data/libmems-1.6.0+4725/ChangeLog: empty data/libmems-1.6.0+4725/NEWS: empty data/libmems-1.6.0+4725/TODO: very short file (no magic) data/libmems-1.6.0+4725/AUTHORS: ASCII text data/libmems-1.6.0+4725/doxygen.am: ASCII text data/libmems-1.6.0+4725/autogen.sh: POSIX shell script, ASCII text executable data/libmems-1.6.0+4725/libMems/MatchHashEntry.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/LCB.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/MatchList.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/DNAMemorySML.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/DNAFileSML.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/DNAFileSML.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/TreeUtilities.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/CompactGappedAlignment.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/MatchFinder.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/ParallelMemHash.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/FileSML.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/SlotAllocator.h: C++ source, ASCII text data/libmems-1.6.0+4725/libMems/configuration.h: C source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/SortedMerList.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/Backbone.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/SparseAbstractMatch.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/Interval.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/ProgressiveAligner.h: C++ source, ASCII text, with CRLF, CR, LF line terminators data/libmems-1.6.0+4725/libMems/SubstitutionMatrix.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/Matrix.h: C++ source, ISO-8859 text data/libmems-1.6.0+4725/libMems/RepeatMatchList.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/Memory.h: C source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/dmSML/timing.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/sml.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/buffer.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/alinuxaio.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/sorting.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/util.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/timing.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/aPOSIXaio.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/awin32aio.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/buffer.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/dmsort.h: C source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/dmSML/sml.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/awin32aio.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/sorting.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/aPOSIXaio.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/util.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/asyncio.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/asyncio.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/alinuxaio.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/alibc.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/alibc.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/dmsort.c: C source, ASCII text data/libmems-1.6.0+4725/libMems/dmSML/Makefile.am: ASCII text data/libmems-1.6.0+4725/libMems/MemHash.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/PairwiseMatchAdapter.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/twister.h: C source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/SortedMerList.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/GreedyBreakpointElimination.h: C++ source, ASCII text data/libmems-1.6.0+4725/libMems/HybridAbstractMatch.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/DistanceMatrix.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/DNAMemorySML.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/Interval.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/GreedyBreakpointElimination.cpp: C++ source, ASCII text, with very long lines, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/twister.c: C source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/MemHash.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/MuscleInterface.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/SuperInterval.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/RepeatHash.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/GappedAlignment.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/Islands.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/Islands.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/gnAlignedSequences.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/AbstractGappedAlignment.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/Scoring.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/PhyloTree.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/IntervalList.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/gnRAWSequence.h: C++ source, ASCII text data/libmems-1.6.0+4725/libMems/Match.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/NumericMatrix.h: C++ source, ASCII text data/libmems-1.6.0+4725/libMems/MatchHashEntry.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/SeedOccurrenceList.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/SlotAllocator.cpp: C source, ASCII text data/libmems-1.6.0+4725/libMems/MatchList.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/MemorySML.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/ParallelMemHash.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/GappedAligner.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/PhyloTree.cpp: C++ source, ASCII text data/libmems-1.6.0+4725/libMems/SeedMasks.h: C source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/ClustalInterface.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/PairwiseMatchFinder.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/MaskedMemHash.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/UngappedLocalAlignment.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/Backbone.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/FileSML.cpp: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/SuperInterval.cpp: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/MatchProjectionAdapter.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/PairwiseMatchFinder.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/RepeatMatch.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/RepeatMatch.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/MuscleInterface.h: C++ source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/MatchFinder.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/RepeatMatchList.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/HomologyHMM/algebras.cc: C source, ASCII text data/libmems-1.6.0+4725/libMems/HomologyHMM/homologymain.cc: C source, ASCII text data/libmems-1.6.0+4725/libMems/HomologyHMM/homology.xml: XML 1.0 document, ASCII text data/libmems-1.6.0+4725/libMems/HomologyHMM/parameters.h: C source, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/libMems/HomologyHMM/dptables.h: C++ source, ASCII text data/libmems-1.6.0+4725/libMems/HomologyHMM/algebras.h: C++ source, ASCII text data/libmems-1.6.0+4725/libMems/HomologyHMM/homology.cc: C source, ASCII text, with very long lines data/libmems-1.6.0+4725/libMems/HomologyHMM/homology.h: C++ source, ASCII text data/libmems-1.6.0+4725/libMems/DenseAbstractMatch.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/IntervalList.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/GappedAlignment.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/RepeatHash.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/ClustalInterface.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/Files.h: C source, ASCII text data/libmems-1.6.0+4725/libMems/MaskedMemHash.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/MemorySML.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/gnAlignedSequences.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/Aligner.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/Aligner.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/ProgressiveAligner.cpp: C++ source, ASCII text, with very long lines, with CRLF line terminators data/libmems-1.6.0+4725/libMems/AbstractMatch.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/libMems/Makefile.am: ASCII text data/libmems-1.6.0+4725/m4/ax_prog_doxygen.m4: M4 macro processor script, ASCII text data/libmems-1.6.0+4725/m4/ac_cxx_namespaces.m4: M4 macro processor script, ASCII text data/libmems-1.6.0+4725/m4/ax_openmp.m4: M4 macro processor script, ASCII text data/libmems-1.6.0+4725/m4/pkg.m4: M4 macro processor script, UTF-8 Unicode text data/libmems-1.6.0+4725/m4/boost.m4: M4 macro processor script, ASCII text data/libmems-1.6.0+4725/README: very short file (no magic) data/libmems-1.6.0+4725/INSTALL: ASCII text data/libmems-1.6.0+4725/COPYING: ASCII text data/libmems-1.6.0+4725/projects/libMems.sln: UTF-8 Unicode (with BOM) text, with CRLF line terminators data/libmems-1.6.0+4725/projects/libMems.vcproj: XML 1.0 document, ASCII text, with CRLF line terminators 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data/libmems-1.6.0+4725/debian/patches/automake_drop_version_info.patch: unified diff output, ASCII text data/libmems-1.6.0+4725/debian/patches/boost1.62.patch: unified diff output, ASCII text, with CRLF, LF line terminators data/libmems-1.6.0+4725/debian/patches/drop-version-number.patch: unified diff output, ASCII text data/libmems-1.6.0+4725/debian/patches/pkg-config-directive.patch: unified diff output, ASCII text data/libmems-1.6.0+4725/debian/patches/series: ASCII text data/libmems-1.6.0+4725/debian/rules: a /usr/bin/make -f script, ASCII text executable data/libmems-1.6.0+4725/debian/salsa-ci.yml: ASCII text data/libmems-1.6.0+4725/debian/source/format: ASCII text data/libmems-1.6.0+4725/debian/upstream/metadata: ASCII text data/libmems-1.6.0+4725/debian/watch: ASCII text data/libmems-1.6.0+4725/.pc/.version: ASCII text data/libmems-1.6.0+4725/.pc/.quilt_patches: ASCII text data/libmems-1.6.0+4725/.pc/.quilt_series: ASCII text data/libmems-1.6.0+4725/.pc/applied-patches: ASCII text data/libmems-1.6.0+4725/.pc/01_fix_ctors.patch/libMems/Aligner.cpp: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/.pc/01_fix_ctors.patch/libMems/Aligner.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/.pc/02_fix_a_Wformat.patch/libMems/dmSML/dmsort.c: C source, ASCII text data/libmems-1.6.0+4725/.pc/pkg-config-directive.patch/configure.ac: M4 macro processor script, ASCII text data/libmems-1.6.0+4725/.pc/03_update_boost_m4_to_git_d9ff75.patch/m4/boost.m4: M4 macro processor script, ASCII text data/libmems-1.6.0+4725/.pc/04_add_dependend_libs_to_link_command.patch/libMems/Makefile.am: ASCII text data/libmems-1.6.0+4725/.pc/05_gcc-6.patch/libMems/ProgressiveAligner.cpp: C++ source, ASCII text, with very long lines, with CRLF line terminators data/libmems-1.6.0+4725/.pc/boost1.62.patch/libMems/AbstractMatch.h: C++ source, ASCII text, with CRLF line terminators data/libmems-1.6.0+4725/.pc/drop-version-number.patch/Makefile.am: automake makefile script, ASCII text data/libmems-1.6.0+4725/.pc/drop-version-number.patch/libMems.pc.in: empty data/libmems-1.6.0+4725/.pc/drop-version-number.patch/libMems/Makefile.am: ASCII text data/libmems-1.6.0+4725/.pc/drop-version-number.patch/libMems/dmSML/Makefile.am: ASCII text data/libmems-1.6.0+4725/.pc/drop-version-number.patch/configure.ac: M4 macro processor script, ASCII text data/libmems-1.6.0+4725/.pc/drop-version-number.patch/libMems-1.6.pc.in: ASCII text data/libmems-1.6.0+4725/Makefile.am: automake makefile script, ASCII text data/libmems-1.6.0+4725/libMems.pc.in: ASCII text data/libmems-1.6.0+4725/configure.ac: M4 macro processor script, ASCII text