data/libpal-java-1.5.1+dfsg/src/newmake.bat: DOS batch file, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/makejar-signed.bat: DOS batch file, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/makeclean.bat: DOS batch file, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/CircularGraphics.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/Painter.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/PositionedNode.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/TreePainterCircular.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/TreePainterNormal.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/LayoutTracker.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/NameColouriser.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/LinkageDisequilibriumComponent.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/LabelDisplayer.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/TreeComponent.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/gui/TreePainter.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/algorithmics/Assessor.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/algorithmics/GeneralObjectState.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/algorithmics/UndoableAction.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/algorithmics/StateProvider.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/algorithmics/StoppingCriteria.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/algorithmics/ObjectState.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/algorithmics/Markable.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/algorithmics/ProbabilityIterator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/algorithmics/Ranker.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/algorithmics/SearchEngine.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/UnconstrainedLikelihoodModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/SingleSplitMolecularClockLikelihoodModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/LikelihoodValue.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/SimpleUnconstrainedLikelihoodModel.java: Java source, ASCII text, with CRLF, LF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/DemographicLikelihoodValue.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/SimpleLikelihoodCalculator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/FastLikelihoodCalculator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/LikelihoodSummary.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/GeneralLikelihoodCalculator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/LikelihoodCalculator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/SimpleLeafCalculator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/LikelihoodTool.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/LHCalculator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/LikelihoodOptimiser.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/ConditionalProbabilityStore.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/FastFourStateLHCalculator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/SimpleLHCalculator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/DemographicValue.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/MolecularClockLikelihoodModel.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/eval/SiteDetails.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/SimpleModelFastFourStateLHCalculator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/ModelParameters.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/SimpleMolecularClockLikelihoodModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/eval/PatternInfo.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/eval/ChiSquareValue.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/xml/ElementParser.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/xml/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/xml/make.bat: DOS batch file, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/xml/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/xml/XmlParseException.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/xml/ElementFactory.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/DemographicClockTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/DemographicModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/CoalescentTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/CoalescentSimulator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/DemographicTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/SerialCoalescentSimulator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/ConstExpConst.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/ExponentialGrowth.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/SerialCoalescentGenerator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/CoalescentIntervals.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/ConstExpGrowth.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/SkylinePlot.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/IntervalsExtractor.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/ExpandingPopulation.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/CoalescentException.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/coalescent/ConstantPopulation.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/OrthogonalLineFunction.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/MultivariateMinimum.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/DifferentialEvolution.java: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/OrderEnumerator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/UnivariateFunction.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/MultivariateFunction.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/UrnModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/ConjugateDirectionSearch.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/GammaFunction.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/GeneralizedDEOptimizer.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/Binomial.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/MathUtils.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/MinimiserMonitor.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/OrthogonalHints.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/NumericalDerivative.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/MersenneTwisterFast.java: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/OrthogonalSearch.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/Matrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/LineFunction.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/EvaluationCounter.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/BoundsCheckedFunction.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/ConjugateGradientSearch.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/LMSSolver.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/MachineAccuracy.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/MFWithGradient.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/ErrorFunction.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/math/UnivariateMinimum.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/MutationRateModelTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/NeighborJoiningTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/LogParameterizedTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/Node.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/TreeGenerator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/Local.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/NodeFactory.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/SimulatedAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/SimpleTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/TreeOperation.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/TreeIterator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/TreeManipulator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/Tree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/UnrootedTreeInterface.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/UPGMATree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/SplitUtils.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/ReadTree.java: Pascal source, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/TreeUtils.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/AttributeNode.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/ClockTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/NodeUtils.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/RootedTreeInterface.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/TreeDistanceMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/TreeTool.java: ASCII text, with very long lines, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/RootedTreeUtils.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/SplitSystem.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/TreeParseException.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/TreeRestricter.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/CladeSystem.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/SimpleNode.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/ParameterizedTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/UnconstrainedTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/tree/ClusterTree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/DistanceMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/DistanceMatrixUtils.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/DistanceMatrixAccess.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/DistanceMatrixGenerator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/SequencePairLikelihood.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/ReadDistanceMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/DistanceParseException.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/JukesCantorDistanceMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/AlignmentDistanceMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/DistanceTool.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/distance/PairwiseDistance.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/supgma/SUPGMABase.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/supgma/SUPGMADistanceMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/supgma/ThetaHandler.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/supgma/RateHandler.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/supgma/SUPGMATree.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/FreeBranch.java: Java source, ASCII text, with CRLF, LF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/SearcherUtils.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/treesearch/SearchMonitor.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/treesearch/TreeSearchTool.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/FreeInternalNode.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/GeneralConstraintGroupManager.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/AbstractLeafNode.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/treesearch/UnconstrainedModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/GlobalClockModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/AbstractParentableConstrainedNode.java: Java source, ASCII text, with CRLF, LF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/ConstrainedNode.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/FixedSRDTGlobalClockModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/GroupLeader.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/treesearch/FreeLeafNode.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/GeneralConstructionTool.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/ConstrainedInternalNode.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/HeightInformationUser.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/treesearch/GeneralOptimisable.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/treesearch/ParentableConstrainedNode.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/treesearch/NodeAccess.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/FixedBSRDTGlobalClockModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/RootAccess.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/ConstrainedLeafNode.java: Java source, ASCII text, with CRLF, LF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/GeneralTreeComponent.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/treesearch/SRDTGlobalClockModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/ConstraintModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/PivotNode.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/BranchAccess.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/GeneralLikelihoodSearcher.java: ASCII text, with very long lines, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/FreeNode.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/MRDTGlobalClockModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/treesearch/Constants.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/treesearch/UnrootedMLSearcher.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/MatrixExponential.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/NucleotideModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/CPREV.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/AbstractRateMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/AminoAcidModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/GammaRates.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/TwoStateModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/VariableIndependentSingleSplitDistribution.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/GeneralPoissonRateMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/RateMatrixUtils.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/RateMatrixGroup.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/substmodel/Dayhoff.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/VT.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/InvariableSites.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/GeneralRateDistributionSubstitutionModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/UniformRate.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/TemporalModelChange.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/substmodel/GTR.java: exported SGML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/RateDistribution.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/F84.java: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/SequenceSimulator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/ConstantIndependentSingleSplitDistribution.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/YangCodonModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/GeneralREVRateMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/BLOSUM62.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/SaturatedSingleSplitDistribution.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/SimpleRateMatrixGroup.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/SingleSplitDistribution.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/substmodel/F81.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/NeoRateMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/AminoAcidModelID.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/SubstitutionTool.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/NucleotideModelID.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/MTREV24.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/CodonModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/NeutralSelectionRateMatrixGroup.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/HKY.java: exported SGML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/TN.java: exported SGML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/RateMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/SubstitutionModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/PositiveSelectionRateMatrixGroup.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/MultiRateMatrixHandler.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/JTT.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/WAG.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/SingleClassSubstitutionModel.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/substmodel/CachedRateMatrix.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/RateMatrixHandler.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/substmodel/ClassDistribution.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/substmodel/TransitionProbability.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/datatype/Nucleotides.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/CodonTable.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/SpecificAminoAcids.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/DataType.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/CodonTableFactory.java: C source, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/AmbiguousDataType.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/SimpleDataType.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/IUPACNucleotides.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/AminoAcids.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/NumericDataType.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/GapBalanced.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/Codons.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/MolecularDataType.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/TwoStates.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/IUPACPenaltyTable.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/DataTypeTool.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/TransitionPenaltyTable.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/StateRemover.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/CodonTableUtils.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/datatype/.#SpecificAminoAcids.java.1.6: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/ReplicateLikelihoodEvaluator.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/statistics/RELLTopologyPool.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/ShimodairaHasegawaTest.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/ChiSquareTest.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/KishinoHasegawaTest.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/ContigencyTable.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/TopologyTestEngine.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/ChiSquareDistribution.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/GeneralTopologyPool.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/DiscreteStatistics.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/ExponentialDistribution.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/GammaDistribution.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/ShimodairaHasegawaStatistics.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/statistics/ModelSupport.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/BootstrapStatistics.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/PenalizedLikelihood.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/LikelihoodRatioTest.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/NormalDistribution.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/FisherExact.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/ParetoDistribution.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/statistics/LikelihoodEvaluator.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/popgen/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/popgen/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/popgen/LinkageDisequilibrium.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/io/InputSource.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/io/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/io/FormattedOutput.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/io/FormattedInput.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/io/NexusTokenizer.java: Java source, ASCII text data/libpal-java-1.5.1+dfsg/src/pal/io/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/io/NexusParseException.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/io/OutputTarget.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/NeoParameterized.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/PalEventMulticaster.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/IdGroup.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/Parameterized.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/IdGenerator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/Nameable.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/TOCDSampleInformation.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/PalObjectListener.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/ReleaseInfo.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/MultiParameterized.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/SampleInformation.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/NamedParameterized.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/ParameterizedDoubleBundle.java: ASCII text, with very long lines data/libpal-java-1.5.1+dfsg/src/pal/misc/TableReport.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/BranchLimits.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/Utils.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/SimpleSummarizable.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/Report.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/SimpleIdGroup.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/TimeOrderCharacterData.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/Attribute.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/MutableDouble.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/ParameterEvent.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/UnitsProvider.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/PalObjectEvent.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/ParameterizedNeoWrapper.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/misc/ExternalParameterListener.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/IndividualParameterHandler.java: ASCII text data/libpal-java-1.5.1+dfsg/src/pal/misc/Units.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/Summarizable.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/TimeStamp.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/LabelMapping.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/misc/Identifier.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/mep/WindowedMutationRate.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/mep/ConstantMutationRate.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/mep/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/mep/MutationRateModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/mep/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/mep/SteppedMutationRate.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/mep/DeltaModel.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/AlignmentUtils.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/StrippedAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/IndelAnnotatedAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/ReadAlignmentOld.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/SimpleAnnotatedAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/AbstractAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/AlignmentTool.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/AlignmentGenerator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/IndelAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/MultiLocusAnnotatedAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/Alignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/AlignmentParseException.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/Genotype.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/ReadAlignment.java: Java source, ASCII text, with CRLF, LF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/SimpleCharacterAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/AlignmentReceiver.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/DataTranslator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/AlignmentBuilder.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/AnnotationAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/GapBalancedAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/BootstrappedAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/AlignmentReaders.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/CharacterAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/SimpleAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/StrippedAnnotatedAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/ConcatenatedAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/SitePattern.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/JumbledAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/alignment/ConcatenatedAnnotatedAlignment.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/ThreeNumberSort.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/HeapSort.java: C source, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/XMLConstants.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/Log.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/ComparableDouble.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/Comparator.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/DoubleKeyCache.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/makefile: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/DefaultCache.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/Comparable.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/Version.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/package.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/Logger.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/DoubleKey.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/pal/util/AlgorithmCallback.java: ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/makejike.bat: DOS batch file, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/build.xml: exported SGML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/src/makejar.bat: DOS batch file, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/related.html: HTML document, ISO-8859 text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/download.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/history.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/features.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/contributing.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/acknowledgements.html: HTML document, ISO-8859 text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/license.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/people.html: HTML document, ISO-8859 text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/index.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/online.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/user_interfaces.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/doc/pal.gif: GIF image data, version 89a, 32 x 32 data/libpal-java-1.5.1+dfsg/README.html: HTML document, ASCII text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/General: cannot open `data/libpal-java-1.5.1+dfsg/General' (No such file or directory) Notes.txt: cannot open `Notes.txt' (No such file or directory) data/libpal-java-1.5.1+dfsg/debian/ant.properties: ASCII text data/libpal-java-1.5.1+dfsg/debian/changelog: ASCII text data/libpal-java-1.5.1+dfsg/debian/compat: ASCII text data/libpal-java-1.5.1+dfsg/debian/control: ASCII text data/libpal-java-1.5.1+dfsg/debian/copyright: UTF-8 Unicode text data/libpal-java-1.5.1+dfsg/debian/libpal-java-doc.install: ASCII text data/libpal-java-1.5.1+dfsg/debian/libpal-java-doc.javadoc: ASCII text data/libpal-java-1.5.1+dfsg/debian/libpal-java.jlibs: ASCII text data/libpal-java-1.5.1+dfsg/debian/patches/TransitionProbability.patch: unified diff output, ASCII text data/libpal-java-1.5.1+dfsg/debian/patches/fix_encoding.patch: unified diff output, ISO-8859 text, with CRLF, LF line terminators data/libpal-java-1.5.1+dfsg/debian/patches/series: ASCII text data/libpal-java-1.5.1+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/libpal-java-1.5.1+dfsg/debian/source/format: ASCII text data/libpal-java-1.5.1+dfsg/debian/upstream/metadata: ASCII text data/libpal-java-1.5.1+dfsg/debian/watch: ASCII text data/libpal-java-1.5.1+dfsg/.pc/.version: ASCII text data/libpal-java-1.5.1+dfsg/.pc/.quilt_patches: ASCII text data/libpal-java-1.5.1+dfsg/.pc/.quilt_series: ASCII text data/libpal-java-1.5.1+dfsg/.pc/applied-patches: ASCII text data/libpal-java-1.5.1+dfsg/.pc/TransitionProbability.patch/src/pal/substmodel/TransitionProbability.java: empty data/libpal-java-1.5.1+dfsg/.pc/fix_encoding.patch/src/pal/distance/PairwiseDistance.java: ISO-8859 text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/.pc/fix_encoding.patch/src/pal/math/UnivariateMinimum.java: ISO-8859 text, with CRLF line terminators data/libpal-java-1.5.1+dfsg/.pc/fix_encoding.patch/src/pal/treesearch/UnrootedMLSearcher.java: ISO-8859 text, with CRLF line terminators