data/muscle-3.8.1551/aligngivenpath.cpp: C source, Non-ISO extended-ASCII text, with CRLF line terminators data/muscle-3.8.1551/aligngivenpathsw.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/aligntwomsas.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/aligntwoprofs.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/aln.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/alpha.cpp: C source, ASCII text data/muscle-3.8.1551/anchors.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/bittraceback.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/blosum62.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/blosumla.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/clust.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/cluster.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/clwwt.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/color.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/cons.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/diaglist.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/diffobjscore.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/diffpaths.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/difftrees.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/difftreese.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/distcalc.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/distfunc.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/distpwkimura.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/domuscle.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/dosp.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/dpreglist.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/drawtree.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/edgelist.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/enumopts.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/enumtostr.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/estring.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/fasta2.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/fasta.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/fastclust.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/fastdist.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/fastdistjones.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/fastdistkbit.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/fastdistkmer.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/fastdistmafft.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/fastdistnuc.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/fastscorepath2.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/finddiags.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/finddiagsn.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/glbalign352.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/glbalign.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/glbaligndiag.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/glbalignle.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/glbalignsimple.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/glbalignsp.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/glbalignspn.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/glbalignss.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/glbalndimer.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/globals.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/globalslinux.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/globalswin32.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/gonnet.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/henikoffweight.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/henikoffweightpb.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/html.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/hydro.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/intmath.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/local.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/main.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/makerootmsab.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/makerootmsa.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/maketree.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/mhack.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/mpam200.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/msa2.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/msa.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/msadistkimura.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/msf.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/muscle.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/muscleout.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/nucmx.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/nwdasimple2.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/nwdasimple.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/nwdasmall.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/nwrec.cpp: ASCII text, with CRLF line terminators data/muscle-3.8.1551/nwsmall.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/objscore2.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/objscore.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/objscoreda.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/onexception.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/options.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/outweights.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/pam200mafft.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/params.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/phy2.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/phy3.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/phy4.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/phy.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/phyfromclust.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/phyfromfile.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/physeq.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/phytofile.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/posgap.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/ppscore.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/profdb.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/profile.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/profilefrommsa.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/progalign.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/progress.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/progressivealign.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/pwpath.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/readmx.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/realigndiffs.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/realigndiffse.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/refine.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/refinehoriz.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/refinesubfams.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/refinetree.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/refinetreee.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/refinevert.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/refinew.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/savebest.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/scoredist.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/scoregaps.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/scorehistory.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/scorepp.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/seq.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/seqvect.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/setblosumweights.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/setgscweights.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/setnewhandler.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/spfast.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/sptest.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/stabilize.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/subfam.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/subfams.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/sw.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/termgaps.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/textfile.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/threewaywt.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/tomhydro.cpp: C source, ASCII text, with CRLF, LF line terminators data/muscle-3.8.1551/traceback.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/tracebackopt.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/tracebacksw.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/treefrommsa.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/typetostr.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/upgma2.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/usage.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/validateids.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/vtml2.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/writescorefile.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/alpha.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/cluster.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/clust.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/clustsetdf.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/clustset.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/clustsetmsa.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/diaglist.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/distcalc.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/distfunc.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/dpregionlist.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/dpreglist.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/edgelist.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/enumopts.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/enums.h: ASCII text, with CRLF line terminators data/muscle-3.8.1551/estring.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/gapscoredimer.h: ASCII text, with CRLF line terminators data/muscle-3.8.1551/gonnet.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/intmath.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/msadist.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/msadistkimura.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/msadistmafft.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/msa.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/muscle.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/objscore.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/params.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/profile.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/pwpath.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/scorehistory.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/seq.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/seqvect.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/svnversion.h: ASCII text data/muscle-3.8.1551/textfile.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/timing.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/tree.h: C++ source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/types.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/unixio.h: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/debian/changelog: UTF-8 Unicode text data/muscle-3.8.1551/debian/compat: ASCII text data/muscle-3.8.1551/debian/control: ASCII text data/muscle-3.8.1551/debian/copyright: UTF-8 Unicode text data/muscle-3.8.1551/debian/dirs: ASCII text data/muscle-3.8.1551/debian/example.fa: ASCII text data/muscle-3.8.1551/debian/muscle.1: troff or preprocessor input, ASCII text, with very long lines data/muscle-3.8.1551/debian/muscle.1.xml: XML 1.0 document, UTF-8 Unicode text data/muscle-3.8.1551/debian/muscle.doc-base: UTF-8 Unicode text data/muscle-3.8.1551/debian/muscle.docs: ASCII text data/muscle-3.8.1551/debian/muscle.examples: ASCII text data/muscle-3.8.1551/debian/muscle.html: HTML document, Non-ISO extended-ASCII text, with very long lines, with CRLF line terminators data/muscle-3.8.1551/debian/muscle.install: ASCII text data/muscle-3.8.1551/debian/muscle.manpages: ASCII text data/muscle-3.8.1551/debian/patches/01_Fix_FTBFS_Hurd.patch: unified diff output, UTF-8 Unicode text, with CRLF, LF line terminators data/muscle-3.8.1551/debian/patches/makefile.patch: unified diff output, ASCII text data/muscle-3.8.1551/debian/patches/series: ASCII text data/muscle-3.8.1551/debian/rules: a /usr/bin/make -f script, ASCII text executable data/muscle-3.8.1551/debian/source/format: ASCII text data/muscle-3.8.1551/debian/tests/control: ASCII text data/muscle-3.8.1551/debian/tests/run-unit-test: Bourne-Again shell script, ASCII text executable data/muscle-3.8.1551/debian/upstream/edam: ASCII text data/muscle-3.8.1551/debian/upstream/metadata: ASCII text data/muscle-3.8.1551/debian/watch: ASCII text data/muscle-3.8.1551/.pc/.version: ASCII text data/muscle-3.8.1551/.pc/.quilt_patches: ASCII text data/muscle-3.8.1551/.pc/.quilt_series: ASCII text data/muscle-3.8.1551/.pc/applied-patches: ASCII text data/muscle-3.8.1551/.pc/01_Fix_FTBFS_Hurd.patch/globalsosx.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/.pc/01_Fix_FTBFS_Hurd.patch/globalsother.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/.pc/makefile.patch/Makefile: makefile script, ASCII text data/muscle-3.8.1551/globalsosx.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/globalsother.cpp: C source, ASCII text, with CRLF line terminators data/muscle-3.8.1551/Makefile: makefile script, ASCII text