data/augur-10.1.1/CHANGES.md:492: compatibiliy ==> compatibility
data/augur-10.1.1/CHANGES.md:573: enviroment ==> environment
data/augur-10.1.1/augur/align.py:28: ouput ==> output
data/augur-10.1.1/augur/align.py:254: aligment ==> alignment
data/augur-10.1.1/augur/align.py:420: exluded ==> excluded, exuded
data/augur-10.1.1/augur/export_v1.py:252: compatability ==> compatibility
data/augur-10.1.1/augur/export_v1.py:254: relevent ==> relevant
data/augur-10.1.1/augur/export_v1.py:256: relevent ==> relevant
data/augur-10.1.1/augur/export_v2.py:342: acceptible ==> acceptable
data/augur-10.1.1/augur/export_v2.py:717: Ouput ==> Output
data/augur-10.1.1/augur/export_v2.py:826: desciption ==> description
data/augur-10.1.1/augur/filter.py:77: wtih ==> with
data/augur-10.1.1/augur/filter.py:304: didnt ==> didn't
data/augur-10.1.1/augur/frequencies.py:63: absense ==> absence
data/augur-10.1.1/augur/frequency_estimators.py:181: explicity ==> explicitly
data/augur-10.1.1/augur/frequency_estimators.py:187: intertia ==> inertia
data/augur-10.1.1/augur/frequency_estimators.py:188: intertia ==> inertia
data/augur-10.1.1/augur/frequency_estimators.py:570: bernouilli ==> bernoulli
data/augur-10.1.1/augur/frequency_estimators.py:650: aligment ==> alignment
data/augur-10.1.1/augur/frequency_estimators.py:671: indicies ==> indices
data/augur-10.1.1/augur/frequency_estimators.py:991: kernal ==> kernel
data/augur-10.1.1/augur/import_beast.py:65: unparseable ==> unparsable
data/augur-10.1.1/augur/import_beast.py:360: delimeter ==> delimiter
data/augur-10.1.1/augur/import_beast.py:566: nd ==> and, 2nd
data/augur-10.1.1/augur/import_beast.py:566: nd ==> and, 2nd
data/augur-10.1.1/augur/reconstruct_sequences.py:62: existance ==> existence
data/augur-10.1.1/augur/sequence_traits.py:258: fo ==> of, for
data/augur-10.1.1/augur/titer_model.py:241: otherwuise ==> otherwise
data/augur-10.1.1/augur/titer_model.py:325: dictionay ==> dictionary
data/augur-10.1.1/augur/titer_model.py:637: auxillary ==> auxiliary
data/augur-10.1.1/augur/titer_model.py:701: auxillary ==> auxiliary
data/augur-10.1.1/augur/titer_model.py:708: auxillary ==> auxiliary
data/augur-10.1.1/augur/titer_model.py:924: neede ==> needed, need
data/augur-10.1.1/augur/titer_model.py:956: substitions ==> substitutions
data/augur-10.1.1/augur/titer_model.py:1070: measurment ==> measurement
data/augur-10.1.1/augur/titer_model.py:1102: whcih ==> which
data/augur-10.1.1/augur/tree.py:37: tre ==> tree
data/augur-10.1.1/augur/tree.py:133: aligment ==> alignment
data/augur-10.1.1/augur/utils.py:437: overlayed ==> overlaid
data/augur-10.1.1/augur/data/schema-auspice-config-v2.json:20: indiviual ==> individual
data/augur-10.1.1/augur/data/schema-auspice-config-v2.json:56: indiviual ==> individual
data/augur-10.1.1/augur/data/schema-auspice-config-v2.json:72: indiviual ==> individual
data/augur-10.1.1/augur/data/schema-export-v1-tree.json:132: occuring ==> occurring
data/augur-10.1.1/augur/data/schema-export-v1-tree.json:144: occuring ==> occurring
data/augur-10.1.1/augur/data/schema-export-v2.json:117: indiviual ==> individual
data/augur-10.1.1/augur/data/schema-export-v2.json:163: indiviual ==> individual
data/augur-10.1.1/augur/data/schema-export-v2.json:244: seperate ==> separate
data/augur-10.1.1/augur/data/schema-export-v2.json:358: agaisnt ==> against
data/augur-10.1.1/augur/data/schema-export-v2.json:415: occuring ==> occurring
data/augur-10.1.1/augur/util_support/shell_command_runner.py:17: overlayed ==> overlaid
data/augur-10.1.1/docs/contribute/DEV_DOCS.md:92: fo ==> of, for
data/augur-10.1.1/docs/faq/colors.md:30: separted ==> separated
data/augur-10.1.1/docs/faq/metadata.md:7: formated ==> formatted
data/augur-10.1.1/docs/faq/metadata.md:32: formated ==> formatted
data/augur-10.1.1/docs/faq/metadata.md:42: Consistancy ==> Consistency
data/augur-10.1.1/docs/faq/metadata.md:44: consistant ==> consistent
data/augur-10.1.1/docs/releases/auspice-compatibility.md:20: outputing ==> outputting
data/augur-10.1.1/docs/releases/breaking.md:5: dependancy ==> dependency
data/augur-10.1.1/docs/releases/changelog.md:492: compatibiliy ==> compatibility
data/augur-10.1.1/docs/releases/changelog.md:573: enviroment ==> environment
data/augur-10.1.1/docs/usage/cli/parse.rst:57: preceeds ==> precedes, proceeds
data/augur-10.1.1/docs/usage/cli/traits.rst:24: interpretted ==> interpreted
data/augur-10.1.1/docs/usage/cli/traits.rst:25: consistant ==> consistent
data/augur-10.1.1/scripts/tree_to_JSON.py:24: continous ==> continuous
data/augur-10.1.1/scripts/tree_to_JSON.py:33: Maintaner ==> Maintainer
data/augur-10.1.1/scripts/tree_to_JSON.py:237: relevent ==> relevant
data/augur-10.1.1/scripts/verify_meta_json.py:42: incompatable ==> incompatible
data/augur-10.1.1/tests/test_align.py:256: refrence ==> reference
data/augur-10.1.1/tests/test_align.py:259: ouput ==> output
data/augur-10.1.1/tests/test_align.py:297: refrence ==> reference
data/augur-10.1.1/tests/builds/beast_mers/data/MERS_CoV_274_mcc.tree:253: THA ==> THAN, THAT, THE
data/augur-10.1.1/tests/builds/beast_mers/data/MERS_CoV_274_mcc.tree:531: THA ==> THAN, THAT, THE
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:42: Ser ==> Set
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:44: Ser ==> Set
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:194: formate ==> format
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:194: formate ==> format
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:200: formate ==> format
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:200: formate ==> format
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:874: thiE ==> the, this
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:875: thiE ==> the, this
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:890: thiD ==> this
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:891: ThiD ==> this
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:891: thiD ==> this
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:1980: Ser ==> Set
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:2483: FO ==> OF, FOR
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:3146: acn ==> can, acne
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:3147: Acn ==> Can, acne
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:3147: acn ==> can, acne
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:3869: ALS ==> ALSO
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5354: hisT ==> heist, his
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5355: hisT ==> heist, his
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5355: hisT ==> heist, his
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5356: hisT ==> heist, his
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5356: hisT ==> heist, his
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5452: Holliday ==> Holiday
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5527: Holliday ==> Holiday
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5529: Holliday ==> Holiday
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5531: holliday ==> holiday
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5531: holliday ==> holiday
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5645: valU ==> value
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5646: valU ==> value
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5646: valU ==> value
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5647: valU ==> value
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:5647: valU ==> value
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:6223: formate ==> format
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:6225: formate ==> format
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:6225: formate ==> format
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:6450: ALS ==> ALSO
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:6741: formate ==> format
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:6741: formate ==> format
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:7449: ALS ==> ALSO
data/augur-10.1.1/tests/builds/tb/data/Mtb_H37Rv_NCBI_Annot.gff:7725: folX ==> folks
data/augur-10.1.1/tests/builds/tb/data/lee_2015.vcf:18: minimumN ==> minimum
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:42: Ser ==> Set
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:44: Ser ==> Set
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:194: formate ==> format
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:194: formate ==> format
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:200: formate ==> format
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:200: formate ==> format
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:874: thiE ==> the, this
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:875: thiE ==> the, this
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:890: thiD ==> this
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:891: ThiD ==> this
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:891: thiD ==> this
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:1980: Ser ==> Set
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:2483: FO ==> OF, FOR
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:3146: acn ==> can, acne
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:3147: Acn ==> Can, acne
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:3147: acn ==> can, acne
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:3869: ALS ==> ALSO
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5354: hisT ==> heist, his
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5355: hisT ==> heist, his
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5355: hisT ==> heist, his
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5356: hisT ==> heist, his
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5356: hisT ==> heist, his
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5452: Holliday ==> Holiday
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5527: Holliday ==> Holiday
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5529: Holliday ==> Holiday
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5531: holliday ==> holiday
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5531: holliday ==> holiday
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5645: valU ==> value
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5646: valU ==> value
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5646: valU ==> value
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5647: valU ==> value
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:5647: valU ==> value
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:6223: formate ==> format
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:6225: formate ==> format
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:6225: formate ==> format
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:6450: ALS ==> ALSO
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:6741: formate ==> format
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:6741: formate ==> format
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:7449: ALS ==> ALSO
data/augur-10.1.1/tests/builds/tb_drm/data/Mtb_H37Rv_NCBI_Annot.gff:7725: folX ==> folks
data/augur-10.1.1/tests/builds/zika/config/dropped_strains.txt:39: THA ==> THAN, THAT, THE
data/augur-10.1.1/tests/builds/zika/config/dropped_strains.txt:44: VIE ==> VIA