data/htslib-1.11/INSTALL: ASCII text data/htslib-1.11/LICENSE: ASCII text data/htslib-1.11/NEWS: UTF-8 Unicode text data/htslib-1.11/README: ASCII text data/htslib-1.11/README.large_positions.md: C source, ASCII text data/htslib-1.11/bcf_sr_sort.c: C source, ASCII text data/htslib-1.11/bcf_sr_sort.h: C source, ASCII text data/htslib-1.11/bgzf.c: C source, ASCII text data/htslib-1.11/bgzip.1: troff or preprocessor input, ASCII text data/htslib-1.11/bgzip.c: C source, ASCII text data/htslib-1.11/config.mk.in: makefile script, ASCII text data/htslib-1.11/cram/cram.h: C source, ASCII text data/htslib-1.11/cram/cram_codecs.c: C source, ASCII text data/htslib-1.11/cram/cram_codecs.h: C source, ASCII text data/htslib-1.11/cram/cram_encode.c: C source, ASCII text data/htslib-1.11/cram/cram_encode.h: C source, ASCII text data/htslib-1.11/cram/cram_external.c: C source, ASCII text data/htslib-1.11/cram/cram_index.c: C source, ASCII text data/htslib-1.11/cram/cram_index.h: C source, ASCII text data/htslib-1.11/cram/cram_io.c: C source, ASCII text data/htslib-1.11/cram/cram_io.h: C source, ASCII text data/htslib-1.11/cram/cram_samtools.c: C source, ASCII text data/htslib-1.11/cram/cram_samtools.h: C source, ASCII text data/htslib-1.11/cram/cram_stats.c: C source, ASCII text data/htslib-1.11/cram/cram_stats.h: C source, ASCII text data/htslib-1.11/cram/cram_structs.h: C source, ASCII text data/htslib-1.11/cram/mFILE.c: C source, ASCII text data/htslib-1.11/cram/mFILE.h: C source, ASCII text data/htslib-1.11/cram/misc.h: C source, ASCII text data/htslib-1.11/cram/open_trace_file.c: C source, ASCII text data/htslib-1.11/cram/open_trace_file.h: C source, ASCII text data/htslib-1.11/cram/pooled_alloc.c: C source, ASCII text data/htslib-1.11/cram/pooled_alloc.h: C source, ASCII text data/htslib-1.11/cram/rANS_byte.h: C source, ASCII text data/htslib-1.11/cram/rANS_static.c: C source, ASCII text data/htslib-1.11/cram/rANS_static.h: C source, ASCII text data/htslib-1.11/cram/string_alloc.c: C source, ASCII text data/htslib-1.11/cram/string_alloc.h: C source, ASCII text data/htslib-1.11/cram/os.h: C source, ASCII text data/htslib-1.11/cram/cram_decode.c: C source, ASCII text data/htslib-1.11/cram/cram_decode.h: C source, ASCII text data/htslib-1.11/errmod.c: C source, ASCII text data/htslib-1.11/faidx.5: troff or preprocessor input, ASCII text data/htslib-1.11/faidx.c: C source, ASCII text data/htslib-1.11/header.c: C source, ASCII text data/htslib-1.11/header.h: C source, ASCII text data/htslib-1.11/hfile.c: C source, ASCII text data/htslib-1.11/hfile_gcs.c: C source, ASCII text data/htslib-1.11/hfile_internal.h: C source, ASCII text data/htslib-1.11/hfile_libcurl.c: C source, ASCII text data/htslib-1.11/hfile_net.c: C source, ASCII text data/htslib-1.11/hfile_s3.c: C source, ASCII text data/htslib-1.11/hfile_s3_write.c: C source, ASCII text data/htslib-1.11/hts.c: C source, ASCII text data/htslib-1.11/hts_internal.h: C source, ASCII text data/htslib-1.11/hts_os.c: C source, ASCII text data/htslib-1.11/htsfile.1: troff or preprocessor input, ASCII text data/htslib-1.11/htsfile.c: C source, ASCII text data/htslib-1.11/htslib-s3-plugin.7: troff or preprocessor input, ASCII text data/htslib-1.11/htslib.mk: ASCII text data/htslib-1.11/htslib.pc.in: ASCII text data/htslib-1.11/htslib/bgzf.h: C source, ASCII text data/htslib-1.11/htslib/cram.h: C source, ASCII text data/htslib-1.11/htslib/faidx.h: C source, ASCII text data/htslib-1.11/htslib/hfile.h: C source, ASCII text data/htslib-1.11/htslib/hts.h: C source, ASCII text data/htslib-1.11/htslib/hts_defs.h: C source, ASCII text data/htslib-1.11/htslib/hts_endian.h: C source, ASCII text data/htslib-1.11/htslib/hts_log.h: C source, ASCII text data/htslib-1.11/htslib/hts_os.h: C source, ASCII text data/htslib-1.11/htslib/kbitset.h: C source, ASCII text data/htslib-1.11/htslib/kfunc.h: C source, ASCII text data/htslib-1.11/htslib/khash.h: C source, ASCII text data/htslib-1.11/htslib/khash_str2int.h: C source, ASCII text data/htslib-1.11/htslib/klist.h: C source, ASCII text data/htslib-1.11/htslib/knetfile.h: C source, ASCII text data/htslib-1.11/htslib/kroundup.h: C source, ASCII text data/htslib-1.11/htslib/kseq.h: C source, ASCII text data/htslib-1.11/htslib/ksort.h: C source, ASCII text data/htslib-1.11/htslib/kstring.h: C source, ASCII text data/htslib-1.11/htslib/regidx.h: C source, ASCII text data/htslib-1.11/htslib/sam.h: C source, ASCII text data/htslib-1.11/htslib/synced_bcf_reader.h: C source, ASCII text data/htslib-1.11/htslib/tbx.h: C source, ASCII text data/htslib-1.11/htslib/thread_pool.h: C source, ASCII text data/htslib-1.11/htslib/vcf.h: C source, ASCII text data/htslib-1.11/htslib/vcf_sweep.h: C source, ASCII text data/htslib-1.11/htslib/vcfutils.h: C source, ASCII text data/htslib-1.11/htslib_vars.mk: ASCII text data/htslib-1.11/kfunc.c: C source, ASCII text data/htslib-1.11/knetfile.c: C source, ASCII text data/htslib-1.11/kstring.c: C source, ASCII text data/htslib-1.11/m4/hts_hide_dynamic_syms.m4: M4 macro processor script, ASCII text data/htslib-1.11/m4/hts_prog_cc_warnings.m4: M4 macro processor script, ASCII text data/htslib-1.11/m4/pkg.m4: M4 macro processor script, UTF-8 Unicode text data/htslib-1.11/md5.c: C source, ASCII text data/htslib-1.11/multipart.c: C source, ASCII text data/htslib-1.11/os/lzma_stub.h: C source, ASCII text data/htslib-1.11/os/rand.c: C source, ASCII text data/htslib-1.11/probaln.c: C source, ASCII text data/htslib-1.11/realn.c: C source, ASCII text data/htslib-1.11/regidx.c: C source, ASCII text data/htslib-1.11/region.c: C source, ASCII text data/htslib-1.11/sam.5: troff or preprocessor input, ASCII text data/htslib-1.11/sam_internal.h: C source, ASCII text data/htslib-1.11/synced_bcf_reader.c: C source, ASCII text data/htslib-1.11/tabix.1: troff or preprocessor input, ASCII text data/htslib-1.11/tabix.c: C source, ASCII text data/htslib-1.11/tbx.c: C source, ASCII text data/htslib-1.11/test/auxf#values.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/htslib-1.11/test/auxf#values_java.cram: CRAM version 3.0 (identified as auxf#values.bam) data/htslib-1.11/test/auxf.fa: ASCII text data/htslib-1.11/test/auxf.fa.fai: ASCII text data/htslib-1.11/test/bcf-sr/merge.noidx.a.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/htslib-1.11/test/bcf-sr/merge.noidx.abc.expected.out: ASCII text data/htslib-1.11/test/bcf-sr/merge.noidx.b.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/htslib-1.11/test/bcf-sr/merge.noidx.c.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/htslib-1.11/test/bcf-sr/merge.noidx.hdr_order.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/htslib-1.11/test/bcf-sr/merge.noidx.rec_order.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/htslib-1.11/test/bgziptest.txt: ASCII text, with no line terminators data/htslib-1.11/test/bgziptest.txt.gz: Blocked GNU Zip Format (BGZF; gzip compatible), block length 28 data/htslib-1.11/test/bgziptest.txt.gz.gzi: Hitachi SH big-endian COFF object file, not stripped, 0 section, symbol offset=0x1d000000, optional header size 256 data/htslib-1.11/test/c1#bounds.sam: ASCII text data/htslib-1.11/test/c1#clip.sam: ASCII text data/htslib-1.11/test/c1#noseq.sam: Sequence Alignment/Map (SAM), ASCII text data/htslib-1.11/test/c1#pad1.sam: ASCII text data/htslib-1.11/test/c1#pad2.sam: ASCII text data/htslib-1.11/test/c1#pad3.sam: Sequence Alignment/Map (SAM), ASCII text data/htslib-1.11/test/c1#unknown.sam: Sequence Alignment/Map (SAM), ASCII text data/htslib-1.11/test/c1.fa: ASCII text data/htslib-1.11/test/c1.fa.fai: ASCII text data/htslib-1.11/test/c2#pad.sam: ASCII text data/htslib-1.11/test/c2.fa: ASCII text data/htslib-1.11/test/c2.fa.fai: ASCII text data/htslib-1.11/test/ce#1.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/htslib-1.11/test/ce#1000.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/htslib-1.11/test/ce#2.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/htslib-1.11/test/ce#5.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/htslib-1.11/test/ce#5b.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/htslib-1.11/test/ce#5b_java.cram: CRAM version 3.0 (identified as ce#5b.sam) data/htslib-1.11/test/ce#large_seq.sam: ASCII text, with very long lines data/htslib-1.11/test/ce#supp.sam: ASCII text data/htslib-1.11/test/ce#tag_depadded.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/htslib-1.11/test/ce#tag_padded.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/htslib-1.11/test/ce#unmap.sam: ASCII text data/htslib-1.11/test/ce#unmap1.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/htslib-1.11/test/ce#unmap2.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/htslib-1.11/test/ce.fa: ASCII text data/htslib-1.11/test/ce.fa.fai: ASCII text data/htslib-1.11/test/colons.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 115 data/htslib-1.11/test/colons.bam.bai: SAMtools BAI (BAM indexing format), with 6 reference sequences data/htslib-1.11/test/compare_sam.pl: Perl script text executable data/htslib-1.11/test/cross_validate.sh: POSIX shell script, ASCII text executable data/htslib-1.11/test/emptyfile: empty data/htslib-1.11/test/faidx.fa: ASCII text, with CRLF, LF line terminators data/htslib-1.11/test/fastqs.fq: ASCII text, with very long lines data/htslib-1.11/test/fastqs_README.txt: ASCII text data/htslib-1.11/test/fieldarith.c: C source, ASCII text data/htslib-1.11/test/fieldarith.sam: Sequence Alignment/Map (SAM), ASCII text data/htslib-1.11/test/formatcols.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/htslib-1.11/test/formatmissing-out.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/htslib-1.11/test/formatmissing.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/htslib-1.11/test/fuzz/hts_open_fuzzer.c: C source, ASCII text data/htslib-1.11/test/header_syms.pl: Perl script text executable data/htslib-1.11/test/hfile.c: C source, ASCII text data/htslib-1.11/test/hts_endian.c: C source, ASCII text data/htslib-1.11/test/index.bam.bai: SAMtools BAI (BAM indexing format), with 7 reference sequences data/htslib-1.11/test/index.bam.csi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 101 data/htslib-1.11/test/index.bcf.csi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 115 data/htslib-1.11/test/index.cram.crai: gzip compressed data, from Unix, original size modulo 2^32 100 data/htslib-1.11/test/index.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/index.sam.gz.bai: SAMtools BAI (BAM indexing format), with 7 reference sequences data/htslib-1.11/test/index.sam.gz.csi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 101 data/htslib-1.11/test/index.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/htslib-1.11/test/index.vcf.gz.csi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 130 data/htslib-1.11/test/index.vcf.gz.tbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 184 data/htslib-1.11/test/longrefs/index.expected1.vcf: CSV text data/htslib-1.11/test/longrefs/index.expected2.vcf: ASCII text data/htslib-1.11/test/longrefs/index.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/htslib-1.11/test/longrefs/longref.sam: ASCII text, with very long lines data/htslib-1.11/test/longrefs/longref_itr.expected.sam: ASCII text, with very long lines data/htslib-1.11/test/longrefs/longref_multi.expected.sam: ASCII text, with very long lines data/htslib-1.11/test/maintainer/check_copyright.pl: Perl script text executable data/htslib-1.11/test/maintainer/check_spaces.pl: Perl script text executable data/htslib-1.11/test/md#1.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/htslib-1.11/test/md.fa: ASCII text data/htslib-1.11/test/md.fa.fai: ASCII text data/htslib-1.11/test/mpileup/c1#pad1.out: ASCII text data/htslib-1.11/test/mpileup/c1#pad1.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/mpileup/c1#pad2.out: ASCII text data/htslib-1.11/test/mpileup/c1#pad2.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/mpileup/c1#pad3.out: ASCII text data/htslib-1.11/test/mpileup/c1#pad3.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/mpileup/mp_D.out: ASCII text data/htslib-1.11/test/mpileup/mp_D.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/mpileup/mp_DI.out: ASCII text data/htslib-1.11/test/mpileup/mp_DI.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/mpileup/mp_I.out: ASCII text data/htslib-1.11/test/mpileup/mp_I.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/mpileup/mp_ID.out: ASCII text data/htslib-1.11/test/mpileup/mp_ID.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/mpileup/mp_N.out: ASCII text data/htslib-1.11/test/mpileup/mp_N.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/mpileup/mp_N2.out: ASCII text data/htslib-1.11/test/mpileup/mp_N2.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/mpileup/mp_P.out: ASCII text data/htslib-1.11/test/mpileup/mp_P.sam: Sequence Alignment/Map (SAM), with header version 1.6 data/htslib-1.11/test/mpileup/mpileup.tst: ASCII text data/htslib-1.11/test/mpileup/small.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 114 data/htslib-1.11/test/mpileup/small.out: ASCII text data/htslib-1.11/test/mpileup/test-pileup.sh: POSIX shell script, ASCII text executable data/htslib-1.11/test/no_hdr_sq_1.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 1662 data/htslib-1.11/test/no_hdr_sq_1.bam.csi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 65 data/htslib-1.11/test/no_hdr_sq_1.expected.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/htslib-1.11/test/noroundtrip-out.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/htslib-1.11/test/noroundtrip.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/htslib-1.11/test/pileup.c: C source, ASCII text data/htslib-1.11/test/plugins-dlhts.c: C source, ASCII text data/htslib-1.11/test/range.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 502 data/htslib-1.11/test/range.bam.bai: SAMtools BAI (BAM indexing format), with 7 reference sequences data/htslib-1.11/test/range.cram: CRAM version 3.0 (identified as -) data/htslib-1.11/test/range.cram.crai: gzip compressed data, from Unix, original size modulo 2^32 150 data/htslib-1.11/test/range.out: Sequence Alignment/Map (SAM), with header version 1.4 data/htslib-1.11/test/realn01.fa: ASCII text data/htslib-1.11/test/realn01.fa.fai: ASCII text data/htslib-1.11/test/realn01.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/htslib-1.11/test/realn01_exp-a.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/htslib-1.11/test/realn01_exp-e.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/htslib-1.11/test/realn01_exp.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/htslib-1.11/test/realn02-r.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/htslib-1.11/test/realn02.fa: ASCII text data/htslib-1.11/test/realn02.fa.fai: ASCII text data/htslib-1.11/test/realn02.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/htslib-1.11/test/realn02_exp-a.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/htslib-1.11/test/realn02_exp-e.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/htslib-1.11/test/realn02_exp.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/htslib-1.11/test/sam.c: C source, ASCII text, with very long lines data/htslib-1.11/test/simple_test_driver.sh: POSIX shell script, ASCII text executable data/htslib-1.11/test/tabix.out: ASCII text data/htslib-1.11/test/tabix/bed_file.Y.100200.out: ASCII text data/htslib-1.11/test/tabix/bed_file.bed: ASCII text data/htslib-1.11/test/tabix/bed_file.separate.out: ASCII text data/htslib-1.11/test/tabix/gff_file.X.2934832.2935190.out: ASCII text data/htslib-1.11/test/tabix/gff_file.gff: ASCII text data/htslib-1.11/test/tabix/large_chr.20.1.2147483647.out: ASCII text data/htslib-1.11/test/tabix/large_chr.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/htslib-1.11/test/tabix/tabix.tst: ASCII text data/htslib-1.11/test/tabix/test-tabix.sh: POSIX shell script, ASCII text executable data/htslib-1.11/test/tabix/vcf_file.1.3000151.out: ASCII text data/htslib-1.11/test/tabix/vcf_file.2.3199812.out: ASCII text data/htslib-1.11/test/tabix/vcf_file.bcf: Blocked GNU Zip Format (BGZF; gzip compatible), block length 2690 data/htslib-1.11/test/tabix/vcf_file.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/htslib-1.11/test/test-bcf-sr.c: C source, ASCII text data/htslib-1.11/test/test-bcf-sr.pl: Perl script text executable data/htslib-1.11/test/test-bcf-translate.c: C source, ASCII text data/htslib-1.11/test/test-bcf-translate.out: Variant Call Format (VCF) version 4.2, ASCII text data/htslib-1.11/test/test-parse-reg.c: C source, ASCII text data/htslib-1.11/test/test-regidx.c: C source, ASCII text data/htslib-1.11/test/test-vcf-api.c: C source, ASCII text data/htslib-1.11/test/test-vcf-api.out: Variant Call Format (VCF) version 4.2, ASCII text data/htslib-1.11/test/test-vcf-hdr-in.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/htslib-1.11/test/test-vcf-hdr.out: Variant Call Format (VCF) version 4.1, ASCII text data/htslib-1.11/test/test-vcf-sweep.c: C source, ASCII text data/htslib-1.11/test/test-vcf-sweep.out: ASCII text data/htslib-1.11/test/test_bgzf.c: C source, ASCII text data/htslib-1.11/test/test_index.c: C source, ASCII text data/htslib-1.11/test/test_kfunc.c: C source, ASCII text data/htslib-1.11/test/test_kstring.c: C source, ASCII text data/htslib-1.11/test/test_realn.c: C source, ASCII text data/htslib-1.11/test/test_str2int.c: C source, ASCII text data/htslib-1.11/test/test_view.c: C source, ASCII text data/htslib-1.11/test/thrash_threads1.c: C source, ASCII text data/htslib-1.11/test/thrash_threads2.c: C source, ASCII text data/htslib-1.11/test/thrash_threads3.c: C source, ASCII text data/htslib-1.11/test/thrash_threads4.c: C source, ASCII text data/htslib-1.11/test/thrash_threads5.c: C source, ASCII text data/htslib-1.11/test/thrash_threads6.c: C source, ASCII text data/htslib-1.11/test/thrash_threads7.c: C source, ASCII text data/htslib-1.11/test/thread_pool.md: ASCII text, with very long lines data/htslib-1.11/test/with-shlib.sh: POSIX shell script, ASCII text executable data/htslib-1.11/test/xx#MD.sam: Sequence Alignment/Map (SAM), ASCII text data/htslib-1.11/test/xx#MD2.sam: Sequence Alignment/Map (SAM), ASCII text data/htslib-1.11/test/xx#blank.sam: ASCII text data/htslib-1.11/test/xx#large_aux.sam: Sequence Alignment/Map (SAM), ASCII text, with very long lines data/htslib-1.11/test/xx#large_aux2.sam: Sequence Alignment/Map (SAM), ASCII text data/htslib-1.11/test/xx#large_aux_java.cram: CRAM version 3.0 (identified as xx#large_aux.sam) data/htslib-1.11/test/xx#minimal.sam: ASCII text data/htslib-1.11/test/xx#pair.sam: ASCII text data/htslib-1.11/test/xx#repeated.sam: ASCII text data/htslib-1.11/test/xx#rg.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/htslib-1.11/test/xx#tlen.sam: ASCII text data/htslib-1.11/test/xx#tlen2.sam: ASCII text data/htslib-1.11/test/xx#triplet.sam: ASCII text data/htslib-1.11/test/xx#unsorted.sam: ASCII text data/htslib-1.11/test/xx.fa: ASCII text data/htslib-1.11/test/xx.fa.fai: ASCII text data/htslib-1.11/test/test-logging.pl: Perl script text executable data/htslib-1.11/test/test.pl: Perl script text executable data/htslib-1.11/textutils.c: C source, ASCII text data/htslib-1.11/textutils_internal.h: C source, ASCII text data/htslib-1.11/thread_pool.c: C source, ASCII text data/htslib-1.11/thread_pool_internal.h: C source, ASCII text data/htslib-1.11/vcf.5: troff or preprocessor input, ASCII text data/htslib-1.11/vcf.c: C source, ASCII text data/htslib-1.11/vcf_sweep.c: C source, ASCII text data/htslib-1.11/vcfutils.c: C source, ASCII text data/htslib-1.11/config.h.in: C source, ASCII text data/htslib-1.11/configure: POSIX shell script, ASCII text executable data/htslib-1.11/debian/README.test: UTF-8 Unicode text data/htslib-1.11/debian/changelog: UTF-8 Unicode text data/htslib-1.11/debian/control: UTF-8 Unicode text data/htslib-1.11/debian/copyright: UTF-8 Unicode text data/htslib-1.11/debian/htslib-test.install: ASCII text data/htslib-1.11/debian/htslib-test.lintian-overrides: ASCII text data/htslib-1.11/debian/i386-htslib.pc.in: ASCII text data/htslib-1.11/debian/libhts-dev.docs: ASCII text data/htslib-1.11/debian/libhts-dev.install: a /usr/bin/dh-exec script, ASCII text executable data/htslib-1.11/debian/libhts3.install: a /usr/bin/dh-exec script, ASCII text executable data/htslib-1.11/debian/libhts3.manpages: ASCII text data/htslib-1.11/debian/libhts3.symbols: ASCII text data/htslib-1.11/debian/patches/273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch: unified diff output, ASCII text data/htslib-1.11/debian/patches/big-endian: unified diff output, ASCII text data/htslib-1.11/debian/patches/cram_to_bam_export.patch: unified diff output, ASCII text data/htslib-1.11/debian/patches/define_PATH_MAX.patch: unified diff output, ASCII text data/htslib-1.11/debian/patches/fPIC.patch: unified diff output, ASCII text data/htslib-1.11/debian/patches/fix_float_precision: unified diff output, ASCII text data/htslib-1.11/debian/patches/no_git_version: unified diff output, ASCII text data/htslib-1.11/debian/patches/plugins_to_lib.patch: unified diff output, ASCII text data/htslib-1.11/debian/patches/series: ASCII text data/htslib-1.11/debian/patches/testShebang.patch: unified diff output, ASCII text data/htslib-1.11/debian/rules: a /usr/bin/make -f script, ASCII text executable data/htslib-1.11/debian/salsa-ci.yml: ASCII text data/htslib-1.11/debian/source/format: ASCII text data/htslib-1.11/debian/source/options: ASCII text data/htslib-1.11/debian/tabix.install: ASCII text data/htslib-1.11/debian/tabix.links: ASCII text data/htslib-1.11/debian/tabix.manpages: ASCII text data/htslib-1.11/debian/tests/control: ASCII text data/htslib-1.11/debian/tests/run-unit-test: Bourne-Again shell script, ASCII text executable data/htslib-1.11/debian/upstream/metadata: ASCII text data/htslib-1.11/debian/upstream/tabix.edam: ASCII text data/htslib-1.11/debian/watch: ASCII text data/htslib-1.11/.pc/.version: ASCII text data/htslib-1.11/.pc/.quilt_patches: ASCII text data/htslib-1.11/.pc/.quilt_series: ASCII text data/htslib-1.11/.pc/applied-patches: ASCII text data/htslib-1.11/.pc/no_git_version/version.sh: POSIX shell script, ASCII text executable data/htslib-1.11/.pc/define_PATH_MAX.patch/cram/os.h: C source, ASCII text data/htslib-1.11/.pc/fPIC.patch/Makefile: makefile script, ASCII text data/htslib-1.11/.pc/testShebang.patch/test/test-logging.pl: Perl script text executable data/htslib-1.11/.pc/testShebang.patch/test/test.pl: Perl script text executable data/htslib-1.11/.pc/fix_float_precision/sam.c: C source, ASCII text data/htslib-1.11/.pc/cram_to_bam_export.patch/cram/cram_decode.c: C source, ASCII text data/htslib-1.11/.pc/cram_to_bam_export.patch/cram/cram_decode.h: C source, ASCII text data/htslib-1.11/.pc/273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch/plugin.c: C source, ASCII text data/htslib-1.11/.pc/plugins_to_lib.patch/configure.ac: M4 macro processor script, ASCII text data/htslib-1.11/version.sh: POSIX shell script, ASCII text executable data/htslib-1.11/Makefile: makefile script, ASCII text data/htslib-1.11/sam.c: C source, ASCII text data/htslib-1.11/plugin.c: C source, ASCII text data/htslib-1.11/configure.ac: M4 macro processor script, ASCII text