data/indelible-1.03/src/paml.cpp: C++ source, ASCII text data/indelible-1.03/src/M5-13.cpp: C++ source, ASCII text data/indelible-1.03/src/MersenneTwister.h: C++ source, ASCII text data/indelible-1.03/src/README.txt: ASCII text data/indelible-1.03/src/randoms.cpp: C source, ISO-8859 text data/indelible-1.03/src/models.cpp: C++ source, ISO-8859 text, with very long lines data/indelible-1.03/src/indelible.cpp: C++ source, ASCII text, with very long lines data/indelible-1.03/src/control.cpp: C++ source, Non-ISO extended-ASCII text, with very long lines data/indelible-1.03/readme.txt: ASCII text data/indelible-1.03/help/manual_files/trees.txt: ASCII text, with very long lines data/indelible-1.03/help/manual_files/tree.shtml: HTML document, ASCII text, with very long lines data/indelible-1.03/help/manual_files/settings.shtml: HTML document, ASCII text data/indelible-1.03/help/manual_files/evolve.shtml: HTML document, ASCII text data/indelible-1.03/help/manual_files/symQmatrix.gif: GIF image data, version 89a, 278 x 136 data/indelible-1.03/help/manual_files/model.shtml: HTML document, ASCII text data/indelible-1.03/help/manual_files/branches.shtml: HTML document, ASCII text data/indelible-1.03/help/manual_files/codon_RATES.txt: ASCII text data/indelible-1.03/help/manual_files/nucleotide_RATES.txt: ASCII text data/indelible-1.03/help/manual_files/random_branch_length_trees.JPG: JPEG image data, JFIF standard 1.01, resolution (DPI), density 96x96, segment length 16, baseline, precision 8, 287x809, components 3 data/indelible-1.03/help/manual_files/mylengthmodel.txt: ASCII text data/indelible-1.03/help/manual_files/partitions.shtml: HTML document, ASCII text data/indelible-1.03/help/manual_files/userAAmodel.txt: ASCII text data/indelible-1.03/help/manual_files/type.shtml: exported SGML document, ASCII text data/indelible-1.03/help/examples.shtml: HTML document, ASCII text data/indelible-1.03/help/example_files/basicaminoacid.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/CODON.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/trees.txt: ASCII text, with very long lines data/indelible-1.03/help/example_files/branch.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/sitebranch.shtml: HTML document, ASCII text data/indelible-1.03/help/example_files/settings.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/basic.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/basiccodon.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/branch2.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/indels.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/nucleotide-branch.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/codon_RATES.txt: ASCII text data/indelible-1.03/help/example_files/nucleotide_RATES.txt: ASCII text data/indelible-1.03/help/example_files/CODONsites.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/AMINOACID.shtml: HTML document, ASCII text data/indelible-1.03/help/example_files/random_branch_length_trees.JPG: JPEG image data, JFIF standard 1.01, resolution (DPI), density 96x96, segment length 16, baseline, precision 8, 287x809, components 3 data/indelible-1.03/help/example_files/trees.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/multi-partitions.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/mylengthmodel.txt: ASCII text data/indelible-1.03/help/example_files/rates.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/basicnucleotide.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/NUCLEOTIDE.shtml: exported SGML document, ASCII text data/indelible-1.03/help/example_files/userAAmodel.txt: ASCII text data/indelible-1.03/help/manual.shtml: HTML document, ASCII text data/indelible-1.03/help/index.html: HTML document, ASCII text, with very long lines data/indelible-1.03/control.txt: ASCII text data/indelible-1.03/debian/README.test: UTF-8 Unicode text data/indelible-1.03/debian/changelog: UTF-8 Unicode text data/indelible-1.03/debian/control: UTF-8 Unicode text data/indelible-1.03/debian/copyright: UTF-8 Unicode text data/indelible-1.03/debian/doc-base: ASCII text data/indelible-1.03/debian/docs: ASCII text data/indelible-1.03/debian/examples: ASCII text, with no line terminators data/indelible-1.03/debian/get-orig-source: POSIX shell script, ASCII text executable data/indelible-1.03/debian/patches/0001-added-headers-for-getpid-2.patch: unified diff output, ASCII text data/indelible-1.03/debian/patches/0002-added-documentation-index-page.patch: unified diff output, ASCII text, with very long lines data/indelible-1.03/debian/patches/0003-added-manpage.patch: unified diff output, ASCII text, with very long lines data/indelible-1.03/debian/patches/0004-added-auto-tools-build-system.patch: unified diff output, ASCII text data/indelible-1.03/debian/patches/0005-remove-unnecessary-whitespace-from-the-end-of-sequen.patch: unified diff output, ASCII text data/indelible-1.03/debian/patches/0006-spelling.patch: unified diff output, ASCII text, with very long lines data/indelible-1.03/debian/patches/series: ASCII text data/indelible-1.03/debian/rules: a /usr/bin/make -f script, ASCII text executable data/indelible-1.03/debian/salsa-ci.yml: ASCII text data/indelible-1.03/debian/source/format: ASCII text data/indelible-1.03/debian/tests/control: ASCII text data/indelible-1.03/debian/tests/data/README.test-data: ASCII text, with no line terminators data/indelible-1.03/debian/tests/data/aminoacid/control.txt: ASCII text data/indelible-1.03/debian/tests/data/aminoacid/ref/J1out.fas: ASCII text data/indelible-1.03/debian/tests/data/aminoacid/ref/J1out_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/aminoacid/ref/J2out.fas: ASCII text, with very long lines data/indelible-1.03/debian/tests/data/aminoacid/ref/J2out_TRUE.phy: ASCII text, with very long lines data/indelible-1.03/debian/tests/data/aminoacid/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/aminoacid/ref/Uout.fas: ASCII text, with very long lines data/indelible-1.03/debian/tests/data/aminoacid/ref/Uout_TRUE.phy: ASCII text, with very long lines data/indelible-1.03/debian/tests/data/aminoacid/ref/WFout.fas: ASCII text data/indelible-1.03/debian/tests/data/aminoacid/ref/WFout_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/aminoacid/ref/Wout.fas: ASCII text, with very long lines data/indelible-1.03/debian/tests/data/aminoacid/ref/Wout_TRUE.phy: ASCII text, with very long lines data/indelible-1.03/debian/tests/data/aminoacid/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/aminoacid/userAAmodel.txt: ASCII text data/indelible-1.03/debian/tests/data/basicaminoacid/control.txt: ASCII text data/indelible-1.03/debian/tests/data/basicaminoacid/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/basicaminoacid/ref/outputname.fas: ASCII text data/indelible-1.03/debian/tests/data/basicaminoacid/ref/outputname_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/basicaminoacid/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/basiccodon/control.txt: ASCII text data/indelible-1.03/debian/tests/data/basiccodon/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/basiccodon/ref/outputname.fas: ASCII text data/indelible-1.03/debian/tests/data/basiccodon/ref/outputname_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/basiccodon/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/basicnucleotide/control.txt: ASCII text data/indelible-1.03/debian/tests/data/basicnucleotide/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/basicnucleotide/ref/outputname.fas: ASCII text data/indelible-1.03/debian/tests/data/basicnucleotide/ref/outputname_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/basicnucleotide/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/branch/control.txt: ASCII text data/indelible-1.03/debian/tests/data/branch/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/branch/ref/outputname.fas: ASCII text data/indelible-1.03/debian/tests/data/branch/ref/outputname_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/branch/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/branch2/control.txt: ASCII text data/indelible-1.03/debian/tests/data/branch2/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/branch2/ref/outputname.fas: ASCII text data/indelible-1.03/debian/tests/data/branch2/ref/outputname_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/branch2/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/codon/control.txt: ASCII text data/indelible-1.03/debian/tests/data/codon/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/codon/ref/out1.fas: ASCII text data/indelible-1.03/debian/tests/data/codon/ref/out1_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/codon/ref/out2.fas: ASCII text data/indelible-1.03/debian/tests/data/codon/ref/out2_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/codon/ref/out3.fas: ASCII text data/indelible-1.03/debian/tests/data/codon/ref/out3_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/codon/ref/out4.fas: ASCII text data/indelible-1.03/debian/tests/data/codon/ref/out4_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/codon/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/codonsites/control.txt: UTF-8 Unicode text data/indelible-1.03/debian/tests/data/codonsites/ref/LOG.txt: UTF-8 Unicode text data/indelible-1.03/debian/tests/data/codonsites/ref/out1.fas: ASCII text data/indelible-1.03/debian/tests/data/codonsites/ref/out1_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/codonsites/ref/out2.fas: ASCII text data/indelible-1.03/debian/tests/data/codonsites/ref/out2_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/codonsites/ref/out3.fas: ASCII text data/indelible-1.03/debian/tests/data/codonsites/ref/out3_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/codonsites/ref/out4.fas: ASCII text data/indelible-1.03/debian/tests/data/codonsites/ref/out4_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/codonsites/ref/out5.fas: ASCII text data/indelible-1.03/debian/tests/data/codonsites/ref/out5_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/codonsites/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/indels/control.txt: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/mylengthmodel.txt: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/outputname1.fas: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/outputname1_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/outputname2.fas: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/outputname2_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/outputname3.fas: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/outputname3_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/outputname4.fas: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/outputname4_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/indels/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/control.txt: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/ref/GTRout.fas: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/ref/GTRout_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/ref/HKYout.fas: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/ref/HKYout_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/ref/JCout.fas: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/ref/JCout_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/ref/K81out.fas: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/ref/K81out_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/nucleotide/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/nucleotide-branch/control.txt: ASCII text data/indelible-1.03/debian/tests/data/nucleotide-branch/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/nucleotide-branch/ref/outputname1.fas: ASCII text data/indelible-1.03/debian/tests/data/nucleotide-branch/ref/outputname1_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/nucleotide-branch/ref/outputname2.fas: ASCII text, with very long lines data/indelible-1.03/debian/tests/data/nucleotide-branch/ref/outputname2_TRUE.phy: ASCII text, with very long lines data/indelible-1.03/debian/tests/data/nucleotide-branch/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/rates/control.txt: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/outputname1.fas: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/outputname1_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/outputname2.fas: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/outputname2_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/outputname3.fas: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/outputname3_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/outputname4.fas: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/outputname4_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/outputname5.fas: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/outputname5_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/rates/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/settings/control.txt: ASCII text data/indelible-1.03/debian/tests/data/settings/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/settings/ref/filename.fas: ASCII text data/indelible-1.03/debian/tests/data/settings/ref/filename_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/settings/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/data/sitebranch/control.txt: ASCII text data/indelible-1.03/debian/tests/data/sitebranch/ref/LOG.txt: ASCII text data/indelible-1.03/debian/tests/data/sitebranch/ref/outputname.fas: ASCII text data/indelible-1.03/debian/tests/data/sitebranch/ref/outputname_TRUE.phy: ASCII text data/indelible-1.03/debian/tests/data/sitebranch/ref/trees.txt: ASCII text data/indelible-1.03/debian/tests/run-unit-test: Bourne-Again shell script, ASCII text executable data/indelible-1.03/debian/upstream/edam: ASCII text data/indelible-1.03/debian/upstream/metadata: ASCII text data/indelible-1.03/debian/watch: ASCII text data/indelible-1.03/.pc/.version: ASCII text data/indelible-1.03/.pc/.quilt_patches: ASCII text data/indelible-1.03/.pc/.quilt_series: ASCII text data/indelible-1.03/.pc/applied-patches: ASCII text data/indelible-1.03/.pc/0001-added-headers-for-getpid-2.patch/src/indelible.cpp: C++ source, ASCII text, with very long lines data/indelible-1.03/.pc/0002-added-documentation-index-page.patch/help/index.html: empty data/indelible-1.03/.pc/0003-added-manpage.patch/indelible.1: empty data/indelible-1.03/.pc/0004-added-auto-tools-build-system.patch/Makefile.am: empty data/indelible-1.03/.pc/0004-added-auto-tools-build-system.patch/configure.ac: empty data/indelible-1.03/.pc/0005-remove-unnecessary-whitespace-from-the-end-of-sequen.patch/src/indelible.cpp: C++ source, ASCII text, with very long lines data/indelible-1.03/.pc/0006-spelling.patch/src/control.cpp: C++ source, Non-ISO extended-ASCII text, with very long lines data/indelible-1.03/.pc/0006-spelling.patch/indelible.1: troff or preprocessor input, ASCII text, with very long lines data/indelible-1.03/Makefile.am: ASCII text data/indelible-1.03/configure.ac: ASCII text data/indelible-1.03/indelible.1: troff or preprocessor input, ASCII text, with very long lines