data/bali-phy-3.5.0.2+dfsg/NEWS:314: non-existant ==> non-existent data/bali-phy-3.5.0.2+dfsg/bindings/models/m3.json:34: heterogenous ==> heterogeneous data/bali-phy-3.5.0.2+dfsg/doc/Doxyfile:915: therefor ==> therefore data/bali-phy-3.5.0.2+dfsg/doc/Doxyfile:1673: managable ==> manageable, manageably data/bali-phy-3.5.0.2+dfsg/doc/GNUmakefile:4: REAMDE ==> README data/bali-phy-3.5.0.2+dfsg/doc/GNUmakefile:4: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/HMM.lyx:118: ommitted ==> omitted data/bali-phy-3.5.0.2+dfsg/doc/HMM.lyx:1033: Thats ==> That's data/bali-phy-3.5.0.2+dfsg/doc/Instructions6.tut.xml:194: summmary ==> summary data/bali-phy-3.5.0.2+dfsg/doc/README.itex.xml:68: recommand ==> recommend data/bali-phy-3.5.0.2+dfsg/doc/README.itex.xml:978: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/doc/README.itex.xml:1057: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/doc/README.itex.xml:1966: Heterogenous ==> Heterogeneous data/bali-phy-3.5.0.2+dfsg/doc/README.itex.xml:2314: recieve ==> receive data/bali-phy-3.5.0.2+dfsg/doc/README.itex.xml:2441: useable ==> usable data/bali-phy-3.5.0.2+dfsg/doc/Tutorial3.tut.xml:244: Frequences ==> Frequencies data/bali-phy-3.5.0.2+dfsg/doc/Tutorial3.xhtml:163: Frequences ==> Frequencies data/bali-phy-3.5.0.2+dfsg/doc/Tutorial4.tut.xml:105: anlysis ==> analysis data/bali-phy-3.5.0.2+dfsg/doc/Tutorial5.tut.xml:105: anlysis ==> analysis data/bali-phy-3.5.0.2+dfsg/doc/Tutorial5.tut.xml:164: anlysis ==> analysis data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:5: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:9: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:27: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:32: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:41: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:66: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:117: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:119: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:126: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:128: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:145: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:154: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:157: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:160: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:162: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/docbook-fo.xsl:163: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/developer/GNUmakefile:5: REAMDE ==> README data/bali-phy-3.5.0.2+dfsg/doc/developer/GNUmakefile:5: fo ==> of, for data/bali-phy-3.5.0.2+dfsg/doc/developer/building.md:3: Prequisites ==> Prerequisites data/bali-phy-3.5.0.2+dfsg/doc/developer/building.md:32: prequisites ==> prerequisites data/bali-phy-3.5.0.2+dfsg/doc/developer/builtin.md:51: surrouding ==> surrounding data/bali-phy-3.5.0.2+dfsg/doc/developer/distribution.md:31: functon ==> function data/bali-phy-3.5.0.2+dfsg/doc/man/alignment-draw.md:63: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/doc/man/trees-bootstrap.md:54: boostrap ==> bootstrap data/bali-phy-3.5.0.2+dfsg/doc/man/trees-consensus.md:66: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/doc/man/trees-consensus.md:69: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/examples/sequences/lrRNA/mollusc.gb:337: Ser ==> Set data/bali-phy-3.5.0.2+dfsg/examples/sequences/lrRNA/mollusc.gb:340: Ser ==> Set data/bali-phy-3.5.0.2+dfsg/examples/sequences/lrRNA/mollusc.gb:733: Ser ==> Set data/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/30-muscle.fasta:256: FO ==> OF, FOR data/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/30.fasta:273: FO ==> OF, FOR data/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/76-muscle.fasta:785: FO ==> OF, FOR data/bali-phy-3.5.0.2+dfsg/examples/sequences/microbotryum/76.fasta:476: FO ==> OF, FOR data/bali-phy-3.5.0.2+dfsg/external/immer/immer/array_transient.hpp:103: underlaying ==> underlying data/bali-phy-3.5.0.2+dfsg/external/immer/immer/map.hpp:41: cotainer ==> container data/bali-phy-3.5.0.2+dfsg/external/immer/immer/map.hpp:228: succesfull ==> successful data/bali-phy-3.5.0.2+dfsg/external/immer/immer/map.hpp:238: unfortunatelly ==> unfortunately data/bali-phy-3.5.0.2+dfsg/external/immer/immer/memory_policy.hpp:38: wether ==> weather, whether data/bali-phy-3.5.0.2+dfsg/external/immer/immer/memory_policy.hpp:55: wether ==> weather, whether data/bali-phy-3.5.0.2+dfsg/external/immer/immer/vector.hpp:43: cotainer ==> container data/bali-phy-3.5.0.2+dfsg/external/immer/immer/vector.hpp:57: rigurous ==> rigorous data/bali-phy-3.5.0.2+dfsg/external/immer/immer/detail/rbts/operations.hpp:1886: noone ==> no one data/bali-phy-3.5.0.2+dfsg/external/immer/immer/detail/rbts/rrbtree.hpp:783: noone ==> no one data/bali-phy-3.5.0.2+dfsg/external/immer/immer/detail/rbts/rrbtree.hpp:807: noone ==> no one data/bali-phy-3.5.0.2+dfsg/external/immer/immer/detail/rbts/rrbtree.hpp:898: noone ==> no one data/bali-phy-3.5.0.2+dfsg/external/immer/immer/detail/rbts/rrbtree.hpp:920: noone ==> no one data/bali-phy-3.5.0.2+dfsg/external/immer/immer/transience/gc_transience_policy.hpp:89: noone ==> no one data/bali-phy-3.5.0.2+dfsg/external/immer/immer/transience/gc_transience_policy.hpp:101: noone ==> no one data/bali-phy-3.5.0.2+dfsg/external/immer/immer/transience/gc_transience_policy.hpp:108: noone ==> no one data/bali-phy-3.5.0.2+dfsg/external/immer/immer/transience/no_transience_policy.hpp:38: noone ==> no one data/bali-phy-3.5.0.2+dfsg/external/immer/immer/transience/no_transience_policy.hpp:45: noone ==> no one data/bali-phy-3.5.0.2+dfsg/haskell/Probability/Random.hs:20: Independant ==> Independent data/bali-phy-3.5.0.2+dfsg/help/commands/package-path.txt:21: Non-existant ==> Non-existent data/bali-phy-3.5.0.2+dfsg/help/commands/seed.txt:12: Specfying ==> Specifying data/bali-phy-3.5.0.2+dfsg/help/commands/seed.txt:14: occured ==> occurred data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:29: suported ==> supported data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:31: suported ==> supported data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:86: threshhold ==> threshold data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:384: tre ==> tree data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:387: tre ==> tree data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:544: cant ==> can't data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:740: cant ==> can't data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:3613: cant ==> can't data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:3810: cant ==> can't data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:4006: cant ==> can't data/bali-phy-3.5.0.2+dfsg/scripts/bali_phy_xsede.xml:4202: cant ==> can't data/bali-phy-3.5.0.2+dfsg/scripts/bp-analyze:1354: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/bp-analyze:1362: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/bp-analyze:2135: supprt ==> support data/bali-phy-3.5.0.2+dfsg/scripts/bp-analyze:2136: supprt ==> support data/bali-phy-3.5.0.2+dfsg/scripts/bp-analyze.pl:759: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/bp-analyze.pl:982: supprt ==> support data/bali-phy-3.5.0.2+dfsg/scripts/bp-analyze.pl:1519: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/bp-analyze.pl:1529: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:9: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:10: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:11: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:13: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:14: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:15: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:15: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:18: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:18: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:21: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:24: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:24: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:54: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:57: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs.R:58: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:8: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:9: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:10: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:12: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:13: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:14: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:14: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:17: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:17: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:20: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:23: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:23: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:95: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:100: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:104: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:105: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/compare-runs2.R:107: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/git_version.sh:215: occured ==> occurred data/bali-phy-3.5.0.2+dfsg/scripts/git_version.sh:218: occured ==> occurred data/bali-phy-3.5.0.2+dfsg/scripts/plot-path-graph.R:50: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/plot-path-graph.R:59: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/plot-path-graph.R:66: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/scripts/plot-path-graph.R:66: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/alignment/alignment-constraint.cc:124: contraint ==> constraint data/bali-phy-3.5.0.2+dfsg/src/alignment/alignment-constraint.cc:130: contraint ==> constraint data/bali-phy-3.5.0.2+dfsg/src/alignment/alignment-util.cc:350: charaters ==> characters data/bali-phy-3.5.0.2+dfsg/src/alignment/alignment-util.cc:475: distinquish ==> distinguish data/bali-phy-3.5.0.2+dfsg/src/alignment/alignment-util2.cc:209: charaters ==> characters data/bali-phy-3.5.0.2+dfsg/src/alignment/alignment.H:97: extention ==> extension data/bali-phy-3.5.0.2+dfsg/src/alignment/alignment.H:99: extention ==> extension data/bali-phy-3.5.0.2+dfsg/src/bali-phy/A-T-model.cc:36: conver ==> convert data/bali-phy-3.5.0.2+dfsg/src/builtins/Distribution.cc:313: possibilty ==> possibility data/bali-phy-3.5.0.2+dfsg/src/computation/module.cc:959: Indentifier ==> Identifier data/bali-phy-3.5.0.2+dfsg/src/computation/expression/apply.cc:28: occurence ==> occurrence data/bali-phy-3.5.0.2+dfsg/src/computation/expression/modifiable.cc:16: non-existant ==> non-existent data/bali-phy-3.5.0.2+dfsg/src/computation/machine/evaluate.cc:239: changable ==> changeable data/bali-phy-3.5.0.2+dfsg/src/computation/machine/graph_register.cc:36: stuctures ==> structures data/bali-phy-3.5.0.2+dfsg/src/computation/machine/graph_register.cc:70: unchangable ==> unchangeable data/bali-phy-3.5.0.2+dfsg/src/computation/machine/reroot.cc:153: processessing ==> processing data/bali-phy-3.5.0.2+dfsg/src/computation/optimization/simplifier.cc:422: informatation ==> information data/bali-phy-3.5.0.2+dfsg/src/computation/optimization/simplifier.cc:554: anythign ==> anything data/bali-phy-3.5.0.2+dfsg/src/dp/dp-cube.cc:131: substracting ==> subtracting data/bali-phy-3.5.0.2+dfsg/src/dp/hmm.cc:172: recieved ==> received data/bali-phy-3.5.0.2+dfsg/src/imodel/imodel.cc:937: occuring ==> occurring data/bali-phy-3.5.0.2+dfsg/src/math/exponential.cc:52: constructued ==> constructed data/bali-phy-3.5.0.2+dfsg/src/mcmc/moves.cc:459: structue ==> structure data/bali-phy-3.5.0.2+dfsg/src/mcmc/sample-branch-lengths.cc:381: techincally ==> technically data/bali-phy-3.5.0.2+dfsg/src/mcmc/sample-topology-SPR.cc:515: optionall ==> optional, optionally data/bali-phy-3.5.0.2+dfsg/src/mcmc/sample-topology-SPR.cc:1079: attch ==> attach data/bali-phy-3.5.0.2+dfsg/src/mcmc/setup.cc:736: arameters ==> parameters data/bali-phy-3.5.0.2+dfsg/src/models/setup.cc:721: Peform ==> Perform data/bali-phy-3.5.0.2+dfsg/src/models/setup.cc:820: definining ==> defining data/bali-phy-3.5.0.2+dfsg/src/sequence/alphabet.H:539: frequences ==> frequencies data/bali-phy-3.5.0.2+dfsg/src/sequence/sequence-format.cc:303: aligment ==> alignment data/bali-phy-3.5.0.2+dfsg/src/tools/alignment-consensus.cc:188: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/alignment-consensus.cc:190: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/alignment-draw.cc:534: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/alignment-draw.cc:678: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/alignment-gild.cc:262: compatability ==> compatibility data/bali-phy-3.5.0.2+dfsg/src/tools/alignment-max.cc:692: probabilites ==> probabilities data/bali-phy-3.5.0.2+dfsg/src/tools/alignment-thin.cc:418: removeable ==> removable data/bali-phy-3.5.0.2+dfsg/src/tools/consensus-tree.cc:321: prefering ==> preferring data/bali-phy-3.5.0.2+dfsg/src/tools/draw-tree.cc:2393: attatchment ==> attachment data/bali-phy-3.5.0.2+dfsg/src/tools/draw-tree.cc:3681: attatchment ==> attachment data/bali-phy-3.5.0.2+dfsg/src/tools/mctree.cc:437: hight ==> height, high data/bali-phy-3.5.0.2+dfsg/src/tools/optimize.cc:265: neigborhood ==> neighborhood data/bali-phy-3.5.0.2+dfsg/src/tools/plot-script.R:44: axix ==> axis data/bali-phy-3.5.0.2+dfsg/src/tools/read-trees.cc:44: INTENSION ==> INTENTION data/bali-phy-3.5.0.2+dfsg/src/tools/trees-bootstrap.cc:281: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-bootstrap.cc:318: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-bootstrap.cc:320: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-bootstrap.cc:321: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-bootstrap.cc:418: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-bootstrap.cc:509: boostrap ==> bootstrap data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:313: parition ==> partition data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:422: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:423: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:486: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:486: columsn ==> columns data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:505: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:510: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:515: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:515: columsn ==> columns data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:538: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:548: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:1073: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tools/trees-consensus.cc:1107: LOD ==> LOAD data/bali-phy-3.5.0.2+dfsg/src/tree/tree.H:217: indiate ==> indicate data/bali-phy-3.5.0.2+dfsg/src/tree/tree.cc:263: attatched ==> attached data/bali-phy-3.5.0.2+dfsg/src/util/include/util/cow-ptr.H:23: modifed ==> modified data/bali-phy-3.5.0.2+dfsg/debian/lintian-overrides:2: AfE ==> safe