data/kraken2-2.1.1/.gitignore: ASCII text data/kraken2-2.1.1/.travis.yml: ASCII text data/kraken2-2.1.1/CHANGELOG.md: ASCII text data/kraken2-2.1.1/CMakeLists.txt: ASCII text data/kraken2-2.1.1/LICENSE: ASCII text data/kraken2-2.1.1/README.md: ASCII text data/kraken2-2.1.1/data/COVID_19.fa: ASCII text data/kraken2-2.1.1/data/FluA_H1N1.fa: ASCII text data/kraken2-2.1.1/data/FluA_H2N2.fa: ASCII text data/kraken2-2.1.1/data/FluA_H3N2.fa: ASCII text data/kraken2-2.1.1/data/FluB.fa: ASCII text data/kraken2-2.1.1/data/HIV_1.fa: ASCII text data/kraken2-2.1.1/data/HIV_2.fa: ASCII text data/kraken2-2.1.1/data/Lambda.fa: ASCII text data/kraken2-2.1.1/data/MERS.fa: ASCII text data/kraken2-2.1.1/data/README.md: ASCII text data/kraken2-2.1.1/data/SARS.fa: ASCII text data/kraken2-2.1.1/data/names.dmp: ASCII text data/kraken2-2.1.1/data/nodes.dmp: ASCII text data/kraken2-2.1.1/data/simulator.pl: Perl script text executable data/kraken2-2.1.1/docs/MANUAL.html: HTML document, UTF-8 Unicode text, with very long lines data/kraken2-2.1.1/docs/MANUAL.markdown: ASCII text data/kraken2-2.1.1/docs/Makefile: makefile script, ASCII text data/kraken2-2.1.1/docs/bar-bg.png: PNG image data, 30 x 20, 8-bit/color RGBA, non-interlaced data/kraken2-2.1.1/docs/head.html: ASCII text data/kraken2-2.1.1/docs/kraken.css: ASCII text data/kraken2-2.1.1/docs/top.html: ASCII text data/kraken2-2.1.1/scripts/16S_gg_installation.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/scripts/16S_rdp_installation.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/scripts/16S_silva_installation.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/scripts/add_to_library.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/scripts/build_gg_taxonomy.pl: Perl script text executable data/kraken2-2.1.1/scripts/build_kraken2_db.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/scripts/build_rdp_taxonomy.pl: Perl script text executable data/kraken2-2.1.1/scripts/build_silva_taxonomy.pl: Perl script text executable data/kraken2-2.1.1/scripts/clean_db.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/scripts/cp_into_tempfile.pl: Perl script text executable data/kraken2-2.1.1/scripts/download_genomic_library.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/scripts/download_taxonomy.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/scripts/kraken2: Perl script text executable data/kraken2-2.1.1/scripts/kraken2-build: Perl script text executable data/kraken2-2.1.1/scripts/kraken2-inspect: Perl script text executable data/kraken2-2.1.1/scripts/kraken2lib.pm: Perl5 module source, ASCII text data/kraken2-2.1.1/scripts/lookup_accession_numbers.pl: Perl script text executable data/kraken2-2.1.1/scripts/make_seqid2taxid_map.pl: Perl script text executable data/kraken2-2.1.1/scripts/mask_low_complexity.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/scripts/rsync_from_ncbi.pl: Perl script text executable data/kraken2-2.1.1/scripts/standard_installation.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/scripts/scan_fasta_file.pl: Perl script text executable data/kraken2-2.1.1/src/CMakeLists.txt: ASCII text data/kraken2-2.1.1/src/aa_translate.cc: C++ source, ASCII text data/kraken2-2.1.1/src/aa_translate.h: C source, ASCII text data/kraken2-2.1.1/src/build_db.cc: C++ source, ASCII text data/kraken2-2.1.1/src/classify.cc: C++ source, ASCII text data/kraken2-2.1.1/src/compact_hash.cc: C++ source, ASCII text data/kraken2-2.1.1/src/compact_hash.h: C++ source, ASCII text data/kraken2-2.1.1/src/dump_table.cc: C++ source, ASCII text data/kraken2-2.1.1/src/estimate_capacity.cc: C++ source, ASCII text data/kraken2-2.1.1/src/hyperloglogplus-bias.h: C source, ASCII text, with very long lines data/kraken2-2.1.1/src/hyperloglogplus.cc: C++ source, ASCII text data/kraken2-2.1.1/src/hyperloglogplus.h: C++ source, ASCII text data/kraken2-2.1.1/src/kraken2_data.h: C source, ASCII text data/kraken2-2.1.1/src/kraken2_headers.h: C source, ASCII text data/kraken2-2.1.1/src/kv_store.h: C++ source, ASCII text data/kraken2-2.1.1/src/lookup_accession_numbers.cc: C++ source, ASCII text data/kraken2-2.1.1/src/mmap_file.cc: C++ source, ASCII text data/kraken2-2.1.1/src/mmap_file.h: C++ source, ASCII text data/kraken2-2.1.1/src/mmscanner.cc: C++ source, ASCII text data/kraken2-2.1.1/src/mmscanner.h: C++ source, ASCII text data/kraken2-2.1.1/src/mmtest.cc: C++ source, ASCII text data/kraken2-2.1.1/src/omp_hack.cc: ASCII text data/kraken2-2.1.1/src/omp_hack.h: C source, ASCII text data/kraken2-2.1.1/src/readcounts.h: C++ source, ASCII text data/kraken2-2.1.1/src/reports.cc: C++ source, ASCII text data/kraken2-2.1.1/src/reports.h: C source, ASCII text data/kraken2-2.1.1/src/seqreader.cc: C++ source, ASCII text data/kraken2-2.1.1/src/seqreader.h: C++ source, ASCII text data/kraken2-2.1.1/src/taxonomy.cc: C++ source, ASCII text data/kraken2-2.1.1/src/taxonomy.h: C++ source, ASCII text data/kraken2-2.1.1/src/utilities.cc: C++ source, ASCII text data/kraken2-2.1.1/src/utilities.h: C source, ASCII text data/kraken2-2.1.1/src/Makefile: makefile script, ASCII text data/kraken2-2.1.1/debian/README.test: UTF-8 Unicode text data/kraken2-2.1.1/debian/changelog: ASCII text data/kraken2-2.1.1/debian/control: UTF-8 Unicode text data/kraken2-2.1.1/debian/copyright: ASCII text data/kraken2-2.1.1/debian/createmanpages: POSIX shell script, ASCII text executable data/kraken2-2.1.1/debian/dirs: ASCII text data/kraken2-2.1.1/debian/doc-base: UTF-8 Unicode text data/kraken2-2.1.1/debian/docs: ASCII text data/kraken2-2.1.1/debian/install: ASCII text data/kraken2-2.1.1/debian/links: ASCII text data/kraken2-2.1.1/debian/manpages: ASCII text data/kraken2-2.1.1/debian/mans/kraken2-build.1: troff or preprocessor input, ASCII text data/kraken2-2.1.1/debian/mans/kraken2-inspect.1: troff or preprocessor input, ASCII text data/kraken2-2.1.1/debian/mans/kraken2.1: troff or preprocessor input, ASCII text data/kraken2-2.1.1/debian/patches/fix_install.patch: unified diff output, ASCII text data/kraken2-2.1.1/debian/patches/fix_reading_fasta.patch: unified diff output, ASCII text data/kraken2-2.1.1/debian/patches/hardening+debug_options.patch: unified diff output, ASCII text data/kraken2-2.1.1/debian/patches/series: ASCII text data/kraken2-2.1.1/debian/rules: a /usr/bin/make -f script, ASCII text executable data/kraken2-2.1.1/debian/salsa-ci.yml: ASCII text data/kraken2-2.1.1/debian/source/format: ASCII text data/kraken2-2.1.1/debian/tests/control: ASCII text data/kraken2-2.1.1/debian/tests/run-unit-test: POSIX shell script, ASCII text executable data/kraken2-2.1.1/debian/tests/test_data/Acartia_tonsa.fasta: ASCII text data/kraken2-2.1.1/debian/tests/test_data/Acinetobacter_phage.fasta: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test.fa: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/citation.dmp: ASCII text, with very long lines data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/delnodes.dmp: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/division.dmp: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/gc.prt: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/gencode.dmp: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/gi_taxid_nucl.dmp: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/gimap.dlflag: empty data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/gimap.flag: empty data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/merged.dmp: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/names.dmp: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/nodes.dmp: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/readme.txt: ASCII text data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/taxdump.dlflag: empty data/kraken2-2.1.1/debian/tests/test_data/test_db/taxonomy/taxdump.flag: empty data/kraken2-2.1.1/debian/upstream/metadata: ASCII text data/kraken2-2.1.1/debian/watch: ASCII text data/kraken2-2.1.1/.pc/.version: ASCII text data/kraken2-2.1.1/.pc/.quilt_patches: ASCII text data/kraken2-2.1.1/.pc/.quilt_series: ASCII text data/kraken2-2.1.1/.pc/applied-patches: ASCII text data/kraken2-2.1.1/.pc/fix_install.patch/install_kraken2.sh: Bourne-Again shell script, ASCII text executable data/kraken2-2.1.1/.pc/hardening+debug_options.patch/src/Makefile: makefile script, ASCII text data/kraken2-2.1.1/.pc/fix_reading_fasta.patch/scripts/scan_fasta_file.pl: Perl script text executable data/kraken2-2.1.1/install_kraken2.sh: Bourne-Again shell script, ASCII text executable