data/dnapi-1.1/README.md:23: defail ==> detail
data/dnapi-1.1/README.md:50: parametes ==> parameters
data/dnapi-1.1/dnapilib/exhaust.py:68: retrun ==> return
data/dnapi-1.1/dnapilib/kmer.py:1: proceses ==> processes
data/dnapi-1.1/examples/README.md:2: direcotry ==> directory
data/dnapi-1.1/examples/good.fq:1552: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:3460: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:7916: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:12020: AADD ==> ADD
data/dnapi-1.1/examples/good.fq:12424: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:16072: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:16524: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:19956: DED ==> DEAD
data/dnapi-1.1/examples/good.fq:20464: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:20752: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:21300: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:22296: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:24328: CAHE ==> CACHE
data/dnapi-1.1/examples/good.fq:24952: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:25764: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:25880: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:28572: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:28600: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:29828: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:31800: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:33880: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:34096: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:36288: EDE ==> EDGE
data/dnapi-1.1/examples/good.fq:37128: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:39668: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:40996: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:41148: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:44688: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:46892: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:47664: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:47832: HGE ==> HE
data/dnapi-1.1/examples/good.fq:48028: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:48628: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:50636: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:51924: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:53636: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:54600: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:55420: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:55420: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:57016: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:57492: DED ==> DEAD
data/dnapi-1.1/examples/good.fq:59432: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:59996: HGE ==> HE
data/dnapi-1.1/examples/good.fq:60792: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:62932: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:65116: CCHE ==> CACHE
data/dnapi-1.1/examples/good.fq:65256: CCHE ==> CACHE
data/dnapi-1.1/examples/good.fq:68076: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:69824: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:70624: AADD ==> ADD
data/dnapi-1.1/examples/good.fq:75260: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:75580: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:81548: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:84588: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:85612: EDE ==> EDGE
data/dnapi-1.1/examples/good.fq:85804: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:88032: AADD ==> ADD
data/dnapi-1.1/examples/good.fq:88048: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:88404: HAA ==> HAS
data/dnapi-1.1/examples/good.fq:89932: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:91348: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:91432: EDE ==> EDGE
data/dnapi-1.1/examples/good.fq:92392: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:92620: DED ==> DEAD
data/dnapi-1.1/examples/good.fq:94708: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:97592: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:97960: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:97992: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:104136: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:107160: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:111780: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:112636: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:113084: EDE ==> EDGE
data/dnapi-1.1/examples/good.fq:116560: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:117124: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:117852: CACH ==> CATCH, CACHE
data/dnapi-1.1/examples/good.fq:119000: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:121056: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:122032: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:128252: EDE ==> EDGE
data/dnapi-1.1/examples/good.fq:128944: CCHE ==> CACHE
data/dnapi-1.1/examples/good.fq:129280: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:131060: DED ==> DEAD
data/dnapi-1.1/examples/good.fq:131808: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:133876: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:136792: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:136800: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:141900: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:143944: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:144992: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:145564: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:145640: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:146500: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:151356: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:154452: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:159344: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:160860: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:164800: AADD ==> ADD
data/dnapi-1.1/examples/good.fq:168700: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:170476: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:171100: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:176056: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:176144: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:176548: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:178012: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:178796: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:190404: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:193596: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:196000: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:198084: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:199700: EGDE ==> EDGE
data/dnapi-1.1/examples/good.fq:200300: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:205064: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:211372: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:214396: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:214684: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:220588: ADDDED ==> ADDED
data/dnapi-1.1/examples/good.fq:221488: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:225660: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:226208: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:228768: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:230900: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:231864: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:233020: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:236504: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:236968: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:237432: DED ==> DEAD
data/dnapi-1.1/examples/good.fq:241496: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:242176: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:246052: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:247096: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:249408: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:249852: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:250736: AADD ==> ADD
data/dnapi-1.1/examples/good.fq:251512: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:255292: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:256308: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:258584: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:261796: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:263528: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:268020: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:268616: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:270256: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:271304: CHEC ==> CHECK
data/dnapi-1.1/examples/good.fq:273852: DED ==> DEAD
data/dnapi-1.1/examples/good.fq:275220: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:278208: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:279652: DED ==> DEAD
data/dnapi-1.1/examples/good.fq:279928: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:281076: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:282840: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:282860: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:285132: EDE ==> EDGE
data/dnapi-1.1/examples/good.fq:285848: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:286848: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:290452: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:291984: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:292140: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:292388: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:294028: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:298268: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:298316: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:299256: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:299600: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:300252: DED ==> DEAD
data/dnapi-1.1/examples/good.fq:301128: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:301172: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:302764: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:304312: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:304768: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:305100: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:308504: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:310644: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:316388: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:317844: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:318000: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:318828: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:319228: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:319432: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:320668: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:324560: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:325088: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:325456: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:326420: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:330692: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:331924: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:332116: HDA ==> HAD
data/dnapi-1.1/examples/good.fq:332828: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:333868: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:337184: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:339088: DED ==> DEAD
data/dnapi-1.1/examples/good.fq:339584: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:339800: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:340476: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:342348: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:345428: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:347180: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:347712: DED ==> DEAD
data/dnapi-1.1/examples/good.fq:350940: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:351872: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:357328: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:357664: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:359320: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:360948: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:361448: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:362244: AFE ==> SAFE
data/dnapi-1.1/examples/good.fq:363372: DAA ==> DATA
data/dnapi-1.1/examples/good.fq:367964: CAHC ==> CACHE
data/dnapi-1.1/examples/good.fq:369472: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:371104: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:372468: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:373508: EGE ==> EDGE
data/dnapi-1.1/examples/good.fq:373608: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:380492: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:384696: ADDD ==> ADD
data/dnapi-1.1/examples/good.fq:386508: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:388892: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:392956: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:394148: EDE ==> EDGE
data/dnapi-1.1/examples/good.fq:394428: BA ==> BY, BE
data/dnapi-1.1/examples/good.fq:394928: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:24: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:28: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:40: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:48: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:68: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:88: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:108: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:208: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:212: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:220: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:256: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:280: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:296: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:316: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:424: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:572: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:632: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:648: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:780: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:788: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:836: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:844: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:964: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:968: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:976: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1000: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1144: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1152: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1228: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1236: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1320: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1344: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1360: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1376: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1416: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1428: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1508: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1544: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1564: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1584: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1600: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1684: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1748: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1824: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1944: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:1996: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2008: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2020: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2056: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2156: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2160: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2264: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2320: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2336: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2372: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2464: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2468: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2528: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2556: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2580: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2604: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2624: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2664: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2680: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2708: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2712: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2732: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2740: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2780: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2820: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2824: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2828: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2832: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2832: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2844: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:2848: BA ==> BY, BE
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data/dnapi-1.1/examples/poor.fq:394900: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:394944: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395068: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395080: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395088: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395100: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395108: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395156: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395196: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395228: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395288: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395304: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395316: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395360: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395360: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395452: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395512: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395644: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395676: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395716: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395748: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395752: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395812: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395832: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395884: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395896: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395908: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395920: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395920: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:395984: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396024: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396048: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396084: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396116: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396128: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396128: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396176: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396228: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396260: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396268: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396284: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396324: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396376: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396392: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396444: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396444: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396488: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396580: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396584: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396688: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396740: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396744: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396792: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396812: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396852: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396860: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396860: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396872: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396892: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396896: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396928: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396948: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396948: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396968: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:396972: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397020: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397040: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397044: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397056: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397064: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397092: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397168: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397176: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397184: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397188: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397236: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397292: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397300: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397344: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397424: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397444: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397476: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397524: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397544: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397560: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397568: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397680: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397732: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397780: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397876: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397904: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397944: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:397956: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398028: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398040: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398120: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398128: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398160: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398216: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398256: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398268: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398292: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398340: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398384: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398388: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398412: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398440: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398520: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398528: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398544: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398560: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398604: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398620: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398652: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398660: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398692: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398764: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398796: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398804: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398832: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398840: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398848: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398904: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398948: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398980: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:398996: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399088: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399092: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399092: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399136: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399232: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399268: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399276: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399352: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399388: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399412: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399448: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399456: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399508: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399564: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399612: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399616: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399636: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399688: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399700: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399700: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399728: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399732: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399748: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399840: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399844: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399868: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399920: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399936: BA ==> BY, BE
data/dnapi-1.1/examples/poor.fq:399980: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:2012: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:2688: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:3312: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:4132: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:5264: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:5300: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:5488: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:5928: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:6120: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:6672: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:7176: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:7688: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:7944: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:8028: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:8084: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:8912: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:9808: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:10512: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:12016: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:12828: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:13296: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:16224: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:18224: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:20036: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:20344: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:20404: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:20416: AADD ==> ADD
data/dnapi-1.1/examples/processed.fq:20608: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:20608: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:20644: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:21232: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:21232: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:21512: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:21884: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:22376: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:22596: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:25564: HGE ==> HE
data/dnapi-1.1/examples/processed.fq:26100: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:26196: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:26196: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:26296: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:26316: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:27144: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:28360: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:28372: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:32288: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:32344: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:32700: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:33044: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:33972: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:34184: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:34196: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:34432: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:34764: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:34912: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:35960: EACF ==> EACH
data/dnapi-1.1/examples/processed.fq:36800: HGE ==> HE
data/dnapi-1.1/examples/processed.fq:38148: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:38828: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:39024: DED ==> DEAD
data/dnapi-1.1/examples/processed.fq:39992: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:40300: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:40436: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:41576: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:41676: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:42324: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:42516: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:43644: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:44348: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:44500: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:46476: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:49168: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:49204: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:52420: AADD ==> ADD
data/dnapi-1.1/examples/processed.fq:55172: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:55456: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:56460: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:57460: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:58036: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:59372: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:60188: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:60300: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:61000: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:61872: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:63348: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:65900: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:66688: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:69852: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:70328: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:70936: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:71732: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:72672: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:72792: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:72868: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:73256: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:73700: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:75212: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:76488: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:76676: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:76732: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:77040: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:77108: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:79032: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:79032: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:79244: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:79280: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:80432: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:80984: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:81020: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:81548: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:81812: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:81956: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:82216: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:82452: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:82772: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:83336: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:83392: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:84092: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:86268: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:89732: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:90052: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:92580: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:93652: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:93740: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:94116: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:95332: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:96132: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:97280: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:97460: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:98300: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:98988: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:99076: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:99088: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:100380: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:101124: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:101708: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:101992: HAA ==> HAS
data/dnapi-1.1/examples/processed.fq:102076: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:102524: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:103668: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:103712: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:104220: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:104784: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:105564: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:105732: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:106740: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:106776: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:107372: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:107508: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:108180: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:108384: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:108620: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:110204: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:110468: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:112040: AADD ==> ADD
data/dnapi-1.1/examples/processed.fq:112484: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:112524: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:113456: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:114588: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:117624: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:117720: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:117888: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:118004: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:119804: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:121560: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:121596: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:122696: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:124452: EACG ==> EACH
data/dnapi-1.1/examples/processed.fq:124484: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:125480: DED ==> DEAD
data/dnapi-1.1/examples/processed.fq:125556: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:128260: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:131260: HAA ==> HAS
data/dnapi-1.1/examples/processed.fq:135216: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:135696: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:138120: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:141248: AADD ==> ADD
data/dnapi-1.1/examples/processed.fq:145536: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:147968: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:150152: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:151044: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:151464: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:151532: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:153208: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:153916: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:154368: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:154396: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:154628: DED ==> DEAD
data/dnapi-1.1/examples/processed.fq:154836: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:155284: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:155288: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:155508: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:157324: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:158204: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:159372: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:160340: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:160872: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:162104: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:162380: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:163052: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:163248: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:163532: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:167052: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:167208: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:167504: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:167844: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:170668: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:174336: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:174836: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:176012: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:177668: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:177820: AADD ==> ADD
data/dnapi-1.1/examples/processed.fq:178516: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:178664: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:179244: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:179700: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:179936: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:182056: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:182936: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:185128: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:185388: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:185432: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:191760: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:192328: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:195580: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:197212: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:197584: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:200436: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:200948: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:201204: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:204396: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:205044: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:205184: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:205404: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:206616: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:206624: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:212740: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:213808: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:214108: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:215076: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:215616: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:216412: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:219748: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:220632: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:221104: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:222072: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:222636: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:222688: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:223428: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:223920: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:224228: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:224572: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:225784: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:225892: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:226056: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:226604: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:226788: AADD ==> ADD
data/dnapi-1.1/examples/processed.fq:229084: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:229684: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:230704: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:231328: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:232676: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:233232: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:233248: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:233272: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:233316: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:233824: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:233848: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:236728: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:238456: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:239020: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:241716: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:244192: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:244384: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:246620: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:247028: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:247196: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:248692: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:249716: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:251080: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:251420: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:256512: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:256768: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:258400: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:258696: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:259488: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:263172: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:263480: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:263744: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:264584: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:264760: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:267336: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:270840: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:272588: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:273072: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:273804: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:273976: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:274864: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:277804: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:277968: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:281808: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:282284: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:283288: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:283680: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:283760: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:287204: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:287928: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:289020: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:289916: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:289980: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:291176: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:291228: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:293232: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:293560: CACE ==> CACHE
data/dnapi-1.1/examples/processed.fq:293740: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:294484: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:294544: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:295404: EACG ==> EACH
data/dnapi-1.1/examples/processed.fq:295548: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:295724: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:296344: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:298716: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:299444: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:300836: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:301732: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:302128: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:302436: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:303080: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:303924: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:304016: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:306788: HGE ==> HE
data/dnapi-1.1/examples/processed.fq:306908: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:308696: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:309224: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:309972: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:310564: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:311192: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:311260: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:312536: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:312576: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:312880: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:313452: AADD ==> ADD
data/dnapi-1.1/examples/processed.fq:314340: CACH ==> CATCH, CACHE
data/dnapi-1.1/examples/processed.fq:314636: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:316392: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:316612: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:316880: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:317112: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:318160: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:319288: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:319404: CACE ==> CACHE
data/dnapi-1.1/examples/processed.fq:319840: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:322156: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:324724: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:325600: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:326184: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:326204: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:326796: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:326844: EACG ==> EACH
data/dnapi-1.1/examples/processed.fq:329032: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:332472: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:334184: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:337924: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:338984: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:340172: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:340296: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:340416: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:340732: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:341436: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:342232: EDE ==> EDGE
data/dnapi-1.1/examples/processed.fq:342464: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:346740: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:346980: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:347440: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:348076: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:349492: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:350808: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:350864: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:351912: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:353888: AADD ==> ADD
data/dnapi-1.1/examples/processed.fq:356416: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:356912: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:357344: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:358964: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:359156: AADD ==> ADD
data/dnapi-1.1/examples/processed.fq:360632: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:361672: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:361776: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:363364: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:366172: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:366368: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:367152: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:367288: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:368320: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:368664: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:369100: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:369532: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:369820: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:370068: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:370272: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:370588: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:370796: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:370956: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:371224: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:371788: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:372972: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:373536: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:373844: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:373924: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:374888: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:374992: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:375652: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:375724: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:376220: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:376628: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:379756: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:380088: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:380620: DED ==> DEAD
data/dnapi-1.1/examples/processed.fq:382156: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:384136: EGE ==> EDGE
data/dnapi-1.1/examples/processed.fq:385072: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:385412: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:387532: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:388000: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:389700: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:391160: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:392356: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:392464: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:395240: DAA ==> DATA
data/dnapi-1.1/examples/processed.fq:395532: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:396388: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:396488: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:396712: BA ==> BY, BE
data/dnapi-1.1/examples/processed.fq:397712: ADDD ==> ADD
data/dnapi-1.1/examples/processed.fq:398524: AFE ==> SAFE
data/dnapi-1.1/examples/processed.fq:398604: AADD ==> ADD
data/dnapi-1.1/examples/processed.fq:399108: EDE ==> EDGE