data/minia-3.2.1+git20200522.4960a99/.gitignore: ASCII text data/minia-3.2.1+git20200522.4960a99/.gitmodules: ASCII text data/minia-3.2.1+git20200522.4960a99/INSTALL: ASCII text data/minia-3.2.1+git20200522.4960a99/LICENSE: ASCII text data/minia-3.2.1+git20200522.4960a99/README.md: exported SGML document, ASCII text, with very long lines data/minia-3.2.1+git20200522.4960a99/doc/CMakeLists.txt: ASCII text data/minia-3.2.1+git20200522.4960a99/doc/manual.pdf: PDF document, version 1.5 data/minia-3.2.1+git20200522.4960a99/doc/manual.tex: LaTeX 2e document, ASCII text, with very long lines data/minia-3.2.1+git20200522.4960a99/doc/paper.pdf: PDF document, version 1.4 data/minia-3.2.1+git20200522.4960a99/merci/merci.cpp: C++ source, ASCII text data/minia-3.2.1+git20200522.4960a99/merci/run-test-loop.sh: ASCII text data/minia-3.2.1+git20200522.4960a99/merci/run-test-simple.sh: ASCII text data/minia-3.2.1+git20200522.4960a99/merci/test-loop/assembly.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/merci/test-loop/reads.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/merci/test-simple/assembly.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/merci/test-simple/reads.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/scripts/filter_by_previous_contigs.cpp: C++ source, ASCII text data/minia-3.2.1+git20200522.4960a99/scripts/jenkins/README: ASCII text data/minia-3.2.1+git20200522.4960a99/scripts/jenkins/tool-minia-build-debian7-64bits-gcc-4.7.sh: Bourne-Again shell script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/scripts/jenkins/tool-minia-build-macos-10.9.5-gcc-4.2.1.sh: Bourne-Again shell script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/scripts/jenkins/tool-minia-release-debian.sh: Bourne-Again shell script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/scripts/convertToGFA.py: Python script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/scripts/debug_1seq_tip_removal.py: ASCII text data/minia-3.2.1+git20200522.4960a99/scripts/duplicate_sequences_according_abundance.py: ASCII text data/minia-3.2.1+git20200522.4960a99/scripts/ilots_stats.py: Python script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/scripts/max_mem_usage_from_log.py: Python script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/scripts/strip_bcalm_links.py: ASCII text data/minia-3.2.1+git20200522.4960a99/src/GraphSimplificationAttempts.cpp: ASCII text data/minia-3.2.1+git20200522.4960a99/src/Minia.cpp: C++ source, ASCII text data/minia-3.2.1+git20200522.4960a99/src/Minia.hpp: C++ source, ASCII text data/minia-3.2.1+git20200522.4960a99/src/build_info.hpp.in: ASCII text data/minia-3.2.1+git20200522.4960a99/src/main.cpp: C++ source, ASCII text data/minia-3.2.1+git20200522.4960a99/test/1seq.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/test/1seq_90bp.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/test/1seq_90bp.reads.fq: ASCII text data/minia-3.2.1+git20200522.4960a99/test/1seq_90bp_circ.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/test/1seq_90bp_simulate_reads.sh: ASCII text data/minia-3.2.1+git20200522.4960a99/test/ERR039477.md5: ASCII text data/minia-3.2.1+git20200522.4960a99/test/ERR039477.md5-gcc47: ASCII text data/minia-3.2.1+git20200522.4960a99/test/README: ASCII text data/minia-3.2.1+git20200522.4960a99/test/X.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/test/X.solution.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/test/bubble.fa: ASCII text, with very long lines data/minia-3.2.1+git20200522.4960a99/test/bubble.solution.fa: ASCII text, with very long lines data/minia-3.2.1+git20200522.4960a99/test/bubble_covmult0.5.fa: ASCII text, with very long lines data/minia-3.2.1+git20200522.4960a99/test/buchnera.fasta: ASCII text data/minia-3.2.1+git20200522.4960a99/test/buchnera_simulate_reads.sh: ASCII text data/minia-3.2.1+git20200522.4960a99/test/ec.fa: ASCII text, with very long lines data/minia-3.2.1+git20200522.4960a99/test/ec.solution.fa: ASCII text, with very long lines data/minia-3.2.1+git20200522.4960a99/test/genome10K.fasta: ASCII text, with very long lines data/minia-3.2.1+git20200522.4960a99/test/high_abundance.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/test/read50x_ref10K_e001.fa: ASCII text data/minia-3.2.1+git20200522.4960a99/test/tip.fa: ASCII text, with very long lines data/minia-3.2.1+git20200522.4960a99/test/tip.solution.fa: ASCII text, with very long lines data/minia-3.2.1+git20200522.4960a99/test/10k_test.sh: Bourne-Again shell script, UTF-8 Unicode text executable data/minia-3.2.1+git20200522.4960a99/test/test_ERR039477.sh: Bourne-Again shell script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/test/buchnera_test.sh: ASCII text data/minia-3.2.1+git20200522.4960a99/test/compare_fasta.py: Python script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/test/simple_test.sh: Bourne-Again shell script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/thirdparty/contig2fastg/contigs_to_fastg.cpp: C++ source, ASCII text data/minia-3.2.1+git20200522.4960a99/thirdparty/contig2fastg/kseq.h: C source, ASCII text data/minia-3.2.1+git20200522.4960a99/thirdparty/contig2fastg/makefile: makefile script, ASCII text data/minia-3.2.1+git20200522.4960a99/debian/README.debian: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/README.test: UTF-8 Unicode text data/minia-3.2.1+git20200522.4960a99/debian/changelog: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/control: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/copyright: UTF-8 Unicode text data/minia-3.2.1+git20200522.4960a99/debian/createmanpages: POSIX shell script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/debian/docs: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/install: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/manpages: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/merci.1: troff or preprocessor input, ASCII text data/minia-3.2.1+git20200522.4960a99/debian/minia.1: troff or preprocessor input, ASCII text data/minia-3.2.1+git20200522.4960a99/debian/patches/2to3.patch: unified diff output, ASCII text data/minia-3.2.1+git20200522.4960a99/debian/patches/fix_path_in_tests.patch: unified diff output, UTF-8 Unicode text data/minia-3.2.1+git20200522.4960a99/debian/patches/link_libraries.patch: unified diff output, ASCII text data/minia-3.2.1+git20200522.4960a99/debian/patches/no_install_to_wrong_dir.patch: unified diff output, ASCII text data/minia-3.2.1+git20200522.4960a99/debian/patches/series: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/patches/skip-rpath.patch: unified diff output, ASCII text data/minia-3.2.1+git20200522.4960a99/debian/patches/use_debian_packaged_gatb-core.patch: unified diff output, ASCII text data/minia-3.2.1+git20200522.4960a99/debian/rules: a /usr/bin/make -f script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/debian/salsa-ci.yml: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/source/format: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/tests/control: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/tests/run-unit-test: POSIX shell script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/debian/upstream/metadata: ASCII text data/minia-3.2.1+git20200522.4960a99/debian/watch: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/.version: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/.quilt_patches: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/.quilt_series: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/applied-patches: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/use_debian_packaged_gatb-core.patch/CMakeLists.txt: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/link_libraries.patch/CMakeLists.txt: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/no_install_to_wrong_dir.patch/CMakeLists.txt: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/skip-rpath.patch/CMakeLists.txt: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/fix_path_in_tests.patch/test/simple_test.sh: Bourne-Again shell script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/.pc/fix_path_in_tests.patch/test/10k_test.sh: Bourne-Again shell script, UTF-8 Unicode text executable data/minia-3.2.1+git20200522.4960a99/.pc/fix_path_in_tests.patch/test/test_ERR039477.sh: Bourne-Again shell script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/.pc/fix_path_in_tests.patch/test/buchnera_test.sh: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/2to3.patch/scripts/convertToGFA.py: Python script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/.pc/2to3.patch/scripts/debug_1seq_tip_removal.py: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/2to3.patch/scripts/duplicate_sequences_according_abundance.py: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/2to3.patch/scripts/ilots_stats.py: Python script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/.pc/2to3.patch/scripts/max_mem_usage_from_log.py: Python script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/.pc/2to3.patch/scripts/strip_bcalm_links.py: ASCII text data/minia-3.2.1+git20200522.4960a99/.pc/2to3.patch/test/compare_fasta.py: Python script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/.pc/2to3.patch/test/simple_test.sh: Bourne-Again shell script, ASCII text executable data/minia-3.2.1+git20200522.4960a99/CMakeLists.txt: ASCII text