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data/melting-5.2.0/doc/html/img130.png: PNG image data, 75 x 32, 4-bit colormap, interlaced data/melting-5.2.0/doc/Gui: cannot open `data/melting-5.2.0/doc/Gui' (No such file or directory) Development.tex: cannot open `Development.tex' (No such file or directory) data/melting-5.2.0/doc/DeveloppersGuide.pdf: PDF document, version 1.4 data/melting-5.2.0/doc/melting.bib: ASCII text data/melting-5.2.0/doc/DeveloppersGuide.html: HTML document, ASCII text data/melting-5.2.0/src/meltinggui/MeltingCalculator.java: Perl5 module source, ASCII text data/melting-5.2.0/src/meltinggui/ArgsMessage.java: Perl5 module source, ASCII text data/melting-5.2.0/src/meltinggui/MeltingObservable.java: Perl5 module source, ASCII text data/melting-5.2.0/src/meltinggui/dialogs/SequenceDialog.java: Java source, ASCII text data/melting-5.2.0/src/meltinggui/dialogs/DialogInterface.java: ASCII text data/melting-5.2.0/src/meltinggui/dialogs/HybridizationDialog.java: Java source, ASCII text 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Java source, ASCII text data/melting-5.2.0/src/melting/correctionMethods/EntropyCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/BatchMain.java: Perl5 module source, ASCII text data/melting-5.2.0/src/melting/CompatibleMain.java: Perl5 module source, ASCII text data/melting-5.2.0/src/melting/Helper.java: Perl5 module source, ASCII text data/melting-5.2.0/src/melting/patternModels/cricksPair/Santalucia04.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/cricksPair/Sugimoto96.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/cricksPair/Sugimoto95.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/cricksPair/Tanaka04.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/cricksPair/Xia98.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/cricksPair/Turner06.java: Java source, ASCII text 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ASCII text data/melting-5.2.0/src/melting/patternModels/wobble/InosineNNMethod.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/wobble/Znosko07Inosine.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/tandemMismatches/AllawiSantaluciaPeyret97_98_99tanmm.java: ASCII text, with CRLF line terminators data/melting-5.2.0/src/melting/patternModels/tandemMismatches/Turner99_06tanmm.java: ASCII text, with CRLF line terminators data/melting-5.2.0/src/melting/patternModels/singleDanglingEnds/Serra06_08SingleDanglingEnd.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleDanglingEnds/SingleDanglingEndMethod.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleDanglingEnds/Bommarito00SingleDanglingEnd.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/secondDanglingEnds/Serra05DoubleDanglingEnd.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/secondDanglingEnds/Serra06DoubleDanglingEnd.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/secondDanglingEnds/SecondDanglingEndMethod.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleBulge/Turner99_06SingleBulgeLoop.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleBulge/Serra07SingleBulgeLoop.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleBulge/Santalucia04SingleBulgeLoop.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleBulge/GlobalSingleBulgeLoopMethod.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleBulge/Tanaka04SingleBulgeLoop.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleMismatch/AllawiSantaluciaPeyret97_98_99mm.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleMismatch/Znosko08mm.java: ASCII text, with CRLF line terminators data/melting-5.2.0/src/melting/patternModels/singleMismatch/ZnoskoMethod.java: Java source, ASCII text, with very long lines data/melting-5.2.0/src/melting/patternModels/singleMismatch/Turner06mm.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleMismatch/Watkins11mm.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/singleMismatch/Znosko07mm.java: ASCII text, with CRLF line terminators data/melting-5.2.0/src/melting/patternModels/longBulge/Turner99_06LongBulgeLoop.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/longBulge/Santalucia04LongBulgeLoop.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/specificAcids/Owczarzy11TandemLockedAcid.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/specificAcids/Sugimoto01Hydroxyadenine.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/specificAcids/LockedAcidNNMethod.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/specificAcids/McTigue04LockedAcid.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/specificAcids/Owczarzy11SingleMismatchLockedAcid.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/specificAcids/Owczarzy11LockedAcid.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/specificAcids/Asanuma05Azobenzene.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/cngPatterns/Broda05CNGRepeats.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/InternalLoops/Turner06InternalLoop.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/InternalLoops/Znosko071x2Loop.java: Java source, ASCII text data/melting-5.2.0/src/melting/patternModels/InternalLoops/Santalucia04InternalLoop.java: Java source, ASCII 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data/melting-5.2.0/src/melting/exceptions/OptionSyntaxError.java: ASCII text data/melting-5.2.0/src/melting/exceptions/SequenceException.java: ASCII text data/melting-5.2.0/src/melting/exceptions/MethodNotApplicableException.java: ASCII text data/melting-5.2.0/src/melting/exceptions/ThermodynamicParameterError.java: ASCII text data/melting-5.2.0/src/melting/exceptions/FileException.java: ASCII text data/melting-5.2.0/src/melting/exceptions/NoExistingOutputFileException.java: ASCII text data/melting-5.2.0/src/melting/configuration/MethodText.java: ASCII text data/melting-5.2.0/src/melting/configuration/OptionManagement.java: Java source, UTF-8 Unicode text data/melting-5.2.0/src/melting/configuration/RegisterMethods.java: Java source, ASCII text data/melting-5.2.0/src/melting/FileReader.java: Perl5 module source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/magnesiumCorrections/Owczarzy08MagnesiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/magnesiumCorrections/Tan07MagnesiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/magnesiumCorrections/Tan06MagnesiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumEquivalence/SodiumEquivalent.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumEquivalence/Peyret00_NaEquivalent.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumEquivalence/Ahsen01_NaEquivalent.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumEquivalence/Mitsuhashi96NaEquivalent.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/mixedNaMgCorrections/Owczarzy08MixedNaMgCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/mixedNaMgCorrections/Tan07MixedNaMgCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/Tan06SodiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/Owczarzy04SodiumCorrection22.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/MarmurSchildkrautDoty98_62SodiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/Owczarzy04SodiumCorrection20.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/Santalucia96SodiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/FrankKamenetskii71SodiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/Ahsen01SodiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/SchildkrautLifson65SodiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/Tan07SodiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/Owczarzy04SodiumCorrection19.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/Santalucia98_04SodiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/Owczarzy04SodiumCorrection21.java: Java source, ASCII text data/melting-5.2.0/src/melting/ionCorrection/sodiumCorrections/Wetmur91SodiumCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/Main.java: Perl5 module source, ASCII text data/melting-5.2.0/src/melting/otherCorrections/formamideCorrections/FormamideLinearMethod.java: Java source, ASCII text data/melting-5.2.0/src/melting/otherCorrections/formamideCorrections/Blake96FormamideCorrection.java: Java source, UTF-8 Unicode text data/melting-5.2.0/src/melting/otherCorrections/dmsoCorrections/Ahsen01DMSOCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/otherCorrections/dmsoCorrections/Cullen76DMSOCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/otherCorrections/dmsoCorrections/Escara80DMSOCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/otherCorrections/dmsoCorrections/Musielski81DMSOCorrection.java: Java source, ASCII text data/melting-5.2.0/src/melting/help.txt: ASCII text, with very long lines data/melting-5.2.0/src/melting/MeltingFormatter.java: Perl5 module source, ASCII text data/melting-5.2.0/src/melting/Thermodynamics.java: Perl5 module source, ASCII text data/melting-5.2.0/src/melting/methodInterfaces/NamedMethod.java: ASCII text data/melting-5.2.0/src/melting/methodInterfaces/SodiumEquivalentMethod.java: Java source, ASCII text data/melting-5.2.0/src/melting/methodInterfaces/CorrectionMethod.java: Java source, ASCII text data/melting-5.2.0/src/melting/methodInterfaces/PatternComputationMethod.java: Java source, ASCII text data/melting-5.2.0/src/melting/methodInterfaces/MeltingComputationMethod.java: Java source, ASCII text data/melting-5.2.0/src/melting/approximativeMethods/MarmurSchildkrautDoty.java: Java source, UTF-8 Unicode text data/melting-5.2.0/src/melting/approximativeMethods/Ahsen01.java: Java source, ASCII text data/melting-5.2.0/src/melting/approximativeMethods/ApproximativeMode.java: Java source, ASCII text data/melting-5.2.0/src/melting/approximativeMethods/WetmurDNARNA91.java: Java source, ASCII text data/melting-5.2.0/src/melting/approximativeMethods/Owen69.java: Java source, UTF-8 Unicode text data/melting-5.2.0/src/melting/approximativeMethods/MarmurChester62_93_corr.java: ASCII text data/melting-5.2.0/src/melting/approximativeMethods/Santalucia98.java: Java source, ASCII text data/melting-5.2.0/src/melting/approximativeMethods/MarmurChester62_93.java: Java source, ASCII text data/melting-5.2.0/src/melting/approximativeMethods/WetmurRNA91.java: Java source, ASCII text data/melting-5.2.0/src/melting/approximativeMethods/Wetmur91.java: Java source, ASCII text data/melting-5.2.0/src/melting/approximativeMethods/WetmurDNA91.java: Java source, ASCII text data/melting-5.2.0/src/melting/ThermoResult.java: Perl5 module source, ASCII text data/melting-5.2.0/src/melting/handlers/EnergyHandler.java: Java source, ASCII text data/melting-5.2.0/src/melting/handlers/DataHandler.java: Java source, ASCII text data/melting-5.2.0/src/melting/handlers/ThermoHandler.java: Java source, ASCII text data/melting-5.2.0/src/melting/handlers/NodeHandler.java: Java source, ASCII text data/melting-5.2.0/src/examples/MainTestHydroxyadenine.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestPerfectMatching.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestDNAMagnesiumCorrections.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestSingleMismatchLockedAcidNucleic.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestSingleDanglingEnd.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestInternalLoop.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestAzobenzene.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestLongDanglingEnd.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestDNASodiumCorrections.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestTandemMismatches.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestInosineBasePairs.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestSingleMismatches.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTest.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestMeltingCPerfectMatching.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestInosineMelting4_3.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestApproximativeMode.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestNaEqMethods.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestApproximativeModeMeltingC.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestTandemLockedAcidNucleic.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/test/DNASingleMismatchesSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/RNAInternalLoopSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/DNARNADuplexes.txt: ASCII text data/melting-5.2.0/src/examples/test/DNASingleDanglingEndSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/hydroxyadenineSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/RNASelfComplementary.txt: ASCII text data/melting-5.2.0/src/examples/test/DNASodiumTestValues.txt: ASCII text data/melting-5.2.0/src/examples/test/DNARNASingleMismatchesSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/RNATandemMismatchesSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/RNASecondDanglingEndSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/DNALongDanglingEndSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/DNASingleBulgeLoopSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/RNASingleDanglingEndSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/RNALongDanglingEndSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/RNASingleMismatchesSequences1.txt: ASCII text data/melting-5.2.0/src/examples/test/RNAGUSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/DNAMagnesiumTestValues.txt: ASCII text data/melting-5.2.0/src/examples/test/CNGSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/lockedAcidNucleicSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/RNASingleBulgeLoopSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/2OMethylRNADuplexes.txt: ASCII text data/melting-5.2.0/src/examples/test/DNAInosineSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/DNATandemMismatchesSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/singleMismatchLockedAcidNucleicSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/DNASelfComplementary.txt: ASCII text data/melting-5.2.0/src/examples/test/RNANoSelfComplementary.txt: ASCII text data/melting-5.2.0/src/examples/test/RNAInosineSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/RNASingleMismatchesSequences2.txt: ASCII text data/melting-5.2.0/src/examples/test/tandemLockedAcidNucleicSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/azobenzeneSequences.txt: ASCII text data/melting-5.2.0/src/examples/test/DNANoSelfComplementary.txt: ASCII text data/melting-5.2.0/src/examples/MainTestSingleBulgeLoops.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestMeltingC4_3PerfectMatching.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestSecondDanglingEnd.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestDNAMismatchesMeltingC.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestDNADanglingEndMeltingC.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestLockedAcidNucleic.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestGUBasePairs.java: Perl5 module source, ASCII text data/melting-5.2.0/src/examples/MainTestCNGSequences.java: Perl5 module source, ASCII text data/melting-5.2.0/testResults/GUBasePairsData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/lockedNucleiAcidData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/azobenzeneDatas.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/secondDanglingEndData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/PerfectMatchingSequencesData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/internalLoopData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/tandemLockedNucleiAcidData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/SingleMismatcheData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/longDanglingEndData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/DNAMagnesiumCorrectionData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/singleBulgeLoopData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/tandemMismatchesData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/DNASodiumCorrectionData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/inosineData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/singleMismatchLockedNucleiAcidData: cannot open `data/melting-5.2.0/testResults/singleMismatchLockedNucleiAcidData' (No such file or directory) .ods: cannot open `.ods' (No such file or directory) data/melting-5.2.0/testResults/SingleDanglingEndData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/RNACNGRepeatsData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/hydroxyadenineData.ods: OpenDocument Spreadsheet data/melting-5.2.0/testResults/DNANaEqData.ods: OpenDocument Spreadsheet data/melting-5.2.0/debian/README.Debian: UTF-8 Unicode text data/melting-5.2.0/debian/bin/melting: POSIX shell script, ASCII text executable data/melting-5.2.0/debian/changelog: UTF-8 Unicode text data/melting-5.2.0/debian/compat: ASCII text data/melting-5.2.0/debian/control: ASCII text data/melting-5.2.0/debian/copyright: UTF-8 Unicode text data/melting-5.2.0/debian/melting.doc-base: UTF-8 Unicode text data/melting-5.2.0/debian/melting.docs: ASCII text data/melting-5.2.0/debian/melting.install: ASCII text data/melting-5.2.0/debian/melting.jlibs: ASCII text data/melting-5.2.0/debian/melting.manpages: ASCII text data/melting-5.2.0/debian/rules: a /usr/bin/make -f script, ASCII text executable data/melting-5.2.0/debian/source/format: ASCII text data/melting-5.2.0/debian/upstream/metadata: UTF-8 Unicode text data/melting-5.2.0/debian/watch: ASCII text data/melting-5.2.0/.pc/.version: ASCII text data/melting-5.2.0/.pc/.quilt_patches: ASCII text data/melting-5.2.0/.pc/.quilt_series: ASCII text data/melting-5.2.0/.pc/applied-patches: empty