data/parsnp-1.5.3+dfsg/.gitignore:                                                      ASCII text
data/parsnp-1.5.3+dfsg/.travis.yml:                                                     ASCII text
data/parsnp-1.5.3+dfsg/CITATION:                                                        ASCII text
data/parsnp-1.5.3+dfsg/LICENSE:                                                         UTF-8 Unicode text
data/parsnp-1.5.3+dfsg/README.md:                                                       ASCII text
data/parsnp-1.5.3+dfsg/autogen.sh:                                                      ASCII text
data/parsnp-1.5.3+dfsg/configure:                                                       POSIX shell script, ASCII text executable
data/parsnp-1.5.3+dfsg/configure.ac:                                                    ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_12_2013.fna:                 ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_15_2013.fna:                 ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_16_2013.fna:                 ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_17_2013.fna:                 ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_18_2013.fna:                 ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_19_2013.fna:                 ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_1_2013.fna:                  ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_21_2013.fna:                 ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_25_2013.fna:                 ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_2_2013.fna:                  ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_3_2013.fna:                  ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Al-Hasa_4_2013.fna:                  ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Bisha_1_2012.fna:                    ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Buraidah_1_2013.fna:                 ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/EMC_2012.fna:                        ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/England-Qatar_2012.fna:              ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/England1.fna:                        ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/FRA-UAE.fna:                         ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna:            ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna:            ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna:            ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna: ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Jeddah_1_2013.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Jordan-N3_2012.fna:                  ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/KF192507.1.fna:                      ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/KFU-HKU_1.fna:                       ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/KFU-HKU_13.fna:                      ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/KFU-HKU_19Dam.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/KJ477102.1.fna:                      ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/KSA-CAMEL-363.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/KSA-CAMEL-376.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/KSA-CAMEL-378.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/KSA-CAMEL-503.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/KSA-CAMEL-505.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/NC_019843.2.fna:                     ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Qatar3.fna:                          ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Qatar4.fna:                          ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Riyadh_14_2013.fna:                  ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Riyadh_1_2012.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Riyadh_2_2012.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Riyadh_3_2013.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Riyadh_4_2013.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Riyadh_5_2013.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Riyadh_9_2013.fna:                   ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Taif_1_2013.fna:                     ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/genomes/Wadi-Ad-Dawasir_1_2013.fna:          ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/ref/England1.fna:                            ASCII text
data/parsnp-1.5.3+dfsg/examples/mers_virus/ref/England1.gbk:                            ASCII text
data/parsnp-1.5.3+dfsg/script/shuffle.py:                                               Python script, ASCII text executable
data/parsnp-1.5.3+dfsg/src/Converter.cpp:                                               C++ source, ASCII text
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data/parsnp-1.5.3+dfsg/src/LCB.cpp:                                                     C source, ASCII text
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data/parsnp-1.5.3+dfsg/src/LCR.cpp:                                                     C source, ASCII text, with CRLF line terminators
data/parsnp-1.5.3+dfsg/src/LCR.hh:                                                      C++ source, ASCII text, with CRLF line terminators
data/parsnp-1.5.3+dfsg/src/MuscleInterface.cpp:                                         C++ source, ASCII text
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data/parsnp-1.5.3+dfsg/src/TMum.cpp:                                                    C source, ASCII text, with CRLF line terminators
data/parsnp-1.5.3+dfsg/src/TMum.hh:                                                     C++ source, ASCII text, with CRLF line terminators
data/parsnp-1.5.3+dfsg/src/csgmum/README:                                               ASCII text, with no line terminators
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data/parsnp-1.5.3+dfsg/src/csgmum/fastaread.c:                                          C source, ASCII text, with CRLF line terminators
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data/parsnp-1.5.3+dfsg/src/csgmum/mum.c:                                                C source, ASCII text, with CRLF line terminators
data/parsnp-1.5.3+dfsg/src/csgmum/mum.h:                                                C source, ASCII text, with CRLF line terminators
data/parsnp-1.5.3+dfsg/src/csgmum/types.h:                                              C source, ASCII text, with CRLF line terminators
data/parsnp-1.5.3+dfsg/src/ext/README:                                                  ASCII text
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data/parsnp-1.5.3+dfsg/src/ext/iniFile.h:                                               C++ source, ASCII text, with CRLF line terminators
data/parsnp-1.5.3+dfsg/src/parsnp.cpp:                                                  C source, ASCII text, with very long lines
data/parsnp-1.5.3+dfsg/src/parsnp.hh:                                                   C++ source, ASCII text
data/parsnp-1.5.3+dfsg/src/Makefile.am:                                                 ASCII text
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data/parsnp-1.5.3+dfsg/debian/NEWS:                                                     ASCII text
data/parsnp-1.5.3+dfsg/debian/README.test:                                              UTF-8 Unicode text
data/parsnp-1.5.3+dfsg/debian/changelog:                                                ASCII text
data/parsnp-1.5.3+dfsg/debian/control:                                                  ASCII text
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data/parsnp-1.5.3+dfsg/debian/parsnp.1:                                                 troff or preprocessor input, ASCII text
data/parsnp-1.5.3+dfsg/debian/patches/add_missing_interpreter_line.patch:               unified diff output, ASCII text
data/parsnp-1.5.3+dfsg/debian/patches/avoid_rpath.patch:                                unified diff output, ASCII text
data/parsnp-1.5.3+dfsg/debian/patches/drop_m64.patch:                                   unified diff output, ASCII text
data/parsnp-1.5.3+dfsg/debian/patches/fix_build_with_as-needed.patch:                   unified diff output, ASCII text
data/parsnp-1.5.3+dfsg/debian/patches/non-versioned-libs.patch:                         unified diff output, ASCII text
data/parsnp-1.5.3+dfsg/debian/patches/proper_calls_to_tools.patch:                      unified diff output, ASCII text
data/parsnp-1.5.3+dfsg/debian/patches/series:                                           ASCII text
data/parsnp-1.5.3+dfsg/debian/rules:                                                    a /usr/bin/make -f script, ASCII text executable
data/parsnp-1.5.3+dfsg/debian/salsa-ci.yml:                                             ASCII text
data/parsnp-1.5.3+dfsg/debian/source/format:                                            ASCII text
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data/parsnp-1.5.3+dfsg/debian/tests/run-unit-test:                                      Bourne-Again shell script, ASCII text executable
data/parsnp-1.5.3+dfsg/debian/upstream/metadata:                                        ASCII text
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data/parsnp-1.5.3+dfsg/.pc/add_missing_interpreter_line.patch/parsnp:                   Python script, ASCII text executable
data/parsnp-1.5.3+dfsg/.pc/proper_calls_to_tools.patch/parsnp:                          Python script, ASCII text executable
data/parsnp-1.5.3+dfsg/.pc/drop_m64.patch/Makefile.am:                                  automake makefile script, ASCII text
data/parsnp-1.5.3+dfsg/.pc/drop_m64.patch/src/Makefile.am:                              ASCII text
data/parsnp-1.5.3+dfsg/.pc/fix_build_with_as-needed.patch/src/Makefile.am:              ASCII text
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data/parsnp-1.5.3+dfsg/parsnp:                                                          Python script, ASCII text executable
data/parsnp-1.5.3+dfsg/Makefile.am:                                                     automake makefile script, ASCII text