix_builds.patch: unified diff output, ASCII text, with CRLF, LF line terminators data/pilercr-1.06+dfsg/debian/patches/no-static.patch: unified diff output, ASCII text data/pilercr-1.06+dfsg/debian/patches/series: ASCII text data/pilercr-1.06+dfsg/debian/pilercr.install: ASCII text data/pilercr-1.06+dfsg/debian/pilercr.manpages: ASCII text data/pilercr-1.06+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/pilercr-1.06+dfsg/debian/source/format: ASCII text data/pilercr-1.06+dfsg/debian/upstream/metadata: ASCII text data/pilercr-1.06+dfsg/debian/watch: ASCII text data/pilercr-1.06+dfsg/.pc/.version: ASCII text data/pilercr-1.06+dfsg/.pc/.quilt_patches: ASCII text data/pilercr-1.06+dfsg/.pc/.quilt_series: ASCII text data/pilercr-1.06+dfsg/.pc/applied-patches: ASCII text data/pilercr-1.06+dfsg/.pc/fix_unix_builds.patch/utils_other.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/.pc/no-static.patch/Makefile: makefile script, ASCII text data/pilercr-1.06+dfsg/.pc/debugsymbols.patch/Makefile: makefile script, ASCII text data/pilercr-1.06+dfsg/utils_other.cpp: C source, ASCII text, with CRLF line terminators data/pilercr-1.06+dfsg/Makefile: makefile script, ASCII text