data/kmer-0~20150903+r2013/sim4db/sim4th.C: C++ source, ASCII text data/kmer-0~20150903+r2013/sim4db/Make.include: ASCII text data/kmer-0~20150903+r2013/ESTmapper: directory GSAC.ppt: cannot open `GSAC.ppt' (No such file or directory) data/kmer-0~20150903+r2013/PACKAGING: ASCII text data/kmer-0~20150903+r2013/libutil/readBuffer.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/bitPackedArray.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/bzipBuffer.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/unaryEncodingTester.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/readBuffer.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/file.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/fibonacciEncoding.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-md5.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/tcat.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/order.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-logMsg.C: C source, ASCII text, with very long lines data/kmer-0~20150903+r2013/libutil/test/test-bitPackedArray.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-freeDiskSpace.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-types.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-readBuffer.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/Makefile: makefile script, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-mmap.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-bzipBuffer.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-palloc.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/endianess.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-intervalList.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/atomic.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-recordFile.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-bigQueue.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-bitPackedFile.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/test/test-bitPacking.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/bzipBuffer.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/uint32List.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/util++.H: C source, ASCII text data/kmer-0~20150903+r2013/libutil/bitPackedArray.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/bigQueue.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/speedCounter.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/fibonacciNumbers.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/sweatShop.C: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/recordFile.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/eliasGammaEncoding.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/recordFile.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/sweatShop.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/speedCounter.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/md5.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/splitToWords.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/qsort_mt.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/bitOperations.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/logMsg.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/dict.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/dict.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/sfx.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/list.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/docs/docs.ltx: LaTeX 2e document, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/docs/docs.ist: LaTeX document, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/docs/CHANGES: ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/docs/README: ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/docs/MUST_READ: ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/except.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/drivers/list-main.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/drivers/sfx-main.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/drivers/hash-main.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/drivers/dict-main.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/drivers/except-main.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/hash.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/list.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/sfx.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/Make.include: ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/except.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/hash.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/kazlib/blast.pl: Perl script text executable data/kmer-0~20150903+r2013/libutil/generalizedUnaryEncoding.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/Make.include: ASCII text data/kmer-0~20150903+r2013/libutil/bitPacking.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/NOTES: ASCII text data/kmer-0~20150903+r2013/libutil/eliasDeltaEncoding.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/endianess.H: C source, ASCII text data/kmer-0~20150903+r2013/libutil/bitPackedFile.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/util.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/unaryEncoding.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/bigQueue.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.h: C source, ASCII text data/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.out: ASCII text data/kmer-0~20150903+r2013/libutil/mt19937ar/tt800.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/mt19937ar/Make.include: ASCII text data/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar-test.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.readme: ASCII text data/kmer-0~20150903+r2013/libutil/util.c: C source, ASCII text data/kmer-0~20150903+r2013/libutil/intervalList.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libutil/bitPackedFile.C: C source, ASCII text data/kmer-0~20150903+r2013/libutil/palloc.c: C source, ASCII text data/kmer-0~20150903+r2013/README.sim4db: ASCII text data/kmer-0~20150903+r2013/libseq/sffFile.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libseq/fastqFile.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/test/Makefile: makefile script, ASCII text data/kmer-0~20150903+r2013/libseq/test/test-merstream-speed.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/seqStream.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libseq/fastqStdin.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libseq/selftest.C: ASCII text data/kmer-0~20150903+r2013/libseq/merStream.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/test-merStream.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/merStream.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libseq/seqCache.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/seqFactory.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/seqStore.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/fastqStdin.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/test-correctSequence.H: C source, ASCII text data/kmer-0~20150903+r2013/libseq/fastaStdin.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/fastqFile.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libseq/seqStore.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libseq/Make.include: ASCII text data/kmer-0~20150903+r2013/libseq/fastaFile.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libseq/sffFile.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/fastaFile.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/seqStream.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/seqFile.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libseq/test-seqStream.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/test-seqCache.C: C source, ASCII text data/kmer-0~20150903+r2013/libseq/seqCache.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libseq/seqFactory.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libseq/fastaStdin.H: C++ source, ASCII text data/kmer-0~20150903+r2013/Make.rules: ASCII text data/kmer-0~20150903+r2013/seagen/thr-loader.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/thr-output.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/filterEST.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/aHit.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/test/encodedQueryTest.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/test/intervalList-test.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/misc/f.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/misc/dumpCrapSeqs.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/misc/h.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/searcherState.H: C++ source, ASCII text data/kmer-0~20150903+r2013/seagen/configuration.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/hitMatrix.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/searchGENOME.H: C source, ASCII text data/kmer-0~20150903+r2013/seagen/searchGENOME.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/encodedQuery.H: C++ source, ASCII text data/kmer-0~20150903+r2013/seagen/hitReader.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/hitMatrix.H: C++ source, ASCII text data/kmer-0~20150903+r2013/seagen/filterEST-complicated.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/sortHits.C: C++ source, ASCII text data/kmer-0~20150903+r2013/seagen/filtertest.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/analysis/dumpScores.pl: Perl script text executable data/kmer-0~20150903+r2013/seagen/analysis/plotScoresSingly.pl: Perl script text executable data/kmer-0~20150903+r2013/seagen/aHit.H: C source, ASCII text data/kmer-0~20150903+r2013/seagen/filterESTsimple.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/posix.H: empty data/kmer-0~20150903+r2013/seagen/configuration.H: C++ source, ASCII text data/kmer-0~20150903+r2013/seagen/hitMatrix-sort.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/thr-deadlock.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/Make.include: ASCII text data/kmer-0~20150903+r2013/seagen/hitConverter.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/hitReader.H: C++ source, ASCII text data/kmer-0~20150903+r2013/seagen/filterNULL.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/encodedQuery.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/thr-search.C: C source, ASCII text data/kmer-0~20150903+r2013/seagen/filterMRNA.C: C source, ASCII text data/kmer-0~20150903+r2013/trie/trie.C: C++ source, ASCII text data/kmer-0~20150903+r2013/trie/Make.include: ASCII text data/kmer-0~20150903+r2013/Makefile: ASCII text data/kmer-0~20150903+r2013/atac-driver/mismatchCounter/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/mismatchCounter/mismatchCounter.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/interscaffold-gaps.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/lengthFilter/lengthFilter.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/lengthFilter/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/test/uf-test-3.atac: ASCII text data/kmer-0~20150903+r2013/atac-driver/test/uf-test-2.atac: ASCII text data/kmer-0~20150903+r2013/atac-driver/test/uf-test-1f.atac: ASCII text data/kmer-0~20150903+r2013/atac-driver/test/uf-test-1r.atac: ASCII text data/kmer-0~20150903+r2013/atac-driver/relabel.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/gapShifter/testAtac.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/projectFeatures.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/coalesceMatches.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/extractUnmapped.C: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/alignUnmapped.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/projectFeatures-test-cases/test.atac.log: ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/projectFeatures-test-cases/test.ataf: ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/projectFeatures-test-cases/test.log: empty data/kmer-0~20150903+r2013/atac-driver/gapShifter/projectFeatures-test-cases/test.atac: ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/projectFeatures-test-cases/test-rev.atac: ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/cleanAtac.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/extractUnmapped-sim4dbFixer.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/gapShifter/extractSequence.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/correctGaps.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/gapShifter/gapShifter.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacFile.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacFeatureList.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacFileStreamMerge.C: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacMatchList.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atac.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacFeatureList.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor-test.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacMatchOrder.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacMatchOrder.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/libatac/atacMatchList.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/run-comparison.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/matchExtender/match.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/matchExtender/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/matchExtender/matchExtender-func.C: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/matchExtender/matchExtender.C: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/matchExtender/matchExtender-dump.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/run-length-n50.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/uniqueFilter/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/uniqueFilter/uniqueFilter.C: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/makeplot.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/chimera/happy-clones-span-clumps.C: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chimera/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/chimera/use-clumps-to-detect-chimera.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/chainer/python/DNA.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/atac-driver/chainer/python/AtacDriver.txt: ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/python/AtacDriver.py: Objective-C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/python/AtacFile.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/atac-driver/chainer/python/IdxStore.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/atac-driver/chainer/python/MatchRecord.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/atac-driver/chainer/python/MyFile.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/atac-driver/chainer/python/PerfectRuns.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/atac-driver/chainer/python/TrimMatchOverlaps.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/atac-driver/chainer/python/UniqueFilter.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/atac-driver/chainer/python/dedashMatches.py: Objective-C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/python/fillIntraRunGaps.py: Objective-C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/python/mkstats.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/atac-driver/chainer/python/squeezeIntraRunGaps.py: Objective-C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/localalign/GF_ALN_local.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/localalign/GF_ALN_pieceOlap.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/localalign/GF_ALN_loverlapper.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/localalign/GF_ALN_dpaligner.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/localalign/GF_ALN_local.H: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/localalign/GF_ALN_overlap.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/localalign/localAlignerInterfacemodule.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/halign/halign.H: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/halign/halign.C: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/halign/halignDriver.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/chainer/halign/halignmodule.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/runatac.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/clumpMaker/clumpMaker.C: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/clumpMaker/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/statsGenerator/stats-to-xls.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/statsGenerator/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/statsGenerator/statsGenerator.C: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/run-length-histogram.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/summarizeDisagree.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-printAnno.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-find.C: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/findDifferentScaffold.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-sort.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/Make.include: ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-annoList.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-matchTree.C: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-span.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-spanTree.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap.H: C source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-stats.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-matchTree.H: C++ source, ASCII text data/kmer-0~20150903+r2013/atac-driver/rewriteUIDs.pl: Perl script text executable data/kmer-0~20150903+r2013/atac-driver/config.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/atac-driver/atac.pl: Perl script text executable data/kmer-0~20150903+r2013/libsim4/sim4.H: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.pm: Perl script text executable data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/Make.include: ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/Make.include: ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.H: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/poly.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.H: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/greedy.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/CHANGES: ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/splice.C: C source, ASCII text, with very long lines data/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/Make.include: ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sites.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4defines.H: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/util.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/table.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/GlimmerModels/acceptors.162.pos.icm: data data/kmer-0~20150903+r2013/libsim4/sim4core/GlimmerModels/donors.162.pos.icm: data data/kmer-0~20150903+r2013/libsim4/sim4core/GlimmerModels/donors.162.neg.icm: data data/kmer-0~20150903+r2013/libsim4/sim4core/GlimmerModels/acceptors.162.neg.icm: data data/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.H: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.H: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/extend.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/exon.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.C: C source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/align.C: C++ source, ASCII text data/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.C: C source, ASCII text data/kmer-0~20150903+r2013/leaff/gc.C: C source, ASCII text data/kmer-0~20150903+r2013/leaff/stats.C: C++ source, ASCII text data/kmer-0~20150903+r2013/leaff/blocks.C: C source, ASCII text data/kmer-0~20150903+r2013/leaff/simseq.C: C source, ASCII text data/kmer-0~20150903+r2013/leaff/dups.C: C source, ASCII text data/kmer-0~20150903+r2013/leaff/fragmenter.C: C source, ASCII text data/kmer-0~20150903+r2013/leaff/Make.include: ASCII text data/kmer-0~20150903+r2013/leaff/partition.C: C source, ASCII text data/kmer-0~20150903+r2013/leaff/leaff.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/merge.listmerge.C: C++ source, ASCII text data/kmer-0~20150903+r2013/meryl/meryl.H: C++ source, ASCII text data/kmer-0~20150903+r2013/meryl/maskMers.C: C++ source, ASCII text data/kmer-0~20150903+r2013/meryl/test/test-seq1.fasta: ASCII text data/kmer-0~20150903+r2013/meryl/test/Makefile: makefile script, ASCII text data/kmer-0~20150903+r2013/meryl/test/stupidcount.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/test/test-seq3.fasta: ASCII text data/kmer-0~20150903+r2013/meryl/test/kmerlite.H: C++ source, ASCII text data/kmer-0~20150903+r2013/meryl/test/test-seq2.fasta: ASCII text data/kmer-0~20150903+r2013/meryl/test/exhaustive.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/build.C: C++ source, ASCII text data/kmer-0~20150903+r2013/meryl/mapMers-depth.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/mervin.C: C++ source, ASCII text data/kmer-0~20150903+r2013/meryl/simple.C: C++ source, ASCII text data/kmer-0~20150903+r2013/meryl/kmer-mask.C: C++ source, ASCII text data/kmer-0~20150903+r2013/meryl/meryl.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/estimate.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/mapMers.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/compare-counts.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/binaryOp.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/Make.include: ASCII text data/kmer-0~20150903+r2013/meryl/dump.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/asmMerQC.sh: POSIX shell script, ASCII text executable data/kmer-0~20150903+r2013/meryl/args.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/asmMerQC-regions.C: C++ source, ASCII text data/kmer-0~20150903+r2013/meryl/merge.qsort.C: C++ source, ASCII text data/kmer-0~20150903+r2013/meryl/unaryOp.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/build-threads.C: C source, ASCII text data/kmer-0~20150903+r2013/meryl/merge.C: C source, ASCII text data/kmer-0~20150903+r2013/README.leaff: ASCII text data/kmer-0~20150903+r2013/Make.include: ASCII text data/kmer-0~20150903+r2013/libbio/alphabet-acgtspace.c: C source, ASCII text data/kmer-0~20150903+r2013/libbio/reversecomplement.c: C source, ASCII text data/kmer-0~20150903+r2013/libbio/merCovering.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libbio/test/Makefile: makefile script, ASCII text data/kmer-0~20150903+r2013/libbio/test/test-setbits.C: C source, ASCII text data/kmer-0~20150903+r2013/libbio/test/halign-test.C: C source, ASCII text, with very long lines data/kmer-0~20150903+r2013/libbio/test/test-bigmer-msf.C: C source, ASCII text data/kmer-0~20150903+r2013/libbio/halign.c: C source, ASCII text data/kmer-0~20150903+r2013/libbio/kmer.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libbio/kmertiny.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libbio/alphabet.c: ASCII text, with very long lines data/kmer-0~20150903+r2013/libbio/mers.h: C source, ASCII text data/kmer-0~20150903+r2013/libbio/merList.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libbio/bio.h: C source, ASCII text data/kmer-0~20150903+r2013/libbio/Make.include: ASCII text data/kmer-0~20150903+r2013/libbio/kmerhuge.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libbio/alphabet-generate.c: C source, ASCII text data/kmer-0~20150903+r2013/libbio/alphabet.h: C source, ASCII text data/kmer-0~20150903+r2013/libbio/alphabet-colorspace.c: C source, ASCII text data/kmer-0~20150903+r2013/libbio/kmeriface.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libbio/kmer.C: C source, ASCII text data/kmer-0~20150903+r2013/libbio/bio++.H: C source, ASCII text data/kmer-0~20150903+r2013/seatac/thr-loader.C: C source, ASCII text data/kmer-0~20150903+r2013/seatac/filter-nop.C: C++ source, ASCII text data/kmer-0~20150903+r2013/seatac/configuration.C: C source, ASCII text data/kmer-0~20150903+r2013/seatac/hitMatrix.C: C source, ASCII text data/kmer-0~20150903+r2013/seatac/filterObj.H: C++ source, ASCII text data/kmer-0~20150903+r2013/seatac/hitMatrix.H: C++ source, ASCII text data/kmer-0~20150903+r2013/seatac/statObj.H: C++ source, ASCII text data/kmer-0~20150903+r2013/seatac/seatac.H: C++ source, ASCII text data/kmer-0~20150903+r2013/seatac/filter-heavychains.C: C++ source, ASCII text data/kmer-0~20150903+r2013/seatac/posix.H: empty data/kmer-0~20150903+r2013/seatac/seatac.C: C source, ASCII text data/kmer-0~20150903+r2013/seatac/hitMatrix-sort.C: C source, ASCII text data/kmer-0~20150903+r2013/seatac/heavychains.H: C++ source, ASCII text data/kmer-0~20150903+r2013/seatac/thr-deadlock.C: C source, ASCII text data/kmer-0~20150903+r2013/seatac/Make.include: ASCII text data/kmer-0~20150903+r2013/seatac/encodedQuery.C: C source, ASCII text data/kmer-0~20150903+r2013/seatac/heavychains.C: C source, ASCII text data/kmer-0~20150903+r2013/seatac/thr-search.C: C++ source, ASCII text data/kmer-0~20150903+r2013/seatac/heavychains-driver.C: C source, ASCII text data/kmer-0~20150903+r2013/seatac/summarizeAtacStats.pl: Perl script text executable data/kmer-0~20150903+r2013/seatac/sharedObj.H: C++ source, ASCII text data/kmer-0~20150903+r2013/ESTmapper: directory GSAC.pdf: cannot open `GSAC.pdf' (No such file or directory) data/kmer-0~20150903+r2013/sim4dbutils/pickUniquePolish.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/summarizePolishes.C: C++ source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/uniqPolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/coveragehack.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/pickUniquePolish-nhgri.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/test/parsesnp-snp.fasta: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/test/parsesnp-correct-parsed: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/test/parsesnp-gen.fasta: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/depthOfPolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/removeRedundant.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/sortPolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/trimExons.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/comparePolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/vennPolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/removeDuplicate.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/mergePolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/s4p_overlap.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/cleanPolishes-experiments/intronstats.pl: Perl script text executable data/kmer-0~20150903+r2013/sim4dbutils/cleanPolishes-experiments/evalThresh.pl.out: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/cleanPolishes-experiments/evalThresh.pl: Perl script text executable data/kmer-0~20150903+r2013/sim4dbutils/cleanPolishes-experiments/evalThresh.ps: PostScript document text conforming DSC level 2.0 data/kmer-0~20150903+r2013/sim4dbutils/cleanPolishes-experiments/dbEST-intronSize-histogram: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/cleanPolishes-experiments/evalThresh-gnuplot: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/cleanPolishes-experiments/evalThresh.dat: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/cleanPolishes-experiments/evalThresh-plot.pl: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/filterPolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/cleanPolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/pickBestPolish.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/mappedCoverage.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/doc.txt: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/Make.include: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/plotCoverageVsIdentity.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/realignPolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/trimSequencesBasedOnMatches.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/reportAlignmentDifferences.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/fixPolishesIID.C: C++ source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/LOG: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/detectChimera.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/README: ASCII text data/kmer-0~20150903+r2013/sim4dbutils/convertPolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/pickBestPair.C: C++ source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/s4p_overlap.H: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/cleanPolishes-20020626.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/convertToAtac.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/convertToExtent.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/plotIntronSize.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/headPolishes.C: C source, ASCII text data/kmer-0~20150903+r2013/sim4dbutils/parseSNP.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/positionDB-access.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/merTable.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libkmer/test/Makefile: makefile script, ASCII text data/kmer-0~20150903+r2013/libkmer/test/test-mertable.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/test/test-rebuild.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/test/test-maskonly.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/existDB-state.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/existDB.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/positionDB.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libkmer/positionDB-sort.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/positionDB-file.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/positionDB-dump.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/existDB.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/Make.include: ASCII text data/kmer-0~20150903+r2013/libkmer/driver-posDB.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/positionDB.C: C source, ASCII text data/kmer-0~20150903+r2013/libkmer/driver-existDB.C: C source, ASCII text data/kmer-0~20150903+r2013/snapper/snapper2.C: C source, ASCII text data/kmer-0~20150903+r2013/snapper/thr-polish-dp.C: C++ source, ASCII text data/kmer-0~20150903+r2013/snapper/snapper2-sge.pl: Perl script text executable data/kmer-0~20150903+r2013/snapper/test/Makefile: makefile script, ASCII text data/kmer-0~20150903+r2013/snapper/configuration.C: C source, ASCII text data/kmer-0~20150903+r2013/snapper/hitMatrix.C: C source, ASCII text data/kmer-0~20150903+r2013/snapper/snapper2.H: C++ source, ASCII text data/kmer-0~20150903+r2013/snapper/eval/domap14.sh: POSIX shell script, ASCII text executable data/kmer-0~20150903+r2013/snapper/eval/filter-validate.pl: Perl script text executable data/kmer-0~20150903+r2013/snapper/thr-filter.C: C source, ASCII text data/kmer-0~20150903+r2013/snapper/hitMatrix-sort.C: C source, ASCII text data/kmer-0~20150903+r2013/snapper/thr-polish.C: C source, ASCII text data/kmer-0~20150903+r2013/snapper/Make.include: ASCII text data/kmer-0~20150903+r2013/snapper/thr-search.C: C++ source, ASCII text data/kmer-0~20150903+r2013/README.compiling: ASCII text data/kmer-0~20150903+r2013/ESTmapper: directory LaTeX/mrna-filter.ps: cannot open `LaTeX/mrna-filter.ps' (No such file or directory) data/kmer-0~20150903+r2013/ESTmapper: directory LaTeX/hash-tables.tex: cannot open `LaTeX/hash-tables.tex' (No such file or directory) data/kmer-0~20150903+r2013/ESTmapper: directory LaTeX/filter.fig: cannot open `LaTeX/filter.fig' (No such file or directory) data/kmer-0~20150903+r2013/ESTmapper: directory LaTeX/blurb: cannot open `LaTeX/blurb' (No such file or directory) data/kmer-0~20150903+r2013/ESTmapper: directory LaTeX/hit-filtering.tex: cannot open `LaTeX/hit-filtering.tex' (No such file or directory) data/kmer-0~20150903+r2013/ESTmapper: directory LaTeX/filter.eps: cannot open `LaTeX/filter.eps' (No such file or directory) data/kmer-0~20150903+r2013/ESTmapper: directory LaTeX/ESTmapper.tex: cannot open `LaTeX/ESTmapper.tex' (No such file or directory) data/kmer-0~20150903+r2013/ESTmapper: directory LaTeX/mrna-filter.tex: cannot open `LaTeX/mrna-filter.tex' (No such file or directory) data/kmer-0~20150903+r2013/ESTmapper: directory LaTeX/mRNAfilt.eps: cannot open `LaTeX/mRNAfilt.eps' (No such file or directory) data/kmer-0~20150903+r2013/ESTmapper: directory LaTeX/mRNAfilt.fig: cannot open `LaTeX/mRNAfilt.fig' (No such file or directory) data/kmer-0~20150903+r2013/libmeryl/libmeryl.H: C++ source, ASCII text data/kmer-0~20150903+r2013/libmeryl/libmeryl.C: C source, ASCII text data/kmer-0~20150903+r2013/libmeryl/Make.include: ASCII text data/kmer-0~20150903+r2013/tapper/tapperAlignment.H: C++ source, ASCII text data/kmer-0~20150903+r2013/tapper/tappermerge.C: C source, ASCII text data/kmer-0~20150903+r2013/tapper/tapperComputation.H: C++ source, ASCII text data/kmer-0~20150903+r2013/tapper/tappererrorcorrect.C: C++ source, ASCII text data/kmer-0~20150903+r2013/tapper/tapperThreadData.H: C++ source, ASCII text data/kmer-0~20150903+r2013/tapper/compare.pl: Perl script text executable data/kmer-0~20150903+r2013/tapper/tapperconvert.C: C source, ASCII text data/kmer-0~20150903+r2013/tapper/tagger.C: C source, ASCII text data/kmer-0~20150903+r2013/tapper/tapperHit.H: C++ source, ASCII text data/kmer-0~20150903+r2013/tapper/tapper.C: C source, ASCII text data/kmer-0~20150903+r2013/tapper/Make.include: ASCII text data/kmer-0~20150903+r2013/tapper/tapperResult.H: C++ source, ASCII text data/kmer-0~20150903+r2013/tapper/tappersort.C: C source, ASCII text data/kmer-0~20150903+r2013/tapper/tapperTag.H: C++ source, ASCII text data/kmer-0~20150903+r2013/tapper/tapperGlobalData.H: C++ source, ASCII text data/kmer-0~20150903+r2013/README.meryl: ASCII text data/kmer-0~20150903+r2013/ESTmapper/scheduler.pm: Perl script text executable data/kmer-0~20150903+r2013/ESTmapper/mergeCounts.C: C source, ASCII text data/kmer-0~20150903+r2013/ESTmapper/runConcurrently.pl: Perl script text executable data/kmer-0~20150903+r2013/ESTmapper/terminate.C: C++ source, ASCII text data/kmer-0~20150903+r2013/ESTmapper/ESTmapper.pl: Perl script text executable data/kmer-0~20150903+r2013/ESTmapper/Make.include: ASCII text data/kmer-0~20150903+r2013/ESTmapper/configureESTmapper.pl: Perl script text executable data/kmer-0~20150903+r2013/debian/README.source: ASCII text data/kmer-0~20150903+r2013/debian/README.test: ASCII text data/kmer-0~20150903+r2013/debian/atac.docs: ASCII text data/kmer-0~20150903+r2013/debian/atac.install: ASCII text data/kmer-0~20150903+r2013/debian/atac.manpages: ASCII text data/kmer-0~20150903+r2013/debian/changelog: UTF-8 Unicode text data/kmer-0~20150903+r2013/debian/control: ASCII text data/kmer-0~20150903+r2013/debian/copyright: UTF-8 Unicode text data/kmer-0~20150903+r2013/debian/get-orig-source: POSIX shell script, ASCII text executable data/kmer-0~20150903+r2013/debian/kmer-examples.README.Debian: ASCII text data/kmer-0~20150903+r2013/debian/kmer-examples.docs: ASCII text data/kmer-0~20150903+r2013/debian/leaff.docs: ASCII text data/kmer-0~20150903+r2013/debian/leaff.install: ASCII text data/kmer-0~20150903+r2013/debian/leaff.manpages: ASCII text data/kmer-0~20150903+r2013/debian/libkmer-dev.install: a /usr/bin/dh-exec script, ASCII text executable data/kmer-0~20150903+r2013/debian/libmeryl-dev.install: a /usr/bin/dh-exec script, ASCII text executable data/kmer-0~20150903+r2013/debian/man/atac/atac.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/man/leaff/leaff.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/man/meryl/existDB.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/man/meryl/kmer-mask.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/man/meryl/mapMers-depth.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/man/meryl/mapMers.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/man/meryl/meryl.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/man/meryl/positionDB.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/man/meryl/simple.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/man/sim4db/sim4db.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/man/sim4db/sim4dbutils.1: troff or preprocessor input, ASCII text data/kmer-0~20150903+r2013/debian/meryl.docs: ASCII text data/kmer-0~20150903+r2013/debian/meryl.install: ASCII text data/kmer-0~20150903+r2013/debian/meryl.manpages: ASCII text data/kmer-0~20150903+r2013/debian/patches/2to3.patch: unified diff output, ASCII text data/kmer-0~20150903+r2013/debian/patches/allow-freebsd-build.patch: unified diff output, ASCII text data/kmer-0~20150903+r2013/debian/patches/atac-helper-script-paths.patch: unified diff output, ASCII text data/kmer-0~20150903+r2013/debian/patches/atac-readme.patch: unified diff output, ASCII text data/kmer-0~20150903+r2013/debian/patches/fix_wrong_evaluation_order.patch: unified diff output, ASCII text data/kmer-0~20150903+r2013/debian/patches/linux-cflags.patch: unified diff output, ASCII text data/kmer-0~20150903+r2013/debian/patches/series: ASCII text data/kmer-0~20150903+r2013/debian/patches/spelling.patch: unified diff output, ASCII text data/kmer-0~20150903+r2013/debian/rules: makefile script, ASCII text data/kmer-0~20150903+r2013/debian/salsa-ci.yml: ASCII text data/kmer-0~20150903+r2013/debian/sim4db.docs: ASCII text data/kmer-0~20150903+r2013/debian/sim4db.install: ASCII text data/kmer-0~20150903+r2013/debian/sim4db.manpages: ASCII text data/kmer-0~20150903+r2013/debian/source/format: ASCII text data/kmer-0~20150903+r2013/debian/source/include-binaries: ASCII text data/kmer-0~20150903+r2013/debian/tests/atac-unit-test: POSIX shell script, ASCII text executable data/kmer-0~20150903+r2013/debian/tests/control: ASCII text data/kmer-0~20150903+r2013/debian/tests/sim4db-unit-test: POSIX shell script, ASCII text executable data/kmer-0~20150903+r2013/debian/tests/test-data/test_data.tar.gz: gzip compressed data, last modified: Thu Jun 14 11:05:33 2018, from Unix, original size modulo 2^32 7792640 data/kmer-0~20150903+r2013/debian/upstream/metadata: ASCII text data/kmer-0~20150903+r2013/debian/watch: ASCII text data/kmer-0~20150903+r2013/.pc/.version: ASCII text data/kmer-0~20150903+r2013/.pc/.quilt_patches: ASCII text data/kmer-0~20150903+r2013/.pc/.quilt_series: ASCII text data/kmer-0~20150903+r2013/.pc/applied-patches: ASCII text data/kmer-0~20150903+r2013/.pc/allow-freebsd-build.patch/configure.sh: POSIX shell script, ASCII text executable data/kmer-0~20150903+r2013/.pc/atac-helper-script-paths.patch/atac-driver/atac.pl: Perl script text executable data/kmer-0~20150903+r2013/.pc/atac-readme.patch/README.atac: ASCII text data/kmer-0~20150903+r2013/.pc/spelling.patch/libutil/bitPackedFile.C: C source, ASCII text data/kmer-0~20150903+r2013/.pc/spelling.patch/libutil/palloc.c: C source, ASCII text data/kmer-0~20150903+r2013/.pc/spelling.patch/libkmer/driver-existDB.C: C source, ASCII text data/kmer-0~20150903+r2013/.pc/spelling.patch/sim4dbutils/parseSNP.C: C source, ASCII text data/kmer-0~20150903+r2013/.pc/spelling.patch/leaff/leaff.C: C source, ASCII text data/kmer-0~20150903+r2013/.pc/linux-cflags.patch/configure.sh: POSIX shell script, ASCII text executable data/kmer-0~20150903+r2013/.pc/fix_wrong_evaluation_order.patch/atac-driver/libatac/atacMatchList.C: C source, ASCII text data/kmer-0~20150903+r2013/.pc/2to3.patch/Makefile.wiki: ASCII text data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/AtacDriver.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/AtacFile.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/IdxStore.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/MatchRecord.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/MyFile.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/PerfectRuns.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/TrimMatchOverlaps.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/UniqueFilter.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/dedashMatches.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/fillIntraRunGaps.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/mkstats.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/python/squeezeIntraRunGaps.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/localalign/localAlignerInterfacemodule.C: C source, ASCII text data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/chainer/halign/halignmodule.C: C source, ASCII text data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/config.py: Python script, ASCII text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/atac-driver/atac.pl: Perl script text executable data/kmer-0~20150903+r2013/.pc/2to3.patch/configure.sh: POSIX shell script, ASCII text executable data/kmer-0~20150903+r2013/README.atac: ASCII text data/kmer-0~20150903+r2013/Makefile.wiki: ASCII text data/kmer-0~20150903+r2013/configure.sh: POSIX shell script, ASCII text executable