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ASCII text data/bcftools-1.11/test/csq/ENST00000557788/ENST00000557788.fa.fai: ASCII text data/bcftools-1.11/test/csq/ENST00000557788/ENST00000557788.gff: ASCII text data/bcftools-1.11/test/csq/ENST00000557788/ascii-art.txt: ASCII text data/bcftools-1.11/test/csq/ENST00000557788/long-overlap-del.txt: ASCII text data/bcftools-1.11/test/csq/ENST00000557788/long-overlap-del.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/csq/ENST00000573314/ENST00000573314.fa: ASCII text data/bcftools-1.11/test/csq/ENST00000573314/ENST00000573314.fa.fai: ASCII text data/bcftools-1.11/test/csq/ENST00000573314/ENST00000573314.gff: ASCII text data/bcftools-1.11/test/csq/ENST00000573314/ascii-art.txt: ASCII text data/bcftools-1.11/test/csq/ENST00000573314/ascii-art.txt-l: ASCII text data/bcftools-1.11/test/csq/ENST00000573314/incorrect-insertion-overlap.txt: ASCII text data/bcftools-1.11/test/csq/ENST00000573314/incorrect-insertion-overlap.txt-l: ASCII text data/bcftools-1.11/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/csq/ENST00000593942/ENST00000593942.fa: ASCII text data/bcftools-1.11/test/csq/ENST00000593942/ENST00000593942.fa.fai: ASCII text data/bcftools-1.11/test/csq/ENST00000593942/ENST00000593942.gff: ASCII text data/bcftools-1.11/test/csq/ENST00000593942/last-codon-deletion.txt: ASCII text data/bcftools-1.11/test/csq/ENST00000593942/last-codon-deletion.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/csq/ENST00000624631/ENST00000624631.fa: ASCII text data/bcftools-1.11/test/csq/ENST00000624631/ENST00000624631.fa.fai: ASCII text data/bcftools-1.11/test/csq/ENST00000624631/ENST00000624631.gff: ASCII text data/bcftools-1.11/test/csq/ENST00000624631/ambiguous.txt: ASCII text data/bcftools-1.11/test/csq/ENST00000624631/ambiguous.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/csq/ENST00000624631/ascii-art.txt: ASCII text data/bcftools-1.11/test/csq/make-csq-test: Perl script text executable data/bcftools-1.11/test/csq/make-csq-test-by-region: Perl script text executable data/bcftools-1.11/test/csq/sort-csq: Perl script text executable data/bcftools-1.11/test/dosage.1.out: ASCII text data/bcftools-1.11/test/dosage.2.out: ASCII text data/bcftools-1.11/test/dosage.3.out: ASCII text data/bcftools-1.11/test/dosage.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/empty.idx.out: empty data/bcftools-1.11/test/empty.idx_count.out: ASCII text data/bcftools-1.11/test/empty.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/ex1.gtf.gz: Blocked GNU Zip Format (BGZF; gzip compatible), block length 2939 data/bcftools-1.11/test/ex2.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/ex3.sam: Sequence Alignment/Map (SAM), ASCII text data/bcftools-1.11/test/fill-AN-AC.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/fill-tags-AN0.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fill-tags-AN0.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fill-tags-hemi.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fill-tags-hemi.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fill-tags-hemi.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fill-tags-hwe.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fill-tags-hwe.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fill-tags.2.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/fill-tags.3.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/fill-tags.3.smpl: ASCII text data/bcftools-1.11/test/fill-tags.4.out: Variant Call Format (VCF) version 4.1, ASCII text, with very long lines data/bcftools-1.11/test/fill-tags.5.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/fill-tags.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/filter-missing-floats.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.1.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/filter.1.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/filter.10.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/filter.10.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/filter.11.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/filter.11.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/filter.12.out: ASCII text data/bcftools-1.11/test/filter.13.out: ASCII text data/bcftools-1.11/test/filter.14.out: ASCII text data/bcftools-1.11/test/filter.15.out: ASCII text data/bcftools-1.11/test/filter.16.out: ASCII text data/bcftools-1.11/test/filter.17.out: ASCII text data/bcftools-1.11/test/filter.18.out: ASCII text data/bcftools-1.11/test/filter.19.out: ASCII text data/bcftools-1.11/test/filter.2.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/filter.2.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/filter.20.out: CSV text data/bcftools-1.11/test/filter.21.out: ASCII text data/bcftools-1.11/test/filter.22.out: ASCII text data/bcftools-1.11/test/filter.23.out: CSV text data/bcftools-1.11/test/filter.24.out: ASCII text data/bcftools-1.11/test/filter.25.out: ASCII text data/bcftools-1.11/test/filter.26.out: ASCII text data/bcftools-1.11/test/filter.27.out: ASCII text data/bcftools-1.11/test/filter.28.out: ASCII text data/bcftools-1.11/test/filter.29.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/filter.3.out: ASCII text data/bcftools-1.11/test/filter.3.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/filter.30.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.31.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.32.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.33.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.34.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.35.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.36.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.37.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.38.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/filter.39.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/filter.4.out: ASCII text data/bcftools-1.11/test/filter.4.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/filter.5.out: ASCII text data/bcftools-1.11/test/filter.5.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.6.out: ASCII text data/bcftools-1.11/test/filter.6.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.7.out: ASCII text data/bcftools-1.11/test/filter.7.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/filter.8.out: ASCII text data/bcftools-1.11/test/filter.8.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/filter.9.out: ASCII text data/bcftools-1.11/test/filter.9.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fixploidy.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/fixploidy.ploidy: ASCII text data/bcftools-1.11/test/fixploidy.samples: ASCII text data/bcftools-1.11/test/fixploidy.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/fixref.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fixref.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fixref.2a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fixref.2b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fixref.3.fa: ASCII text data/bcftools-1.11/test/fixref.3.fa.fai: ASCII text data/bcftools-1.11/test/fixref.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fixref.3.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fixref.4.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fixref.5.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/fixref.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/gtcheck.1.gts.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/gtcheck.1.out: ASCII text data/bcftools-1.11/test/gtcheck.1.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/gtcheck.10.out: ASCII text data/bcftools-1.11/test/gtcheck.11.out: ASCII text data/bcftools-1.11/test/gtcheck.12.out: ASCII text data/bcftools-1.11/test/gtcheck.2.out: ASCII text data/bcftools-1.11/test/gtcheck.2.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/gtcheck.3.out: ASCII text data/bcftools-1.11/test/gtcheck.3.pairs: ASCII text data/bcftools-1.11/test/gtcheck.3.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/gtcheck.4.out: ASCII text data/bcftools-1.11/test/gtcheck.4.pairs: ASCII text data/bcftools-1.11/test/gtcheck.4.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/gtcheck.5.out: ASCII text data/bcftools-1.11/test/gtcheck.6.out: ASCII text data/bcftools-1.11/test/gtcheck.7.out: ASCII text data/bcftools-1.11/test/gtcheck.8.out: ASCII text data/bcftools-1.11/test/gtcheck.9.out: ASCII text data/bcftools-1.11/test/guess-ploidy.GL.out: ASCII text data/bcftools-1.11/test/guess-ploidy.PL.out: ASCII text data/bcftools-1.11/test/gvcf.fa: ASCII text data/bcftools-1.11/test/gvcf.fa.fai: ASCII text data/bcftools-1.11/test/gvcf.merge.1.out: Variant Call Format (VCF) version 4.1, ASCII text, with very long lines data/bcftools-1.11/test/gvcf.merge.1.vcf: Variant Call Format (VCF) version 4.1, ASCII text, with very long lines data/bcftools-1.11/test/gvcf.merge.2.vcf: Variant Call Format (VCF) version 4.1, ASCII text, with very long lines data/bcftools-1.11/test/gvcf.merge.3.vcf: Variant Call Format (VCF) version 4.1, ASCII text, with very long lines data/bcftools-1.11/test/gvcfz.1.out: ASCII text data/bcftools-1.11/test/gvcfz.2.1.out: ASCII text data/bcftools-1.11/test/gvcfz.2.out: ASCII text data/bcftools-1.11/test/gvcfz.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/gvcfz.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/idx.1.out: ASCII text data/bcftools-1.11/test/idx.1.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/idx.2.bed: ASCII text data/bcftools-1.11/test/idx.2.out: ASCII text data/bcftools-1.11/test/idx.2.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/idx.3.bed: Blocked GNU Zip Format (BGZF; gzip compatible), block length 75 data/bcftools-1.11/test/idx.3.out: ASCII text data/bcftools-1.11/test/idx.3.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/idx.4.bed: ASCII text data/bcftools-1.11/test/idx.4.out: ASCII text data/bcftools-1.11/test/idx.4.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/idx.out: ASCII text data/bcftools-1.11/test/idx.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/idx_count.out: ASCII text data/bcftools-1.11/test/indel-stats.1.out: ASCII text data/bcftools-1.11/test/indel-stats.2.out: ASCII text data/bcftools-1.11/test/indel-stats.3.out: ASCII text data/bcftools-1.11/test/indel-stats.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/isec-miss.1.1.out: ASCII text data/bcftools-1.11/test/isec-miss.1.1.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/isec-miss.1.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/isec-miss.1.3.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/isec-miss.1.regs.txt: ASCII text data/bcftools-1.11/test/isec-miss.2.1.out: ASCII text data/bcftools-1.11/test/isec-miss.2.1.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/isec-miss.2.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/isec-miss.2.3.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/isec.a.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/isec.ab.C.out: ASCII text data/bcftools-1.11/test/isec.ab.any.out: ASCII text data/bcftools-1.11/test/isec.ab.both.out: ASCII text data/bcftools-1.11/test/isec.ab.flt.out: ASCII text data/bcftools-1.11/test/isec.ab.out: ASCII text data/bcftools-1.11/test/isec.b.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/isec.tab: ASCII text data/bcftools-1.11/test/isec.tab.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/large_chrom.20.1.2147483647.out: ASCII text data/bcftools-1.11/test/large_chrom_csi_limit.20.1.2147483647.out: ASCII text data/bcftools-1.11/test/large_chrom_csi_limit.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/many-alts.vcf: Variant Call Format (VCF) version 4.1, ASCII text, with very long lines data/bcftools-1.11/test/many.alleles.trim.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/many.alleles.vcf: Variant Call Format (VCF) version 4.1, ASCII text, with very long lines data/bcftools-1.11/test/mendelian.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mendelian.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mendelian.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mendelian.4.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mendelian.5.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mendelian.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.2.a.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.2.all.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.2.b.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.2.both.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.2.none.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.3.a.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.3.b.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.3.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.4.a.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.4.b.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.4.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.5.a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.5.b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.5.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.6.a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.6.b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.6.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.7.a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.7.b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.9.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.LPL.1.out: Variant Call Format (VCF) version 4.3, ASCII text, with very long lines data/bcftools-1.11/test/merge.LPL.2.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.LPL.3.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.LPL.4.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.LPL.5.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.LPL.6.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.LPL.a.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.LPL.b.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.LPL.c.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.a.chk: ASCII text data/bcftools-1.11/test/merge.a.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.abc.2.out: Variant Call Format (VCF) version 4.1, ASCII text, with very long lines data/bcftools-1.11/test/merge.abc.3.out: Variant Call Format (VCF) version 4.1, ASCII text, with very long lines data/bcftools-1.11/test/merge.abc.out: Variant Call Format (VCF) version 4.1, ASCII text, with very long lines data/bcftools-1.11/test/merge.b.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.c.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.gvcf.10.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.10.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.10.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.10.4.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.10.5.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.10.a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.10.b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.10.fa: ASCII text data/bcftools-1.11/test/merge.gvcf.10.fa.fai: ASCII text data/bcftools-1.11/test/merge.gvcf.10.ref: ASCII text data/bcftools-1.11/test/merge.gvcf.2.a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.2.b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.2.c.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.3.a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.3.b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.4.a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.4.b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.4.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.7.a.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.gvcf.7.b.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.gvcf.7.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.gvcf.8.a.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.gvcf.8.b.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.gvcf.8.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/merge.gvcf.9.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.9.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.9.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.9.4.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.9a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.9b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.9c.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.9d.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.gvcf.9e.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.join.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.join.a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.join.b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/merge.noidx.a.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.noidx.abc.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.noidx.b.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/merge.noidx.c.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/missing.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/missing2ref.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/mpileup.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.2.samples: ASCII text data/bcftools-1.11/test/mpileup.2.tab: CSV text data/bcftools-1.11/test/mpileup.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.3.samples: ASCII text data/bcftools-1.11/test/mpileup.3.tab: CSV text data/bcftools-1.11/test/mpileup.3.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.4.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.4.samples: ASCII text data/bcftools-1.11/test/mpileup.4.tab: CSV text data/bcftools-1.11/test/mpileup.4.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.5.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.5.samples: ASCII text data/bcftools-1.11/test/mpileup.5.tab: CSV text data/bcftools-1.11/test/mpileup.5.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.6.tab: CSV text data/bcftools-1.11/test/mpileup.7.tab: CSV text data/bcftools-1.11/test/mpileup.NA19213.NA19129.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.X.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.X.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.X.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.c.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.c.X.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.c.X.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.c.X.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.c.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.cAls.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.cAls.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.cAls.4.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.cAls.5.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.cAls.6.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.cAls.7.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.cAls.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.cals.1.tab: ASCII text data/bcftools-1.11/test/mpileup.cals.1.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/mpileup.cals.2.tab: CSV text data/bcftools-1.11/test/mpileup.cals.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.cals.8.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.cals.9.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.hwe.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup.hwe.2.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/mpileup.hwe.3.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/mpileup.hwe.4.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/mpileup.hwe.samples: ASCII text data/bcftools-1.11/test/mpileup.hwe.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/mpileup.ped: ASCII text data/bcftools-1.11/test/mpileup.ploidy: ASCII text data/bcftools-1.11/test/mpileup.samples: ASCII text data/bcftools-1.11/test/mpileup.tab: ASCII text data/bcftools-1.11/test/mpileup.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/indel-AD.1.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 111 data/bcftools-1.11/test/mpileup/indel-AD.1.cram: CRAM version 3.0 (identified as test/mpileup/indel-A\027\001) data/bcftools-1.11/test/mpileup/indel-AD.1.fa: ASCII text data/bcftools-1.11/test/mpileup/indel-AD.1.fa.fai: ASCII text data/bcftools-1.11/test/mpileup/indel-AD.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/indel-AD.1.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/bcftools-1.11/test/mpileup/mpileup-SCR.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 112 data/bcftools-1.11/test/mpileup/mpileup-SCR.cram: CRAM version 3.0 (identified as test/mpileup/mpileup\036\001) data/bcftools-1.11/test/mpileup/mpileup-SCR.fa: ASCII text data/bcftools-1.11/test/mpileup/mpileup-SCR.fa.fai: ASCII text data/bcftools-1.11/test/mpileup/mpileup-SCR.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/mpileup.1.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 2824 data/bcftools-1.11/test/mpileup/mpileup.1.bam.bai: SAMtools BAI (BAM indexing format), with 1 reference sequences data/bcftools-1.11/test/mpileup/mpileup.1.cram: CRAM version 3.0 (identified as -) data/bcftools-1.11/test/mpileup/mpileup.1.cram.crai: gzip compressed data, from Unix, truncated data/bcftools-1.11/test/mpileup/mpileup.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/mpileup.1.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/bcftools-1.11/test/mpileup/mpileup.10.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/mpileup.11.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/mpileup.2.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 1082 data/bcftools-1.11/test/mpileup/mpileup.2.bam.bai: SAMtools BAI (BAM indexing format), with 1 reference sequences data/bcftools-1.11/test/mpileup/mpileup.2.cram: CRAM version 3.0 (identified as -) data/bcftools-1.11/test/mpileup/mpileup.2.cram.crai: gzip compressed data, from Unix, truncated data/bcftools-1.11/test/mpileup/mpileup.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/mpileup.2.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/bcftools-1.11/test/mpileup/mpileup.3.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 1082 data/bcftools-1.11/test/mpileup/mpileup.3.bam.bai: SAMtools BAI (BAM indexing format), with 1 reference sequences data/bcftools-1.11/test/mpileup/mpileup.3.cram: CRAM version 3.0 (identified as -) data/bcftools-1.11/test/mpileup/mpileup.3.cram.crai: gzip compressed data, from Unix, truncated data/bcftools-1.11/test/mpileup/mpileup.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/mpileup.3.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/bcftools-1.11/test/mpileup/mpileup.4.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 215 data/bcftools-1.11/test/mpileup/mpileup.4.cram: CRAM version 2.1 (identified as test/mpileup/mpileup,() data/bcftools-1.11/test/mpileup/mpileup.4.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/mpileup/mpileup.4.sam: Sequence Alignment/Map (SAM), with header version 1.0 data/bcftools-1.11/test/mpileup/mpileup.5.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/mpileup/mpileup.6.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/mpileup.7.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/mpileup.8.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/mpileup.9.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/mpileup/mpileup.ref.fa: ASCII text data/bcftools-1.11/test/mpileup/mpileup.ref.fa.fai: ASCII text data/bcftools-1.11/test/mplp.10.samples: ASCII text data/bcftools-1.11/test/mplp.11.rgs: ASCII text data/bcftools-1.11/test/mplp.9.samples: ASCII text data/bcftools-1.11/test/mplp.samples: ASCII text data/bcftools-1.11/test/norm.2.fa: ASCII text data/bcftools-1.11/test/norm.2.fa.fai: ASCII text data/bcftools-1.11/test/norm.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.3.fa: ASCII text data/bcftools-1.11/test/norm.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.3.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.fa: ASCII text data/bcftools-1.11/test/norm.fa.fai: ASCII text data/bcftools-1.11/test/norm.iupac.fa: ASCII text data/bcftools-1.11/test/norm.iupac.fa.fai: ASCII text data/bcftools-1.11/test/norm.iupac.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.iupac.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.merge.2.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/norm.merge.2.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/norm.merge.3.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/norm.merge.3.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/norm.merge.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/norm.merge.strict.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/norm.merge.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/norm.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/norm.rmdup.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.rmdup.2.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.rmdup.2.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.rmdup.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.rmdup.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.rmdup.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.rmdup.4.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.rmdup.5.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.rmdup.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.setref.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.setref.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.split.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.split.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.split.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.split.3.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/norm.split.4.1.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/norm.split.4.2.out: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/norm.split.4.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/norm.split.and.norm.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/norm.split.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/norm.split.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/norm.telomere.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.telomere.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/norm.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/parental-origin.1.out: ASCII text data/bcftools-1.11/test/parental-origin.2.out: ASCII text data/bcftools-1.11/test/parental-origin.3.out: ASCII text data/bcftools-1.11/test/parental-origin.4.out: ASCII text data/bcftools-1.11/test/parental-origin.5.out: ASCII text data/bcftools-1.11/test/parental-origin.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/perl-flt.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/plugin-missing2ref.out.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/plugin-missing2ref.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/plugin1.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/prune.1.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/prune.1.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/prune.1.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/prune.1.4.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/prune.1.5.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/prune.1.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/prune.2.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/prune.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/query.10.out: ASCII text data/bcftools-1.11/test/query.11.out: ASCII text data/bcftools-1.11/test/query.12.out: ASCII text data/bcftools-1.11/test/query.13.out: ASCII text data/bcftools-1.11/test/query.14.out: ASCII text data/bcftools-1.11/test/query.15.out: ASCII text data/bcftools-1.11/test/query.16.out: ASCII text data/bcftools-1.11/test/query.17.out: ASCII text data/bcftools-1.11/test/query.18.out: ASCII text data/bcftools-1.11/test/query.19.out: ASCII text data/bcftools-1.11/test/query.2.out: ASCII text data/bcftools-1.11/test/query.2.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/query.20.out: ASCII text data/bcftools-1.11/test/query.21.out: ASCII text data/bcftools-1.11/test/query.22.out: ASCII text data/bcftools-1.11/test/query.23.out: ASCII text data/bcftools-1.11/test/query.24.out: ASCII text data/bcftools-1.11/test/query.25.out: ASCII text data/bcftools-1.11/test/query.26.out: ASCII text data/bcftools-1.11/test/query.27.out: ASCII text data/bcftools-1.11/test/query.28.out: ASCII text data/bcftools-1.11/test/query.29.out: ASCII text data/bcftools-1.11/test/query.3.out: ASCII text data/bcftools-1.11/test/query.30.out: ASCII text data/bcftools-1.11/test/query.31.out: ASCII text data/bcftools-1.11/test/query.32.out: ASCII text data/bcftools-1.11/test/query.33.out: ASCII text data/bcftools-1.11/test/query.34.out: ASCII text data/bcftools-1.11/test/query.35.out: ASCII text data/bcftools-1.11/test/query.36.out: ASCII text data/bcftools-1.11/test/query.37.out: ASCII text data/bcftools-1.11/test/query.38.out: ASCII text data/bcftools-1.11/test/query.39.out: ASCII text data/bcftools-1.11/test/query.4.out: ASCII text data/bcftools-1.11/test/query.40.out: ASCII text data/bcftools-1.11/test/query.41.out: ASCII text data/bcftools-1.11/test/query.42.out: ASCII text data/bcftools-1.11/test/query.43.out: ASCII text data/bcftools-1.11/test/query.44.out: ASCII text data/bcftools-1.11/test/query.45.out: ASCII text data/bcftools-1.11/test/query.46.out: ASCII text data/bcftools-1.11/test/query.47.out: ASCII text data/bcftools-1.11/test/query.48.out: ASCII text data/bcftools-1.11/test/query.49.out: ASCII text data/bcftools-1.11/test/query.5.out: ASCII text data/bcftools-1.11/test/query.50.out: ASCII text data/bcftools-1.11/test/query.51.out: ASCII text data/bcftools-1.11/test/query.52.out: ASCII text data/bcftools-1.11/test/query.53.out: ASCII text data/bcftools-1.11/test/query.54.out: ASCII text data/bcftools-1.11/test/query.55.out: CSV text data/bcftools-1.11/test/query.56.out: ASCII text data/bcftools-1.11/test/query.57.out: CSV text data/bcftools-1.11/test/query.58.out: CSV text data/bcftools-1.11/test/query.59.out: CSV text data/bcftools-1.11/test/query.6.out: CSV text data/bcftools-1.11/test/query.60.out: ASCII text data/bcftools-1.11/test/query.61.out: ASCII text data/bcftools-1.11/test/query.62.out: CSV text data/bcftools-1.11/test/query.63.out: ASCII text data/bcftools-1.11/test/query.64.out: ASCII text data/bcftools-1.11/test/query.65.out: CSV text data/bcftools-1.11/test/query.66.out: ASCII text data/bcftools-1.11/test/query.67.out: ASCII text data/bcftools-1.11/test/query.68.out: ASCII text data/bcftools-1.11/test/query.69.out: ASCII text data/bcftools-1.11/test/query.7.out: ASCII text data/bcftools-1.11/test/query.70.out: ASCII text data/bcftools-1.11/test/query.71.out: ASCII text data/bcftools-1.11/test/query.72.out: ASCII text data/bcftools-1.11/test/query.73.out: ASCII text data/bcftools-1.11/test/query.74.out: ASCII text data/bcftools-1.11/test/query.75.out: ASCII text data/bcftools-1.11/test/query.76.out: ASCII text data/bcftools-1.11/test/query.77.out: ASCII text data/bcftools-1.11/test/query.78.out: ASCII text data/bcftools-1.11/test/query.79.out: ASCII text data/bcftools-1.11/test/query.8.out: ASCII text data/bcftools-1.11/test/query.9.out: ASCII text data/bcftools-1.11/test/query.add-variantkey.vcf: Variant Call Format (VCF) version 4.0, ASCII text, with very long lines data/bcftools-1.11/test/query.allele-length.tsv: ASCII text data/bcftools-1.11/test/query.filter-type.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/query.filter.10.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/query.filter.2.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/query.filter.3.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/query.filter.4.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/query.filter.5.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/query.filter.6.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/query.filter.7.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/query.filter.8.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/query.filter.9.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/query.filter.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/query.negative.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/query.nucleotide.vcf: Variant Call Format (VCF) version 4.0, ASCII text, with very long lines data/bcftools-1.11/test/query.out: ASCII text data/bcftools-1.11/test/query.pbinom.1.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/query.string.1.out: ASCII text data/bcftools-1.11/test/query.string.2.out: ASCII text data/bcftools-1.11/test/query.string.vcf: Variant Call Format (VCF) version 4.3, ASCII text data/bcftools-1.11/test/query.variantkey.hex.out: ASCII text data/bcftools-1.11/test/query.variantkey.vcf: Variant Call Format (VCF) version 4.0, ASCII text, with very long lines data/bcftools-1.11/test/query.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/ref.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/ref.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/regions.out: ASCII text data/bcftools-1.11/test/regions.tab: ASCII text data/bcftools-1.11/test/regions.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/reheader.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/reheader.1.out.bcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/reheader.2.hdr: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/reheader.2.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/reheader.2.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/reheader.3.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/reheader.4.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/reheader.5.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/reheader.empty.hdr: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/reheader.empty.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/reheader.fai: ASCII text data/bcftools-1.11/test/reheader.hdr: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/reheader.samples: ASCII text data/bcftools-1.11/test/reheader.samples2: ASCII text data/bcftools-1.11/test/reheader.samples3: ASCII text data/bcftools-1.11/test/reheader.samples4: ASCII text data/bcftools-1.11/test/reheader.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/remove-overlaps.1.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/remove-overlaps.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/remove-overlaps.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/roh.1.1.out: ASCII text data/bcftools-1.11/test/roh.1.2.out: ASCII text data/bcftools-1.11/test/roh.1.3.out: ASCII text data/bcftools-1.11/test/roh.1.4.out: ASCII text data/bcftools-1.11/test/roh.1.tab.gz: Blocked GNU Zip Format (BGZF; gzip compatible), block length 15277 data/bcftools-1.11/test/roh.1.tab.gz.tbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 6843 data/bcftools-1.11/test/roh.1.vcf.gz: Blocked GNU Zip Format (BGZF; gzip compatible), block length 10922 data/bcftools-1.11/test/roh.1.vcf.gz.csi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 8819 data/bcftools-1.11/test/scatter.1.1.out: ASCII text data/bcftools-1.11/test/scatter.1.2.out: ASCII text data/bcftools-1.11/test/scatter.1.3.out: ASCII text data/bcftools-1.11/test/scatter.1.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/setGT.1.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/setGT.2.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/setGT.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/setGT.3.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/setGT.samples.txt: ASCII text data/bcftools-1.11/test/setGT.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/smpl-stats.1.out: ASCII text data/bcftools-1.11/test/sort.out: ASCII text data/bcftools-1.11/test/sort.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/split-vep.1.out: ASCII text data/bcftools-1.11/test/split-vep.10.out: ASCII text data/bcftools-1.11/test/split-vep.11.out: ASCII text, with very long lines data/bcftools-1.11/test/split-vep.12.out: ASCII text, with very long lines data/bcftools-1.11/test/split-vep.13.out: ASCII text data/bcftools-1.11/test/split-vep.14.out: ASCII text data/bcftools-1.11/test/split-vep.15.out: ASCII text data/bcftools-1.11/test/split-vep.16.out: ASCII text data/bcftools-1.11/test/split-vep.17.out: ASCII text data/bcftools-1.11/test/split-vep.18.out: ASCII text, with very long lines data/bcftools-1.11/test/split-vep.19.out: ASCII text, with very long lines data/bcftools-1.11/test/split-vep.2.out: ASCII text data/bcftools-1.11/test/split-vep.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/split-vep.3.out: ASCII text data/bcftools-1.11/test/split-vep.3.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/split-vep.4.out: ASCII text data/bcftools-1.11/test/split-vep.4.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/split-vep.5.out: ASCII text data/bcftools-1.11/test/split-vep.5.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/split-vep.6.out: ASCII text data/bcftools-1.11/test/split-vep.6.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/split-vep.7.out: ASCII text data/bcftools-1.11/test/split-vep.8.out: ASCII text data/bcftools-1.11/test/split-vep.9.out: ASCII text data/bcftools-1.11/test/split-vep.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/split.1.1.out: ASCII text data/bcftools-1.11/test/split.1.2.out: ASCII text data/bcftools-1.11/test/split.1.3.out: ASCII text data/bcftools-1.11/test/split.1.4.out: ASCII text data/bcftools-1.11/test/split.1.5.out: ASCII text data/bcftools-1.11/test/split.1.7.out: ASCII text data/bcftools-1.11/test/split.1.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/split.grp.1.1.txt: ASCII text data/bcftools-1.11/test/split.smpl.1.2.txt: ASCII text data/bcftools-1.11/test/split.smpl.1.3.txt: ASCII text data/bcftools-1.11/test/split.smpl.1.4.txt: ASCII text data/bcftools-1.11/test/stats.B.chk: ASCII text data/bcftools-1.11/test/stats.a.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/stats.b.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/stats.chk: ASCII text data/bcftools-1.11/test/stats.counts.chk: ASCII text data/bcftools-1.11/test/stats.counts.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/tabix.1.3000151.out: ASCII text data/bcftools-1.11/test/tabix.2.3199812.out: ASCII text data/bcftools-1.11/test/test-rbuf.c: C source, ASCII text data/bcftools-1.11/test/test-regidx.c: C source, ASCII text data/bcftools-1.11/test/trio-dnm.1.out: ASCII text data/bcftools-1.11/test/trio-dnm.1.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/trio-dnm.2.out: ASCII text data/bcftools-1.11/test/trio-dnm.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/trio-stats.2.out: ASCII text data/bcftools-1.11/test/trio-stats.2.ped: ASCII text data/bcftools-1.11/test/trio-stats.out: ASCII text data/bcftools-1.11/test/trio-stats.ped: ASCII text data/bcftools-1.11/test/trio-stats.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/trio.out: ASCII text data/bcftools-1.11/test/trio.ped: ASCII text data/bcftools-1.11/test/trio.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/variantkey-hex.out: ASCII text data/bcftools-1.11/test/vcf2sex.out: ASCII text data/bcftools-1.11/test/vcf2sex.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.1.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.10.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.2.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.3.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.4.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.5.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.6.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.7.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.8.out: ASCII text data/bcftools-1.11/test/view.9.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.GL.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.GP.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.GT.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.GTisec.H.out: ASCII text data/bcftools-1.11/test/view.GTisec.Hm.out: ASCII text data/bcftools-1.11/test/view.GTisec.Hmv.out: ASCII text data/bcftools-1.11/test/view.GTisec.Hv.out: ASCII text data/bcftools-1.11/test/view.GTisec.m.out: ASCII text data/bcftools-1.11/test/view.GTisec.mv.out: ASCII text data/bcftools-1.11/test/view.GTisec.out: ASCII text data/bcftools-1.11/test/view.GTisec.v.out: ASCII text data/bcftools-1.11/test/view.GTsubset.NA1.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.GTsubset.NA1NA2.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.GTsubset.NA1NA2NA3.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.PL.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.chrs.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.chrs.tab: ASCII text data/bcftools-1.11/test/view.chrs.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.dropgenotypes.noheader.out: ASCII text data/bcftools-1.11/test/view.dropgenotypes.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.exclude.out: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.filter.1.out: ASCII text, with very long lines data/bcftools-1.11/test/view.filter.10.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/view.filter.11.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/view.filter.12.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.filter.2.out: ASCII text, with very long lines data/bcftools-1.11/test/view.filter.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.filter.3.out: ASCII text, with very long lines data/bcftools-1.11/test/view.filter.4.out: ASCII text, with very long lines data/bcftools-1.11/test/view.filter.5.out: ASCII text, with very long lines data/bcftools-1.11/test/view.filter.6.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/view.filter.7.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/view.filter.8.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/view.filter.9.out: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/view.filter.annovar.1.out: ASCII text, with very long lines data/bcftools-1.11/test/view.filter.annovar.2.out: ASCII text, with very long lines data/bcftools-1.11/test/view.filter.annovar.3.out: ASCII text, with very long lines data/bcftools-1.11/test/view.filter.annovar.vcf: Variant Call Format (VCF) version 4.0, ASCII text, with very long lines data/bcftools-1.11/test/view.filter.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/view.minmaxac.1.out: ASCII text data/bcftools-1.11/test/view.minmaxac.2.out: ASCII text data/bcftools-1.11/test/view.minmaxac.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.omitgenotypes.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.omitgenotypes.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.vcf: Variant Call Format (VCF) version 4.1, ASCII text data/bcftools-1.11/test/view.vectors.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.vectors.A.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.vectors.B.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.vectors.C.out: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view.vectors.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/bcftools-1.11/test/view64bit.1.out: ASCII text data/bcftools-1.11/test/view64bit.1.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view64bit.2.out: ASCII text data/bcftools-1.11/test/view64bit.2.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view64bit.3.out: ASCII text data/bcftools-1.11/test/view64bit.3.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view64bit.4.out: ASCII text data/bcftools-1.11/test/view64bit.4.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/view64bit.5.out: ASCII text data/bcftools-1.11/test/view64bit.5.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/bcftools-1.11/test/test.pl: Perl script text executable data/bcftools-1.11/tsv2vcf.c: C source, ASCII text data/bcftools-1.11/tsv2vcf.h: C source, ASCII text data/bcftools-1.11/variantkey.h: C source, ASCII text data/bcftools-1.11/vcfannotate.c: C source, ASCII text data/bcftools-1.11/vcfbuf.c: C source, ASCII text data/bcftools-1.11/vcfbuf.h: C source, ASCII text data/bcftools-1.11/vcfcall.c: C source, ASCII text data/bcftools-1.11/vcfcnv.c: C source, ASCII text data/bcftools-1.11/vcfconcat.c: C source, ASCII text data/bcftools-1.11/vcfconvert.c: C source, ASCII text data/bcftools-1.11/vcffilter.c: C source, ASCII text data/bcftools-1.11/vcfgtcheck.c: C source, ASCII text data/bcftools-1.11/vcfindex.c: C source, ASCII text data/bcftools-1.11/vcfisec.c: C source, ASCII text data/bcftools-1.11/vcfmerge.c: C source, ASCII text data/bcftools-1.11/vcfnorm.c: C source, ASCII text data/bcftools-1.11/vcfplugin.c: C source, ASCII text data/bcftools-1.11/vcfquery.c: C source, ASCII text data/bcftools-1.11/vcfroh.c: C source, ASCII text data/bcftools-1.11/vcfsom.c: C source, ASCII text data/bcftools-1.11/vcfsort.c: C source, ASCII text data/bcftools-1.11/vcfstats.c: C source, ASCII text, with very long lines data/bcftools-1.11/vcfview.c: C source, ASCII text data/bcftools-1.11/vcmp.c: C source, ASCII text data/bcftools-1.11/vcmp.h: C source, ASCII text data/bcftools-1.11/version.c: C source, ASCII text data/bcftools-1.11/version.sh: POSIX shell script, ASCII text executable data/bcftools-1.11/debian/changelog: ASCII text data/bcftools-1.11/debian/clean: ASCII text data/bcftools-1.11/debian/control: ASCII text data/bcftools-1.11/debian/copyright: ASCII text data/bcftools-1.11/debian/docs: ASCII text data/bcftools-1.11/debian/man/color-chrs.pl.1: troff or preprocessor input, ASCII text data/bcftools-1.11/debian/man/plot-vcfstats.1: troff or preprocessor input, ASCII text data/bcftools-1.11/debian/man/vcfutils.pl.1: troff or preprocessor input, ASCII text data/bcftools-1.11/debian/manpages: ASCII text data/bcftools-1.11/debian/patches/2to3.patch: unified diff output, ASCII text data/bcftools-1.11/debian/patches/series: ASCII text data/bcftools-1.11/debian/patches/skip_new_test_failing_on_32bit.patch: unified diff output, ASCII text data/bcftools-1.11/debian/patches/tests-pluginpath.patch: unified diff output, ASCII text data/bcftools-1.11/debian/rules: a /usr/bin/make -f script, ASCII text executable data/bcftools-1.11/debian/salsa-ci.yml: ASCII text data/bcftools-1.11/debian/source/format: ASCII text data/bcftools-1.11/debian/tests/control: ASCII text data/bcftools-1.11/debian/upstream/metadata: ASCII text data/bcftools-1.11/debian/watch: ASCII text data/bcftools-1.11/.pc/.version: ASCII text data/bcftools-1.11/.pc/.quilt_patches: ASCII text data/bcftools-1.11/.pc/.quilt_series: ASCII text data/bcftools-1.11/.pc/applied-patches: ASCII text data/bcftools-1.11/.pc/tests-pluginpath.patch/test/test.pl: Perl script text executable data/bcftools-1.11/.pc/skip_new_test_failing_on_32bit.patch/test/test.pl: Perl script text executable data/bcftools-1.11/.pc/2to3.patch/misc/guess-ploidy.py: Python script, ASCII text executable