data/bitseq-0.7.5+dfsg/ArgumentParser.cpp:                                C++ source, ASCII text
data/bitseq-0.7.5+dfsg/ArgumentParser.h:                                  C++ source, ASCII text
data/bitseq-0.7.5+dfsg/CollapsedSampler.cpp:                              C source, ASCII text
data/bitseq-0.7.5+dfsg/CollapsedSampler.h:                                C++ source, ASCII text
data/bitseq-0.7.5+dfsg/FileHeader.cpp:                                    C source, ASCII text
data/bitseq-0.7.5+dfsg/FileHeader.h:                                      C++ source, ASCII text
data/bitseq-0.7.5+dfsg/GibbsParameters.cpp:                               C++ source, ASCII text
data/bitseq-0.7.5+dfsg/GibbsParameters.h:                                 C++ source, ASCII text
data/bitseq-0.7.5+dfsg/GibbsSampler.cpp:                                  C source, ASCII text
data/bitseq-0.7.5+dfsg/GibbsSampler.h:                                    C++ source, ASCII text
data/bitseq-0.7.5+dfsg/MyTimer.cpp:                                       C source, ASCII text
data/bitseq-0.7.5+dfsg/MyTimer.h:                                         C++ source, ASCII text
data/bitseq-0.7.5+dfsg/PosteriorSamples.cpp:                              C++ source, ASCII text
data/bitseq-0.7.5+dfsg/PosteriorSamples.h:                                C++ source, ASCII text
data/bitseq-0.7.5+dfsg/README.md:                                         ASCII text
data/bitseq-0.7.5+dfsg/ReadDistribution.cpp:                              C++ source, ASCII text
data/bitseq-0.7.5+dfsg/ReadDistribution.h:                                C++ source, ASCII text
data/bitseq-0.7.5+dfsg/Sampler.cpp:                                       C source, ASCII text
data/bitseq-0.7.5+dfsg/Sampler.h:                                         C++ source, ASCII text
data/bitseq-0.7.5+dfsg/SimpleSparse.cpp:                                  C source, ASCII text
data/bitseq-0.7.5+dfsg/SimpleSparse.h:                                    C++ source, ASCII text
data/bitseq-0.7.5+dfsg/TagAlignments.cpp:                                 C source, ASCII text
data/bitseq-0.7.5+dfsg/TagAlignments.h:                                   C++ source, ASCII text
data/bitseq-0.7.5+dfsg/TranscriptExpression.cpp:                          C source, ASCII text
data/bitseq-0.7.5+dfsg/TranscriptExpression.h:                            C++ source, ASCII text
data/bitseq-0.7.5+dfsg/TranscriptInfo.cpp:                                C source, ASCII text
data/bitseq-0.7.5+dfsg/TranscriptInfo.h:                                  C++ source, ASCII text
data/bitseq-0.7.5+dfsg/TranscriptSequence.cpp:                            C source, ASCII text
data/bitseq-0.7.5+dfsg/TranscriptSequence.h:                              C++ source, ASCII text
data/bitseq-0.7.5+dfsg/VariationalBayes.cpp:                              C source, ASCII text
data/bitseq-0.7.5+dfsg/VariationalBayes.h:                                C++ source, ASCII text
data/bitseq-0.7.5+dfsg/_release_Makefile:                                 makefile script, ASCII text
data/bitseq-0.7.5+dfsg/asa103/LICENSE.txt:                                ASCII text
data/bitseq-0.7.5+dfsg/asa103/asa103.hpp:                                 ASCII text
data/bitseq-0.7.5+dfsg/biocUpdate.sh:                                     Bourne-Again shell script, ASCII text executable
data/bitseq-0.7.5+dfsg/changeList:                                        ASCII text
data/bitseq-0.7.5+dfsg/common.cpp:                                        C++ source, ASCII text
data/bitseq-0.7.5+dfsg/common.h:                                          C++ source, ASCII text
data/bitseq-0.7.5+dfsg/convertSamples.cpp:                                C++ source, ASCII text
data/bitseq-0.7.5+dfsg/estimateDE.cpp:                                    C++ source, ASCII text
data/bitseq-0.7.5+dfsg/estimateExpression.cpp:                            C source, ASCII text
data/bitseq-0.7.5+dfsg/estimateHyperPar.cpp:                              C++ source, ASCII text
data/bitseq-0.7.5+dfsg/estimateVBExpression.cpp:                          C source, ASCII text
data/bitseq-0.7.5+dfsg/extractSamples.cpp:                                C++ source, ASCII text
data/bitseq-0.7.5+dfsg/getGeneExpression.cpp:                             C++ source, ASCII text
data/bitseq-0.7.5+dfsg/getPPLR.cpp:                                       C++ source, ASCII text
data/bitseq-0.7.5+dfsg/getVariance.cpp:                                   C++ source, ASCII text
data/bitseq-0.7.5+dfsg/getWithinGeneExpression.cpp:                       C++ source, ASCII text
data/bitseq-0.7.5+dfsg/lowess.cpp:                                        C++ source, ASCII text
data/bitseq-0.7.5+dfsg/lowess.h:                                          C++ source, ASCII text
data/bitseq-0.7.5+dfsg/misc.cpp:                                          C++ source, ASCII text
data/bitseq-0.7.5+dfsg/misc.h:                                            C++ source, ASCII text
data/bitseq-0.7.5+dfsg/parameters1.txt:                                   ASCII text
data/bitseq-0.7.5+dfsg/parseAlignment.cpp:                                C++ source, ASCII text
data/bitseq-0.7.5+dfsg/releaseDo.sh:                                      Bourne-Again shell script, ASCII text executable
data/bitseq-0.7.5+dfsg/releaseList:                                       ASCII text
data/bitseq-0.7.5+dfsg/tagAlignment.h:                                    C++ source, ASCII text
data/bitseq-0.7.5+dfsg/transposeFiles.cpp:                                C++ source, ASCII text
data/bitseq-0.7.5+dfsg/transposeFiles.h:                                  ASCII text
data/bitseq-0.7.5+dfsg/transposeLargeFile.cpp:                            C source, ASCII text
data/bitseq-0.7.5+dfsg/debian/README.Debian:                              ASCII text
data/bitseq-0.7.5+dfsg/debian/changelog:                                  ASCII text
data/bitseq-0.7.5+dfsg/debian/control:                                    ASCII text
data/bitseq-0.7.5+dfsg/debian/copyright:                                  UTF-8 Unicode text
data/bitseq-0.7.5+dfsg/debian/patches/2to3.patch:                         unified diff output, ASCII text
data/bitseq-0.7.5+dfsg/debian/patches/fix_build_options.patch:            unified diff output, ASCII text
data/bitseq-0.7.5+dfsg/debian/patches/fix_clean_target.patch:             unified diff output, ASCII text
data/bitseq-0.7.5+dfsg/debian/patches/hardening.patch:                    unified diff output, ASCII text
data/bitseq-0.7.5+dfsg/debian/patches/link_against_system_samtools.patch: unified diff output, ASCII text
data/bitseq-0.7.5+dfsg/debian/patches/series:                             ASCII text
data/bitseq-0.7.5+dfsg/debian/patches/spelling.patch:                     unified diff output, ASCII text
data/bitseq-0.7.5+dfsg/debian/rules:                                      a /usr/bin/make -f script, ASCII text executable
data/bitseq-0.7.5+dfsg/debian/source/format:                              ASCII text
data/bitseq-0.7.5+dfsg/debian/upstream/metadata:                          ASCII text
data/bitseq-0.7.5+dfsg/debian/watch:                                      ASCII text
data/bitseq-0.7.5+dfsg/.pc/.version:                                      ASCII text
data/bitseq-0.7.5+dfsg/.pc/.quilt_patches:                                ASCII text
data/bitseq-0.7.5+dfsg/.pc/.quilt_series:                                 ASCII text
data/bitseq-0.7.5+dfsg/.pc/applied-patches:                               ASCII text
data/bitseq-0.7.5+dfsg/.pc/link_against_system_samtools.patch/Makefile:   makefile script, ASCII text
data/bitseq-0.7.5+dfsg/.pc/hardening.patch/Makefile:                      makefile script, ASCII text
data/bitseq-0.7.5+dfsg/.pc/fix_clean_target.patch/Makefile:               makefile script, ASCII text
data/bitseq-0.7.5+dfsg/.pc/spelling.patch/getFoldChange.cpp:              C++ source, ASCII text
data/bitseq-0.7.5+dfsg/.pc/fix_build_options.patch/Makefile:              makefile script, ASCII text
data/bitseq-0.7.5+dfsg/.pc/2to3.patch/checkTR.py:                         Python script, ASCII text executable
data/bitseq-0.7.5+dfsg/.pc/2to3.patch/extractTranscriptInfo.py:           Python script, ASCII text executable
data/bitseq-0.7.5+dfsg/.pc/2to3.patch/getCounts.py:                       Objective-C source, ASCII text
data/bitseq-0.7.5+dfsg/.pc/2to3.patch/parseAlignment.py:                  Python script, ASCII text executable
data/bitseq-0.7.5+dfsg/getFoldChange.cpp:                                 C++ source, ASCII text
data/bitseq-0.7.5+dfsg/Makefile:                                          makefile script, ASCII text
data/bitseq-0.7.5+dfsg/checkTR.py:                                        Python script, ASCII text executable
data/bitseq-0.7.5+dfsg/extractTranscriptInfo.py:                          Python script, ASCII text executable
data/bitseq-0.7.5+dfsg/getCounts.py:                                      Objective-C source, ASCII text
data/bitseq-0.7.5+dfsg/parseAlignment.py:                                 Python script, ASCII text executable