data/cufflinks-2.2.1+dfsg.1/AUTHORS: ASCII text data/cufflinks-2.2.1+dfsg.1/LICENSE: ASCII text data/cufflinks-2.2.1+dfsg.1/Makefile.am: automake makefile script, ASCII text data/cufflinks-2.2.1+dfsg.1/README: Sequence Alignment/Map (SAM), ASCII text data/cufflinks-2.2.1+dfsg.1/autogen.sh: POSIX shell script, ASCII text executable data/cufflinks-2.2.1+dfsg.1/ax_boost_base.m4: M4 macro processor script, ASCII text, with very long lines data/cufflinks-2.2.1+dfsg.1/ax_boost_serialization.m4: M4 macro processor script, ASCII text data/cufflinks-2.2.1+dfsg.1/ax_boost_system.m4: M4 macro processor script, ASCII text data/cufflinks-2.2.1+dfsg.1/ax_boost_thread.m4: M4 macro processor script, ASCII text data/cufflinks-2.2.1+dfsg.1/ax_check_zlib.m4: M4 macro processor script, ASCII text data/cufflinks-2.2.1+dfsg.1/ax_openmp.m4: ASCII text data/cufflinks-2.2.1+dfsg.1/boost.m4: M4 macro processor script, ASCII text data/cufflinks-2.2.1+dfsg.1/make_bin.sh: Bourne-Again shell script, ASCII text executable data/cufflinks-2.2.1+dfsg.1/src/GArgs.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GArgs.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GBase.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GBase.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GFaSeqGet.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GFaSeqGet.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GFastaIndex.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GFastaIndex.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GList.hh: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GStr.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GStr.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GVec.hh: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/LICENSE: ASCII text data/cufflinks-2.2.1+dfsg.1/src/Makefile.am: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/assemble.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/assemble.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/biascorrection.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/bundles.cpp: C++ source, ASCII text, with very long lines data/cufflinks-2.2.1+dfsg.1/src/bundles.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/clustering.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/clustering.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/codons.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/codons.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/common.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/common.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/compress_gtf.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/cuffcluster.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/cuffcompare.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/cuffdiff.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/cuffdiff_to_gct.py: Python script, ASCII text executable data/cufflinks-2.2.1+dfsg.1/src/cufflinks.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/cuffnorm.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/cuffquant.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/differential.cpp: C++ source, ASCII text, with very long lines data/cufflinks-2.2.1+dfsg.1/src/differential.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/filters.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/filters.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gdna.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gdna.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/genes.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/genes.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gff.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gff.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gff_utils.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gff_utils.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gffread.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/graph_optimize.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/graph_optimize.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gtf_reads.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gtf_to_sam.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gtf_tracking.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/gtf_tracking.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/hits.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/jensen_shannon.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bfs.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bin_heap.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bipartite_matching.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/alteration_notifier.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/array_map.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/base_extender.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/debug_map.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/default_map.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/graph_adaptor_extender.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/graph_extender.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/invalid.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/map_extender.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/path_dump.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/traits.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/utility.h: C++ source, ISO-8859 text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/variant.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bits/vector_map.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/bucket_heap.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/concept_check.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/concepts/bpugraph.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/concepts/graph.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/concepts/graph_components.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/concepts/heap.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/concepts/maps.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/concepts/matrix_maps.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/concepts/path.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/concepts/ugraph.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/dfs.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/fib_heap.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/graph_adaptor.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/graph_utils.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/list_graph.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/maps.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/math.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/smart_graph.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/tolerance.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/topology.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/lemon/error.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/adap.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/ar_funs.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/band.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/c_args.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/c_plot.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/dens_haz.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/dens_int.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/dens_odi.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/density.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/design.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/dist.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/ev_atree.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/ev_interp.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/ev_kdtre.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/ev_main.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/ev_trian.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/family.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/fitted.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/frend.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/help.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/imatlb.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/lf_dercor.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/lf_fitfun.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/lf_robust.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/lf_vari.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/lfcons.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/lffuns.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/lfstr.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/lfstruc.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/lfwin.h: C source, ASCII text, with CRLF line terminators data/cufflinks-2.2.1+dfsg.1/src/locfit/linalg.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/local.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/locfit.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/m_chol.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/m_eigen.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/m_jacob.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/m_max.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/math.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/minmax.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/mutil.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/nbhd.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/pcomp.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/preplot.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/random.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/readfile.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/scb.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/scb_cons.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/simul.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/solve.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/strings.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/vari.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/vari.hpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/wdiag.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/weight.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/arith.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/lfd.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/cmd.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/pout.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/makecmd.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/locfit/startlf.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/matching_merge.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/matching_merge.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/multireads.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/multireads.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/negative_binomial_distribution.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/progressbar.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/replicates.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/replicates.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/rounding.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/sampling.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/scaffold_graph.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/scaffold_graph.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/scaffolds.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/scaffolds.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/tokenize.cpp: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/tokenize.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/tracking.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/tracking.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/transitive_closure.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/transitive_reduction.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/update_check.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/cuffmerge: Python script, ASCII text executable data/cufflinks-2.2.1+dfsg.1/src/biascorrection.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/GHash.hh: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/hits.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/abundances.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/jensen_shannon.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/sampling.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/src/abundances.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/version.m4: ASCII text data/cufflinks-2.2.1+dfsg.1/debian/README.Debian: ASCII text data/cufflinks-2.2.1+dfsg.1/debian/changelog: UTF-8 Unicode text data/cufflinks-2.2.1+dfsg.1/debian/control: ASCII text data/cufflinks-2.2.1+dfsg.1/debian/copyright: UTF-8 Unicode text data/cufflinks-2.2.1+dfsg.1/debian/docs: ASCII text data/cufflinks-2.2.1+dfsg.1/debian/gbp.conf: ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/0001-fix_spelling.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/0002-bam2samtools.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/0003-fix_includes_path.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/0004-fix-m64-usage-and-lfs.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/boost1.65.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/fix_gcc-6.1_issue_in_liblemon_code_copy.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/fix_gcc-7_ftbfs.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/format-security.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/gcc10.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/lib_eigen.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/py2to3.patch: unified diff output, ASCII text data/cufflinks-2.2.1+dfsg.1/debian/patches/series: ASCII text data/cufflinks-2.2.1+dfsg.1/debian/rules: a /usr/bin/make -f script, ASCII text executable data/cufflinks-2.2.1+dfsg.1/debian/salsa-ci.yml: ASCII text data/cufflinks-2.2.1+dfsg.1/debian/source/format: ASCII text data/cufflinks-2.2.1+dfsg.1/debian/upstream/metadata: ASCII text data/cufflinks-2.2.1+dfsg.1/debian/watch: ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/.version: ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/.quilt_patches: ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/.quilt_series: ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/applied-patches: ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/py2to3.patch/src/cuffmerge: Python script, ASCII text executable data/cufflinks-2.2.1+dfsg.1/.pc/boost1.65.patch/src/biascorrection.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/fix_gcc-7_ftbfs.patch/src/GHash.hh: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0004-fix-m64-usage-and-lfs.patch/configure.ac: makefile script, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0001-fix_spelling.patch/src/locfit/arith.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0001-fix_spelling.patch/src/locfit/lfd.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0001-fix_spelling.patch/src/locfit/cmd.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0001-fix_spelling.patch/src/locfit/pout.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0001-fix_spelling.patch/src/abundances.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0002-bam2samtools.patch/ax_bam.m4: M4 macro processor script, ASCII text, with very long lines data/cufflinks-2.2.1+dfsg.1/.pc/0003-fix_includes_path.patch/src/hits.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0003-fix_includes_path.patch/src/abundances.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0003-fix_includes_path.patch/src/abundances.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0003-fix_includes_path.patch/src/jensen_shannon.h: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0003-fix_includes_path.patch/src/sampling.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/0003-fix_includes_path.patch/ax_check_eigen.m4: M4 macro processor script, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/format-security.patch/src/locfit/makecmd.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/lib_eigen.patch/src/abundances.cpp: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/fix_gcc-6.1_issue_in_liblemon_code_copy.patch/src/lemon/error.h: C++ source, ASCII text data/cufflinks-2.2.1+dfsg.1/.pc/gcc10.patch/src/locfit/startlf.c: C source, ASCII text data/cufflinks-2.2.1+dfsg.1/configure.ac: makefile script, ASCII text data/cufflinks-2.2.1+dfsg.1/ax_bam.m4: M4 macro processor script, ASCII text, with very long lines data/cufflinks-2.2.1+dfsg.1/ax_check_eigen.m4: M4 macro processor script, ASCII text