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data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep1/lib_format_counts.json:             JSON data
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep1/logs/salmon_quant.log:              ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep1/quant.genes.sf:                     ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep1/quant.sf:                           ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/ambig_info.tsv:            ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/exp3_seq.gz:               gzip compressed data, original size modulo 2^32 5048
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/exp5_seq.gz:               gzip compressed data, original size modulo 2^32 5048
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/exp_gc.gz:                 gzip compressed data, original size modulo 2^32 644
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/expected_bias.gz:          gzip compressed data, original size modulo 2^32 32768
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/fld.gz:                    gzip compressed data, original size modulo 2^32 4004
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/meta_info.json:            JSON data
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/obs3_seq.gz:               gzip compressed data, original size modulo 2^32 5048
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/obs5_seq.gz:               gzip compressed data, original size modulo 2^32 5048
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/obs_gc.gz:                 gzip compressed data, original size modulo 2^32 644
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/observed_bias.gz:          gzip compressed data, original size modulo 2^32 16384
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/aux_info/observed_bias_3p.gz:       gzip compressed data, original size modulo 2^32 16384
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/cmd_info.json:                      JSON data
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/libParams/flenDist.txt:             ASCII text, with very long lines
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/lib_format_counts.json:             JSON data
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/logs/salmon_quant.log:              ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/quant.genes.sf:                     ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep2/quant.sf:                           ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/ambig_info.tsv:            ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/exp3_seq.gz:               gzip compressed data, original size modulo 2^32 5048
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/exp5_seq.gz:               gzip compressed data, original size modulo 2^32 5048
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/exp_gc.gz:                 gzip compressed data, original size modulo 2^32 644
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/expected_bias.gz:          gzip compressed data, original size modulo 2^32 32768
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/fld.gz:                    gzip compressed data, original size modulo 2^32 4004
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/meta_info.json:            JSON data
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/obs3_seq.gz:               gzip compressed data, original size modulo 2^32 5048
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/obs5_seq.gz:               gzip compressed data, original size modulo 2^32 5048
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/obs_gc.gz:                 gzip compressed data, original size modulo 2^32 644
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/observed_bias.gz:          gzip compressed data, original size modulo 2^32 16384
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/aux_info/observed_bias_3p.gz:       gzip compressed data, original size modulo 2^32 16384
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/cmd_info.json:                      JSON data
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/libParams/flenDist.txt:             ASCII text, with very long lines
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/lib_format_counts.json:             JSON data
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/logs/salmon_quant.log:              ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/quant.genes.sf:                     ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/UHR_Rep3/quant.sf:                           ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/salmon_output/counts_from_SALMON.tsv:                      ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep1.read1.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep1.read2.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep1_R1.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:53 2018, from Unix, original size modulo 2^32 147243
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep1_R2.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:53 2018, from Unix, original size modulo 2^32 146769
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep2.read1.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep2.read2.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep2_R1.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:34 2018, from Unix, original size modulo 2^32 198627
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep2_R2.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:34 2018, from Unix, original size modulo 2^32 198461
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep3.read1.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep3.read2.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep3_R1.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:34 2018, from Unix, original size modulo 2^32 165268
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/HBR_Rep3_R2.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:34 2018, from Unix, original size modulo 2^32 164268
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep1.read1.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep1.read2.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep1_R1.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:34 2018, from Unix, original size modulo 2^32 291958
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep1_R2.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:34 2018, from Unix, original size modulo 2^32 289538
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep2.read1.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep2.read2.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep2_R1.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:34 2018, from Unix, original size modulo 2^32 293977
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep2_R2.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:34 2018, from Unix, original size modulo 2^32 290523
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep3.read1.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep3.read2.fastq.gz_trimming_report.txt: ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep3_R1.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:34 2018, from Unix, original size modulo 2^32 231306
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/preprocessed/trimmed_reads/UHR_Rep3_R2.fastq.gz:                        gzip compressed data, last modified: Fri Jan 12 13:52:34 2018, from Unix, original size modulo 2^32 228916
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/HBR_Rep1.read1.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 148509
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/HBR_Rep1.read2.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 148509
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/HBR_Rep2.read1.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 200559
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/HBR_Rep2.read2.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 200559
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/HBR_Rep3.read1.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 166702
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/HBR_Rep3.read2.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 166702
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/UHR_Rep1.read1.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 294584
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/UHR_Rep1.read2.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 294584
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/UHR_Rep2.read1.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 296543
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/UHR_Rep2.read2.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 296543
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/UHR_Rep3.read1.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 233452
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/reads/UHR_Rep3.read2.fastq.gz:                                          gzip compressed data, from Unix, original size modulo 2^32 233452
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/sample.cdna.fasta:                                                      ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/sample.fasta:                                                           ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/sample_data/sample.gtf:                                                             ASCII text, with very long lines
data/pigx-rnaseq-0.0.10+ds/tests/sample_sheet.csv:                                                                   CSV text
data/pigx-rnaseq-0.0.10+ds/tests/settings_no_de.yaml:                                                                ASCII text
data/pigx-rnaseq-0.0.10+ds/tests/test_deseq_reports/test.sh.in:                                                      POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/tests/test_fastqc/test.sh.in:                                                             POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/tests/test_genome_coverage/test.sh.in:                                                    POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/tests/test_multiqc/test.sh.in:                                                            POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/tests/test_salmon/test_salmon_quant.sh.in:                                                POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/tests/test_salmon/test_salmon_index.sh.in:                                                POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/tests/test_salmon_counts/test.sh.in:                                                      POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/tests/test_star/test.sh.in:                                                               POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/tests/test_star_counts/test.sh.in:                                                        POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/tests/test_trim_galore/input_files/sample.read1.fastq.gz:                                 gzip compressed data, was "sample.read1.fastq", last modified: Thu Jan 11 17:05:29 2018, from Unix, original size modulo 2^32 12262
data/pigx-rnaseq-0.0.10+ds/tests/test_trim_galore/input_files/sample.read2.fastq.gz:                                 gzip compressed data, was "sample.read2.fastq", last modified: Thu Jan 11 17:05:37 2018, from Unix, original size modulo 2^32 12262
data/pigx-rnaseq-0.0.10+ds/tests/test_trim_galore/test.sh.in:                                                        POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/tests/settings.yaml:                                                                      ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/changelog:                                                                         ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/control:                                                                           ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/copyright:                                                                         ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/manpages:                                                                          ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/patches/latencyWait.patch:                                                         unified diff output, ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/patches/notSelfContained.patch:                                                    unified diff output, ASCII text, with very long lines
data/pigx-rnaseq-0.0.10+ds/debian/patches/series:                                                                    ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/pigx-rnaseq.1:                                                                     troff or preprocessor input, ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/pigx-rnaseq.docs:                                                                  ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/rules:                                                                             a /usr/bin/make -f script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/debian/salsa-ci.yml:                                                                      ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/source/format:                                                                     ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/upstream/metadata:                                                                 ASCII text
data/pigx-rnaseq-0.0.10+ds/debian/watch:                                                                             ASCII text
data/pigx-rnaseq-0.0.10+ds/.pc/.version:                                                                             ASCII text
data/pigx-rnaseq-0.0.10+ds/.pc/.quilt_patches:                                                                       ASCII text
data/pigx-rnaseq-0.0.10+ds/.pc/.quilt_series:                                                                        ASCII text
data/pigx-rnaseq-0.0.10+ds/.pc/applied-patches:                                                                      ASCII text
data/pigx-rnaseq-0.0.10+ds/.pc/latencyWait.patch/test.sh.in:                                                         ASCII text
data/pigx-rnaseq-0.0.10+ds/.pc/latencyWait.patch/etc/settings.yaml.in:                                               ASCII text
data/pigx-rnaseq-0.0.10+ds/.pc/latencyWait.patch/tests/settings.yaml:                                                ASCII text
data/pigx-rnaseq-0.0.10+ds/.pc/latencyWait.patch/tests/test_salmon/test_salmon_index.sh.in:                          POSIX shell script, ASCII text executable
data/pigx-rnaseq-0.0.10+ds/.pc/latencyWait.patch/pigx_rnaseq.py:                                                     Python script, UTF-8 Unicode text executable, with very long lines
data/pigx-rnaseq-0.0.10+ds/.pc/notSelfContained.patch/pigx_rnaseq.py:                                                Python script, UTF-8 Unicode text executable, with very long lines
data/pigx-rnaseq-0.0.10+ds/.pc/notSelfContained.patch/scripts/runDeseqReport.R:                                      UTF-8 Unicode text
data/pigx-rnaseq-0.0.10+ds/test.sh.in:                                                                               ASCII text
data/pigx-rnaseq-0.0.10+ds/pigx_rnaseq.py:                                                                           Python script, UTF-8 Unicode text executable, with very long lines