data/jaligner-1.0+dfsg/LICENSE: ASCII text data/jaligner-1.0+dfsg/README: UTF-8 Unicode text data/jaligner-1.0+dfsg/README.md: UTF-8 Unicode text, with very long lines data/jaligner-1.0+dfsg/build.properties: HTML document, ASCII text data/jaligner-1.0+dfsg/build.xml: ASCII text, with very long lines data/jaligner-1.0+dfsg/src/jaligner/Alignment.java: Perl5 module source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/Cell.java: Perl5 module source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/Directions.java: Perl5 module source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/Markups.java: Perl5 module source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/NeedlemanWunsch.java: Perl5 module source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/Sequence.java: Perl5 module source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/SmithWatermanGotoh.java: Perl5 module source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/TracebackNode.java: Perl5 module source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/example/NeedlemanWunschExample.java: C source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/example/NeedlemanWunschGotohExample.java: C source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/example/SmithWatermanGotohExample.java: C source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/example/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/example/sequences/p53_human.fasta: ASCII text data/jaligner-1.0+dfsg/src/jaligner/example/sequences/p53_mouse.fasta: ASCII text data/jaligner-1.0+dfsg/src/jaligner/formats/CLUSTAL.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/formats/FASTA.java: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/formats/Format.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/formats/FormatFactory.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/formats/Pair.java: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/formats/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/MatricesCompartor.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/Matrix.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/MatrixGenerator.java: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/MatrixLoader.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/MatrixLoaderException.java: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/BLOSUM100: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/BLOSUM30: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/BLOSUM35: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/BLOSUM40: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/BLOSUM45: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/BLOSUM50: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/BLOSUM55: 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data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/MATCH: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM10: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM100: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM110: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM120: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM130: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM140: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM150: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM160: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM170: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM180: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM190: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM20: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM200: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM210: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM220: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM230: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM240: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM250: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM260: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM270: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM280: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM290: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM30: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM300: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM310: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM320: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM330: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM340: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM350: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM360: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM370: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM380: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM390: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM40: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM400: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM410: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM420: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM430: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM440: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM450: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM460: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM470: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM480: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM490: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM50: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM500: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM60: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM70: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM80: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/matrices/PAM90: ASCII text data/jaligner-1.0+dfsg/src/jaligner/matrix/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/test/NeedlemanWunschGotohTester.java: C source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/test/NeedlemanWunschTester.java: C source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/test/RandomSequenceGenerator.java: C source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/test/SmithWatermanGotohTester.java: C source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/test/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/AlignCommandLine.java: C source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/AlignWindow.form: XML 1.0 document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/AlignWindow.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/clipboard/ClipboardHandler.java: ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/clipboard/ClipboardHandlerAWT.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/clipboard/ClipboardHandlerFactory.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/clipboard/ClipboardHandlerJNLP.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/clipboard/ClipboardListener.java: ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/clipboard/ClipboardPoller.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/clipboard/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/filechooser/FileChooser.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/filechooser/FileChooserException.java: ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/filechooser/FileChooserFactory.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/filechooser/FileChooserJNLP.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/filechooser/FileChooserTrusted.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/filechooser/NamedInputStream.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/filechooser/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/images/ToolbarIcons.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/images/gifs/jaligner.gif: GIF image data, version 89a, 24 x 24 data/jaligner-1.0+dfsg/src/jaligner/ui/images/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/logging/DocumentHandler.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/logging/RecordFormatter.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/logging/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/util/PrintJobMointor.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/util/TextComponentUtil.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/util/TextComponentUtilException.java: ASCII text data/jaligner-1.0+dfsg/src/jaligner/ui/util/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/util/Commons.java: Java source, ASCII text data/jaligner-1.0+dfsg/src/jaligner/util/SequenceParser.java: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/util/SequenceParserException.java: ASCII text data/jaligner-1.0+dfsg/src/jaligner/util/package.html: HTML document, ASCII text data/jaligner-1.0+dfsg/src/jaligner/NeedlemanWunschGotoh.java: Perl5 module source, ASCII text data/jaligner-1.0+dfsg/debian/README.test: UTF-8 Unicode text data/jaligner-1.0+dfsg/debian/bin/jaligner: POSIX shell script, ASCII text executable data/jaligner-1.0+dfsg/debian/changelog: ASCII text data/jaligner-1.0+dfsg/debian/control: ASCII text data/jaligner-1.0+dfsg/debian/copyright: ASCII text data/jaligner-1.0+dfsg/debian/docs: ASCII text data/jaligner-1.0+dfsg/debian/examples: ASCII text data/jaligner-1.0+dfsg/debian/images/about.gif: GIF image data, version 89a, 16 x 16 data/jaligner-1.0+dfsg/debian/images/close.gif: GIF image data, version 89a, 16 x 16 data/jaligner-1.0+dfsg/debian/images/copy.gif: GIF image data, version 89a, 16 x 16 data/jaligner-1.0+dfsg/debian/images/create-icons-replacements-from-gnome-icon-theme: POSIX shell script, ASCII text executable data/jaligner-1.0+dfsg/debian/images/cut.gif: GIF image data, version 89a, 16 x 16 data/jaligner-1.0+dfsg/debian/images/delete.gif: GIF image data, version 89a, 16 x 16 data/jaligner-1.0+dfsg/debian/images/open.gif: GIF image data, version 89a, 16 x 16 data/jaligner-1.0+dfsg/debian/images/paste.gif: GIF image data, version 89a, 16 x 16 data/jaligner-1.0+dfsg/debian/images/print.gif: GIF image data, version 89a, 16 x 16 data/jaligner-1.0+dfsg/debian/images/save.gif: GIF image data, version 89a, 16 x 16 data/jaligner-1.0+dfsg/debian/install: ASCII text data/jaligner-1.0+dfsg/debian/jaligner-1.0.pom: XML 1.0 document, ASCII text data/jaligner-1.0+dfsg/debian/jaligner.adoc: ASCII text data/jaligner-1.0+dfsg/debian/jaligner.poms: ASCII text data/jaligner-1.0+dfsg/debian/jlibs: ASCII text data/jaligner-1.0+dfsg/debian/manifest: ASCII text data/jaligner-1.0+dfsg/debian/manpages: ASCII text data/jaligner-1.0+dfsg/debian/patches/f267efdf3bc29291eddd380bba127b8ed56f2dc2.patch: unified diff output, ASCII text data/jaligner-1.0+dfsg/debian/patches/series: ASCII text data/jaligner-1.0+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/jaligner-1.0+dfsg/debian/salsa-ci.yml: ASCII text data/jaligner-1.0+dfsg/debian/source/format: ASCII text data/jaligner-1.0+dfsg/debian/source/include-binaries: ASCII text data/jaligner-1.0+dfsg/debian/tests/README.test_data: ASCII text data/jaligner-1.0+dfsg/debian/tests/control: ASCII text data/jaligner-1.0+dfsg/debian/tests/references.tar.xz: XZ compressed data data/jaligner-1.0+dfsg/debian/tests/run-unit-test: Bourne-Again shell script, ASCII text executable data/jaligner-1.0+dfsg/debian/upstream/metadata: ASCII text data/jaligner-1.0+dfsg/debian/watch: ASCII text data/jaligner-1.0+dfsg/.pc/.version: ASCII text data/jaligner-1.0+dfsg/.pc/.quilt_patches: ASCII text data/jaligner-1.0+dfsg/.pc/.quilt_series: ASCII text data/jaligner-1.0+dfsg/.pc/applied-patches: ASCII text data/jaligner-1.0+dfsg/.pc/f267efdf3bc29291eddd380bba127b8ed56f2dc2.patch/src/jaligner/NeedlemanWunschGotoh.java: Perl5 module source, ASCII text