data/paml-4.9j+dfsg/3s.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/4s.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/5s.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/6s.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/GeneticCode.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/MCaa.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/MCbase.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/MCbaseRandomTree.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/MCcodon.dat: Biosig/EDF: European Data format data/paml-4.9j+dfsg/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/Technical/Pt/testPMat.c: C source, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/Technical/Simulation/Codon/MCcodonNSbranches.dat: Biosig/EDF: European Data format data/paml-4.9j+dfsg/Technical/Simulation/Codon/MCcodonNSbranchsites.dat: Biosig/EDF: European Data format data/paml-4.9j+dfsg/Technical/Simulation/Codon/MCcodonNSclade.dat: Biosig/EDF: European Data format data/paml-4.9j+dfsg/Technical/Simulation/Codon/MCcodonNSsites.dat: Biosig/EDF: European Data format data/paml-4.9j+dfsg/Technical/Simulation/Codon/PositiveSites.c: C source, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/Technical/Simulation/Codon/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/Technical/Simulation/Codon/codeml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/Technical/Simulation/multiruns.c: C source, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/Technical/Simulation/multiruns.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/aaml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/baseml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/bin/logoMCMCtree_MAC.jpg: JPEG image data, Exif standard: [TIFF image data, big-endian, direntries=7, orientation=upper-left, xresolution=98, yresolution=106, resolutionunit=2, software=Adobe Photoshop CS6 (Macintosh), datetime=2018:08:16 13:15:48], progressive, precision 8, 1951x1950, components 3 data/paml-4.9j+dfsg/brown.nuc: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/brown.rooted.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/brown.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/codeml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/codonml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/MtZoa.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/cpREV10.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/cpREV64.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/dayhoff-dcmut.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/dayhoff.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/g1974a.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/g1974c.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/g1974p.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/g1974v.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/grantham.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/jones-dcmut.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/jones.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/lg.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/miyata.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/mtArt.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/mtREV24.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/mtmam.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/dat/wag.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/doc/pamlHistory.txt: ISO-8859 text, with CRLF line terminators data/paml-4.9j+dfsg/examples/9s.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/CladeModelCD/ECP_EDN_15.nuc: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/CladeModelCD/codeml.CladeC.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/CladeModelCD/codeml.CladeD.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/CladeModelCD/tree.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/DatingSoftBound/BF.Clock23.xlsx: Microsoft Excel 2007+ data/paml-4.9j+dfsg/examples/DatingSoftBound/FixedDsClock23.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/DatingSoftBound/README.BayesFactor.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/DatingSoftBound/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/DatingSoftBound/bf1/mcmctree.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/DatingSoftBound/bf2/mcmctree.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/DatingSoftBound/mcmctree.Infinitesites.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/DatingSoftBound/mcmctree.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/DatingSoftBound/mtCDNApri.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/DatingSoftBound/mtCDNApri123.txt: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/HIVNSsites/HIVenvSweden.trees: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/HIVNSsites/HIVenvSweden.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/HIVNSsites/HIVenvSweden4s.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/HIVNSsites/HIVenvSweden4s.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/HIVNSsites/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/HIVNSsites/codeml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MHC.Swanson2002MBE/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MHC.Swanson2002MBE/bigmhc.phy: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MHC.Swanson2002MBE/bigmhc.trees: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/MHC.Swanson2002MBE/codeml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/MouseLemurs.aa: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/MouseLemurs.nuc: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/MouseLemurs.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/MouseLemurs123.nuc: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/README2.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/aaml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/aaml2.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/baseml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/baseml2.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/codeml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/codonml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/codonml2.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/MouseLemurs/mtmam.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.Beast.Nulldata.xml: XML 1.0 document, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.Beast.xml: XML 1.0 document, ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.NodeNumbers.tre: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.nexus: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.tre: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.txt: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/baseml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/commands.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/in.BV.HKYG5: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/mcmctreeClock1.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/mcmctreeClock2.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.FluH1/mcmctreeClock3.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.HIV2/FigTree.tre: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.HIV2/HIV2ge.tre: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.HIV2/HIV2ge.txt: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.HIV2/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.HIV2/baseml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.HIV2/in.BV.HKYG5: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.HIV2/mcmctree.ExactlnL.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/TipDate.HIV2/mcmctree.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/YN00abglobin.result: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/abglobin.aa: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/abglobin.nuc: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/abglobin.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/dNdSGene1.nuc: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/horai.nuc: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/horai.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysin/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysin/RasMol.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysin/SiteNumbering.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysin/codeml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysin/codemlYangSwanson2002.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysin/lysin.nuc: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysin/lysin.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysin/lysinYangSwanson2002.nuc: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysozyme/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysozyme/codeml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysozyme/lysozymeLarge.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysozyme/lysozymeLarge.nuc: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysozyme/lysozymeLarge.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysozyme/lysozymeSmall.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysozyme/lysozymeSmall.nuc: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysozyme/lysozymeSmall.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/lysozyme/lysozymeSmall.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNA/AAcodon.result.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNA/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNA/codeml.AAcodon.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNA/codeml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNA/miyata.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNA/mtCDNAmam.nuc: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNA/mtCDNAmam.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNA/mtCDNApri.aa: ASCII text, with very long lines, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNA/mtCDNApri.nuc: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNA/mtCDNApri.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNAape/2s.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNAape/OmegaAA.dat: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNAape/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNAape/codeml.HC.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNAape/codeml.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNAape/mtCDNA.HC.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNAape/mtCDNAape.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtCDNAape/mtCDNAape.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/examples/mtprim9.nuc: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/mcmctree.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/pamp.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/paupblock: uuencoded or xxencoded, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/paupend: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/paupstart: uuencoded or xxencoded, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/src/BFdriver.c: C source, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/src/Makefile.MSC: makefile script, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/src/README.txt: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/src/TreeTimeJeff.c: C source, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/src/baseml.c: C source, ASCII text data/paml-4.9j+dfsg/src/basemlg.c: C source, ASCII text data/paml-4.9j+dfsg/src/chi2.c: C source, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/src/codeml.c: C source, ASCII text data/paml-4.9j+dfsg/src/ds.c: C source, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/src/evolver.c: C source, ASCII text data/paml-4.9j+dfsg/src/mcmctree.c: C source, ASCII text data/paml-4.9j+dfsg/src/pamp.c: C source, ASCII text data/paml-4.9j+dfsg/src/tools.c: C source, Non-ISO extended-ASCII text data/paml-4.9j+dfsg/src/treespace.c: C source, ASCII text data/paml-4.9j+dfsg/src/treesub.c: C source, ASCII text data/paml-4.9j+dfsg/src/yn00.c: C source, ASCII text data/paml-4.9j+dfsg/src/paml.h: C source, ASCII text data/paml-4.9j+dfsg/src/Makefile: makefile script, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/stewart.aa: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/stewart.trees: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/yn00.ctl: ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/debian/README.source: ASCII text data/paml-4.9j+dfsg/debian/README.test: UTF-8 Unicode text data/paml-4.9j+dfsg/debian/bin/baseml: POSIX shell script, ASCII text executable data/paml-4.9j+dfsg/debian/changelog: ASCII text data/paml-4.9j+dfsg/debian/control: ASCII text data/paml-4.9j+dfsg/debian/copyright: ASCII text data/paml-4.9j+dfsg/debian/paml-doc.README.Debian: ASCII text data/paml-4.9j+dfsg/debian/paml-doc.docs: ASCII text data/paml-4.9j+dfsg/debian/paml-doc.examples: ASCII text data/paml-4.9j+dfsg/debian/paml.README.Debian: ASCII text data/paml-4.9j+dfsg/debian/paml.docs: ASCII text data/paml-4.9j+dfsg/debian/paml.install: ASCII text data/paml-4.9j+dfsg/debian/paml.links: ASCII text data/paml-4.9j+dfsg/debian/patches/add_clean_target.patch: unified diff output, ASCII text, with CRLF, LF line terminators data/paml-4.9j+dfsg/debian/patches/gcc10.patch: unified diff output, UTF-8 Unicode text data/paml-4.9j+dfsg/debian/patches/hardening.patch: unified diff output, ASCII text, with CRLF, LF line terminators data/paml-4.9j+dfsg/debian/patches/series: ASCII text data/paml-4.9j+dfsg/debian/profile.d/paml: ASCII text data/paml-4.9j+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/paml-4.9j+dfsg/debian/salsa-ci.yml: ASCII text data/paml-4.9j+dfsg/debian/source/format: ASCII text data/paml-4.9j+dfsg/debian/tests/control: ASCII text data/paml-4.9j+dfsg/debian/tests/run-unit-test: Bourne-Again shell script, ASCII text executable data/paml-4.9j+dfsg/debian/upstream/metadata: ASCII text data/paml-4.9j+dfsg/debian/watch: ASCII text data/paml-4.9j+dfsg/.pc/.version: ASCII text data/paml-4.9j+dfsg/.pc/.quilt_patches: ASCII text data/paml-4.9j+dfsg/.pc/.quilt_series: ASCII text data/paml-4.9j+dfsg/.pc/applied-patches: ASCII text data/paml-4.9j+dfsg/.pc/gcc10.patch/src/paml.h: C source, ASCII text data/paml-4.9j+dfsg/.pc/hardening.patch/src/Makefile: makefile script, ASCII text, with CRLF line terminators data/paml-4.9j+dfsg/.pc/add_clean_target.patch/src/Makefile: makefile script, ASCII text, with CRLF line terminators