data/perm-0.4.0/AlignmentsQ.cpp:                              C source, ASCII text
data/perm-0.4.0/ChrIndex2GeneName.cpp:                        C source, ASCII text
data/perm-0.4.0/ChromosomeInBits.cpp:                         C source, ASCII text
data/perm-0.4.0/ColorSpaceRead.cpp:                           C source, ASCII text
data/perm-0.4.0/FileInputBuffer.cpp:                          C source, ASCII text
data/perm-0.4.0/FileOutputBuffer.cpp:                         C source, ASCII text
data/perm-0.4.0/Filename.cpp:                                 C source, ASCII text
data/perm-0.4.0/Flags.cpp:                                    C++ source, ASCII text
data/perm-0.4.0/GenomeInBits.cpp:                             C source, ASCII text
data/perm-0.4.0/GenomeNTdata.cpp:                             C source, ASCII text
data/perm-0.4.0/Genome_Index.cpp:                             C source, ASCII text
data/perm-0.4.0/Genome_Index_Table.cpp:                       C source, ASCII text
data/perm-0.4.0/Genome_Index_TableQ.cpp:                      C source, ASCII text
data/perm-0.4.0/HashIndexT.cpp:                               C source, ASCII text
data/perm-0.4.0/Index_Table.cpp:                              C source, ASCII text
data/perm-0.4.0/LongReadsSet.cpp:                             C source, ASCII text
data/perm-0.4.0/MappingResult.cpp:                            C source, ASCII text
data/perm-0.4.0/MismatchScores.cpp:                           C source, ASCII text
data/perm-0.4.0/PairedReadsMapping.cpp:                       C source, ASCII text
data/perm-0.4.0/PairedReadsSet.cpp:                           C source, ASCII text
data/perm-0.4.0/ParseReadsOpts.cpp:                           C source, ASCII text
data/perm-0.4.0/PerM.cpp:                                     C++ source, ASCII text
data/perm-0.4.0/PerMTest.cpp:                                 C source, ASCII text
data/perm-0.4.0/ReSeq_bits.cpp:                               empty
data/perm-0.4.0/ReadInBits.cpp:                               C source, ASCII text
data/perm-0.4.0/ReadInBitsSet.cpp:                            C source, ASCII text
data/perm-0.4.0/ReadsFileParser.cpp:                          C source, ASCII text
data/perm-0.4.0/ReadsMapping.cpp:                             C source, ASCII text
data/perm-0.4.0/ReadsMappingFlags.cpp:                        C source, ASCII text
data/perm-0.4.0/ReadsMappingStats.cpp:                        C source, ASCII text
data/perm-0.4.0/ReadsQualScores.cpp:                          C source, ASCII text
data/perm-0.4.0/SeedPattern.cpp:                              C source, ASCII text
data/perm-0.4.0/ShortReadUtil.cpp:                            C source, ASCII text
data/perm-0.4.0/TestChromosomeNTdata.cpp:                     C source, ASCII text, with CRLF line terminators
data/perm-0.4.0/TestGenome_Index_TableQ.cpp:                  C source, ASCII text
data/perm-0.4.0/bitsOperationUtil.cpp:                        C source, ASCII text
data/perm-0.4.0/boolFlagArray.cpp:                            C source, ASCII text
data/perm-0.4.0/chdir.cpp:                                    C source, ASCII text
data/perm-0.4.0/chromosomeNTdata.cpp:                         C source, ASCII text
data/perm-0.4.0/minQ.cpp:                                     C source, ASCII text, with CRLF line terminators
data/perm-0.4.0/refInBinFile.cpp:                             C source, ASCII text
data/perm-0.4.0/stdafx.cpp:                                   ASCII text
data/perm-0.4.0/AlignmentsQ.h:                                C++ source, ASCII text
data/perm-0.4.0/ChrIndex2GeneName.h:                          C++ source, ASCII text
data/perm-0.4.0/ColorSpaceRead.h:                             C source, ASCII text
data/perm-0.4.0/FileInputBuffer.h:                            C++ source, ASCII text
data/perm-0.4.0/FileOutputBuffer.h:                           C++ source, ASCII text
data/perm-0.4.0/Filename.h:                                   C++ source, ASCII text
data/perm-0.4.0/Flags.h:                                      C++ source, ASCII text
data/perm-0.4.0/GenomeInBits.h:                               C++ source, ASCII text
data/perm-0.4.0/GenomeNTdata.h:                               C++ source, ASCII text
data/perm-0.4.0/Genome_Index.h:                               C++ source, ASCII text
data/perm-0.4.0/Genome_Index_Table.h:                         C++ source, ASCII text
data/perm-0.4.0/Genome_Index_TableQ.h:                        C++ source, ASCII text
data/perm-0.4.0/HashIndexT.h:                                 C++ source, ASCII text
data/perm-0.4.0/Index_Table.h:                                C++ source, ASCII text
data/perm-0.4.0/LongReadsSet.h:                               C++ source, ASCII text, with CRLF line terminators
data/perm-0.4.0/MismatchScores.h:                             C++ source, ASCII text
data/perm-0.4.0/PairedReadsMapping.h:                         C++ source, ASCII text
data/perm-0.4.0/PairedReadsSet.h:                             C++ source, ASCII text
data/perm-0.4.0/ParameterList.h:                              C++ source, ASCII text
data/perm-0.4.0/ParseReadsOpts.h:                             C++ source, ASCII text
data/perm-0.4.0/ReadInBits.h:                                 C++ source, ASCII text
data/perm-0.4.0/ReadInBitsSet.h:                              C++ source, ASCII text
data/perm-0.4.0/ReadsFileParser.h:                            C++ source, ASCII text
data/perm-0.4.0/ReadsMapping.h:                               C++ source, ASCII text
data/perm-0.4.0/ReadsMappingFlags.h:                          C++ source, ASCII text
data/perm-0.4.0/ReadsMappingStats.h:                          C++ source, ASCII text
data/perm-0.4.0/ReadsQualScores.h:                            C++ source, ASCII text
data/perm-0.4.0/SeedPattern.h:                                C source, ASCII text
data/perm-0.4.0/ShortReadUtil.h:                              C++ source, ASCII text
data/perm-0.4.0/TestChromosomeNTdata.h:                       C++ source, ASCII text, with CRLF line terminators
data/perm-0.4.0/TestGenome_Index_TableQ.h:                    C++ source, ASCII text
data/perm-0.4.0/bitsOperationUtil.h:                          C source, ASCII text
data/perm-0.4.0/boolFlagArray.h:                              C++ source, ASCII text
data/perm-0.4.0/chdir.h:                                      C source, ASCII text
data/perm-0.4.0/chromosomeInBits.h:                           C++ source, ASCII text
data/perm-0.4.0/chromosomeNTdata.h:                           C++ source, ASCII text
data/perm-0.4.0/minQ.h:                                       C++ source, ASCII text, with CRLF line terminators
data/perm-0.4.0/refInBinFile.h:                               C source, ASCII text
data/perm-0.4.0/refInBinary.h:                                empty
data/perm-0.4.0/resource.h:                                   C source, ISO-8859 text
data/perm-0.4.0/seedOptions.h:                                C++ source, ASCII text
data/perm-0.4.0/stdafx.h:                                     C++ source, ASCII text
data/perm-0.4.0/debian/README.source:                         ASCII text
data/perm-0.4.0/debian/changelog:                             ASCII text
data/perm-0.4.0/debian/control:                               ASCII text
data/perm-0.4.0/debian/copyright:                             ASCII text
data/perm-0.4.0/debian/install:                               ASCII text
data/perm-0.4.0/debian/links:                                 ASCII text
data/perm-0.4.0/debian/manpages:                              ASCII text
data/perm-0.4.0/debian/patches/gcc7.patch:                    unified diff output, ASCII text
data/perm-0.4.0/debian/patches/hardening.patch:               unified diff output, ASCII text
data/perm-0.4.0/debian/patches/make_dynamic_executable.patch: unified diff output, ASCII text
data/perm-0.4.0/debian/patches/series:                        ASCII text
data/perm-0.4.0/debian/patches/spelling.patch:                unified diff output, ASCII text
data/perm-0.4.0/debian/perm.1:                                troff or preprocessor input, ASCII text, with very long lines
data/perm-0.4.0/debian/perm.1.ronn:                           ASCII text, with very long lines
data/perm-0.4.0/debian/rules:                                 a /usr/bin/make -f script, ASCII text executable
data/perm-0.4.0/debian/salsa-ci.yml:                          ASCII text
data/perm-0.4.0/debian/source/format:                         ASCII text
data/perm-0.4.0/debian/upstream/metadata:                     ASCII text
data/perm-0.4.0/debian/watch:                                 ASCII text
data/perm-0.4.0/.pc/.version:                                 ASCII text
data/perm-0.4.0/.pc/.quilt_patches:                           ASCII text
data/perm-0.4.0/.pc/.quilt_series:                            ASCII text
data/perm-0.4.0/.pc/applied-patches:                          ASCII text
data/perm-0.4.0/.pc/make_dynamic_executable.patch/makefile:   makefile script, ASCII text
data/perm-0.4.0/.pc/hardening.patch/makefile:                 makefile script, ASCII text
data/perm-0.4.0/.pc/spelling.patch/ParameterList.cpp:         C++ source, ASCII text
data/perm-0.4.0/.pc/gcc7.patch/MappingResult.h:               C++ source, ASCII text
data/perm-0.4.0/makefile:                                     makefile script, ASCII text
data/perm-0.4.0/ParameterList.cpp:                            C++ source, ASCII text
data/perm-0.4.0/MappingResult.h:                              C++ source, ASCII text