    data/cnvkit-0.9.7/CITATION:3: Botton ==> Bottom, button
    data/cnvkit-0.9.7/CITATION:12: Botton ==> Bottom, button
    data/cnvkit-0.9.7/cnvlib/bintest.py:23: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/bintest.py:25: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/cmdutil.py:7: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/cmdutil.py:12: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/cnary.py:83: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/coverage.py:15: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/coverage.py:45: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/coverage.py:53: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/coverage.py:54: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/coverage.py:62: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/coverage.py:169: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/diagram.py:47: signficant ==> significant
    data/cnvkit-0.9.7/cnvlib/export.py:372: cna ==> can
    data/cnvkit-0.9.7/cnvlib/export.py:373: cna ==> can
    data/cnvkit-0.9.7/cnvlib/export.py:377: cna ==> can
    data/cnvkit-0.9.7/cnvlib/export.py:378: cna ==> can
    data/cnvkit-0.9.7/cnvlib/export.py:382: cna ==> can
    data/cnvkit-0.9.7/cnvlib/export.py:383: cna ==> can
    data/cnvkit-0.9.7/cnvlib/heatmap.py:59: cna ==> can
    data/cnvkit-0.9.7/cnvlib/heatmap.py:61: cna ==> can
    data/cnvkit-0.9.7/cnvlib/heatmap.py:62: cna ==> can
    data/cnvkit-0.9.7/cnvlib/metrics.py:12: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/metrics.py:13: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/metrics.py:15: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/metrics.py:22: cna ==> can
    data/cnvkit-0.9.7/cnvlib/metrics.py:22: cna ==> can
    data/cnvkit-0.9.7/cnvlib/metrics.py:23: cna ==> can
    data/cnvkit-0.9.7/cnvlib/metrics.py:23: cna ==> can
    data/cnvkit-0.9.7/cnvlib/metrics.py:25: cna ==> can
    data/cnvkit-0.9.7/cnvlib/metrics.py:26: cna ==> can
    data/cnvkit-0.9.7/cnvlib/plots.py:197: Utilies ==> Utilities
    data/cnvkit-0.9.7/cnvlib/reference.py:12: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/reference.py:47: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/reference.py:174: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/reference.py:177: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/reference.py:197: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/reference.py:357: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/reports.py:144: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/rna.py:11: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/rna.py:216: emiting ==> emitting
    data/cnvkit-0.9.7/cnvlib/rna.py:389: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/scatter.py:11: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/scatter.py:336: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/scatter.py:338: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/scatter.py:503: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/segmetrics.py:67: ser ==> set
    data/cnvkit-0.9.7/cnvlib/segmetrics.py:68: ser ==> set
    data/cnvkit-0.9.7/cnvlib/segmetrics.py:78: ser ==> set
    data/cnvkit-0.9.7/cnvlib/segmetrics.py:79: ser ==> set
    data/cnvkit-0.9.7/cnvlib/segmetrics.py:87: ser ==> set
    data/cnvkit-0.9.7/cnvlib/segmetrics.py:88: ser ==> set
    data/cnvkit-0.9.7/cnvlib/segmetrics.py:89: ser ==> set
    data/cnvkit-0.9.7/cnvlib/segmetrics.py:90: ser ==> set
    data/cnvkit-0.9.7/cnvlib/segmetrics.py:91: ser ==> set
    data/cnvkit-0.9.7/cnvlib/segmetrics.py:167: Accellerated ==> Accelerated
    data/cnvkit-0.9.7/cnvlib/commands.py:505: refence ==> reference
    data/cnvkit-0.9.7/cnvlib/commands.py:1229: cna ==> can
    data/cnvkit-0.9.7/cnvlib/commands.py:1230: cna ==> can
    data/cnvkit-0.9.7/cnvlib/commands.py:1231: cna ==> can
    data/cnvkit-0.9.7/cnvlib/commands.py:1231: cna ==> can
    data/cnvkit-0.9.7/cnvlib/commands.py:1236: cna ==> can
    data/cnvkit-0.9.7/cnvlib/commands.py:1236: cna ==> can
    data/cnvkit-0.9.7/cnvlib/commands.py:1410: threhold ==> threshold
    data/cnvkit-0.9.7/cnvlib/commands.py:1647: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/commands.py:1648: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:15: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:52: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:56: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:56: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:66: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:73: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:75: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:77: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:78: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:164: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/segmentation/__init__.py:263: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/segmentation/cbs.py:16: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/cbs.py:16: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/segmentation/cbs.py:25: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/cbs.py:25: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/segmentation/cbs.py:25: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/cbs.py:29: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/cbs.py:31: cna ==> can
    data/cnvkit-0.9.7/cnvlib/segmentation/haar.py:18: measurments ==> measurements
    data/cnvkit-0.9.7/cnvlib/segmentation/haar.py:18: measurments ==> measurements
    data/cnvkit-0.9.7/cnvlib/segmentation/haar.py:19: extentions ==> extensions
    data/cnvkit-0.9.7/cnvlib/segmentation/haar.py:142: measurments ==> measurements
    data/cnvkit-0.9.7/cnvlib/segmentation/hmm.py:13: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/segmentation/hmm.py:197: CNA ==> CAN
    data/cnvkit-0.9.7/cnvlib/segmentation/none.py:4: CNA ==> CAN
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:14962: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:14963: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:14964: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:14965: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:14966: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:14967: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:14968: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69522: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69523: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69524: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69525: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69526: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69527: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69528: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69529: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69530: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69531: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69532: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69533: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69534: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69535: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69536: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69537: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69538: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:69539: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:82882: SYCN ==> SYNC
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166885: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166886: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166887: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166888: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166889: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166890: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166891: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166892: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166893: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166894: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:166895: VILL ==> WILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:192830: STIL ==> STILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:192831: STIL ==> STILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:192832: STIL ==> STILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:192833: STIL ==> STILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:192834: STIL ==> STILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:192835: STIL ==> STILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:192836: STIL ==> STILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:192837: STIL ==> STILL
    data/cnvkit-0.9.7/data/ensembl-gene-info.hg38.tsv:192838: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9759: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9760: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9761: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9762: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9763: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9764: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9765: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9766: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9767: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9768: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9769: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9770: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9771: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9772: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9773: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9774: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9775: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9776: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9777: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9778: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9779: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9780: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:9781: STIL ==> STILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34502: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34503: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34504: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34505: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34506: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34507: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34508: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34509: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34510: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34511: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34512: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34513: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34514: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34515: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34516: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34517: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:34518: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58321: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58322: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58323: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58324: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58325: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58326: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58327: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58328: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58329: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58330: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58331: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58332: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58333: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58334: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58335: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58336: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58337: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58338: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:58339: VILL ==> WILL
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:70300: SELT ==> SET, SELF, SOLD
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:70301: SELT ==> SET, SELF, SOLD
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:70302: SELT ==> SET, SELF, SOLD
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:70303: SELT ==> SET, SELF, SOLD
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:70304: SELT ==> SET, SELF, SOLD
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:70305: SELT ==> SET, SELF, SOLD
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222578: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222579: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222580: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222581: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222582: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222583: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222584: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222585: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222586: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222587: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222588: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222589: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222590: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222591: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222592: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222593: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222594: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222595: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222596: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222597: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222598: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222599: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222600: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222601: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222602: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222603: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222604: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222605: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222606: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222607: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222608: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222609: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222610: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222611: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222612: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222613: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222614: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222615: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222616: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222617: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222618: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222619: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222620: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222621: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222622: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222623: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222624: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222625: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:222626: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:231097: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:231098: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:231099: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:231100: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:231101: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:231102: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:231103: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:231104: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:231105: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285404: SYCN ==> SYNC
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285405: SYCN ==> SYNC
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285406: SYCN ==> SYNC
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285536: SELV ==> SELF
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285537: SELV ==> SELF
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285538: SELV ==> SELF
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285539: SELV ==> SELF
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285540: SELV ==> SELF
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285541: SELV ==> SELF
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285542: SELV ==> SELF
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:285543: SELV ==> SELF
    data/cnvkit-0.9.7/data/interval-exome.target-267.bed:297870: BAGE ==> BAG
    data/cnvkit-0.9.7/data/interval-nv2.target-267.bed:665: BRE ==> BE, BRIE
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    data/cnvkit-0.9.7/data/tcga-skcm.cnv-expr-corr.tsv:4479: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
    data/cnvkit-0.9.7/data/tcga-skcm.cnv-expr-corr.tsv:6304: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/data/tcga-skcm.cnv-expr-corr.tsv:9407: VILL ==> WILL
    data/cnvkit-0.9.7/data/tcga-skcm.cnv-expr-corr.tsv:9584: NIN ==> INN, MIN, BIN, NINE
    data/cnvkit-0.9.7/data/tcga-skcm.cnv-expr-corr.tsv:9894: SELT ==> SET, SELF, SOLD
    data/cnvkit-0.9.7/data/tcga-skcm.cnv-expr-corr.tsv:17576: SYCN ==> SYNC
    data/cnvkit-0.9.7/data/tcga-skcm.cnv-expr-corr.tsv:17706: SELV ==> SELF
    data/cnvkit-0.9.7/doc/calling.rst:7: CNA ==> CAN
    data/cnvkit-0.9.7/doc/heterogeneity.rst:21: belived ==> believed, beloved
    data/cnvkit-0.9.7/doc/heterogeneity.rst:98: CNA ==> CAN
    data/cnvkit-0.9.7/doc/index.rst:30: Botton ==> Bottom, button
    data/cnvkit-0.9.7/doc/pipeline.rst:193: inaccessable ==> inaccessible
    data/cnvkit-0.9.7/doc/pipeline.rst:775: scatch ==> catch, scratch, sketch
    data/cnvkit-0.9.7/doc/plots.rst:142: frequences ==> frequencies
    data/cnvkit-0.9.7/doc/plots.rst:229: disply ==> display
    data/cnvkit-0.9.7/doc/plots.rst:318: intepreter ==> interpreter
    data/cnvkit-0.9.7/doc/reports.rst:16: occured ==> occurred
    data/cnvkit-0.9.7/doc/reports.rst:96: CNA ==> CAN
    data/cnvkit-0.9.7/scripts/cnv_expression_correlate.py:28: formate ==> format
    data/cnvkit-0.9.7/skgenome/gary.py:469: ser ==> set
    data/cnvkit-0.9.7/skgenome/gary.py:471: ser ==> set
    data/cnvkit-0.9.7/skgenome/intersect.py:63: ser ==> set
    data/cnvkit-0.9.7/skgenome/intersect.py:64: ser ==> set
    data/cnvkit-0.9.7/skgenome/intersect.py:66: ser ==> set
    data/cnvkit-0.9.7/skgenome/intersect.py:67: ser ==> set
    data/cnvkit-0.9.7/skgenome/intersect.py:68: ser ==> set
    data/cnvkit-0.9.7/skgenome/tabio/gff.py:42: eith ==> with
    data/cnvkit-0.9.7/skgenome/tabio/vcfsimple.py:79: appy ==> apply
    data/cnvkit-0.9.7/test/test_commands.py:218: cna ==> can
    data/cnvkit-0.9.7/test/test_commands.py:222: cna ==> can
    data/cnvkit-0.9.7/test/test_commands.py:223: cna ==> can
    data/cnvkit-0.9.7/test/test_commands.py:224: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:30: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:32: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:36: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:38: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:39: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:40: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:40: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:41: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:41: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:42: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:43: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:47: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:49: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:67: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:68: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:69: cna ==> can
    data/cnvkit-0.9.7/test/test_cnvlib.py:71: cna ==> can
    data/cnvkit-0.9.7/test/test_io.py:60: cna ==> can
    data/cnvkit-0.9.7/test/test_io.py:61: cna ==> can
    data/cnvkit-0.9.7/test/test_io.py:62: cna ==> can
    data/cnvkit-0.9.7/test/formats/cl_seq.cns:8: BRE ==> BE, BRIE
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    data/cnvkit-0.9.7/test/formats/p2-20_1.cnr:1674: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/formats/p2-20_2.cnr:1674: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/formats/reference-tr.cnn:2370: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/formats/tr95t.cns:8: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/formats/tr95t.segmetrics.cns:8: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p1-21_1.targetcoverage.csv:468: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p1-21_2.targetcoverage.csv:468: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p1-21_3.targetcoverage.csv:468: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p1-21_4.targetcoverage.csv:468: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p1-21_5.targetcoverage.csv:468: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-20_1.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-20_2.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-20_3.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-20_4.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-20_5.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-5_1.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-5_2.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-5_5.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-9_1.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-9_2.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/test/picard/p2-9_5.targetcoverage.csv:552: BRE ==> BE, BRIE
    data/cnvkit-0.9.7/debian/patches/spelling:9: excecutable ==> executable
    data/cnvkit-0.9.7/debian/patches/spelling:18: excecutable ==> executable
    data/cnvkit-0.9.7/debian/upstream/metadata:5: Botton ==> Bottom, button
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:30: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:32: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:36: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:38: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:39: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:40: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:40: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:41: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:41: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:42: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:43: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:47: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:49: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:67: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:68: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:69: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_cnvlib.py:71: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_io.py:60: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_io.py:61: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/test/test_io.py:62: cna ==> can
    data/cnvkit-0.9.7/.pc/python3compat.patch/scripts/cnv_expression_correlate.py:28: formate ==> format
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:179: excecutable ==> executable
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:505: refence ==> reference
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:699: excecutable ==> executable
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:1229: cna ==> can
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:1230: cna ==> can
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:1231: cna ==> can
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:1231: cna ==> can
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:1236: cna ==> can
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:1236: cna ==> can
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:1410: threhold ==> threshold
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:1646: CNA ==> CAN
    data/cnvkit-0.9.7/.pc/spelling/cnvlib/commands.py:1647: CNA ==> CAN
    data/cnvkit-0.9.7/.pc/controldir/cnvlib/commands.py:505: refence ==> reference
    data/cnvkit-0.9.7/.pc/controldir/cnvlib/commands.py:1229: cna ==> can
    data/cnvkit-0.9.7/.pc/controldir/cnvlib/commands.py:1230: cna ==> can
    data/cnvkit-0.9.7/.pc/controldir/cnvlib/commands.py:1231: cna ==> can
    data/cnvkit-0.9.7/.pc/controldir/cnvlib/commands.py:1231: cna ==> can
    data/cnvkit-0.9.7/.pc/controldir/cnvlib/commands.py:1236: cna ==> can
    data/cnvkit-0.9.7/.pc/controldir/cnvlib/commands.py:1236: cna ==> can
    data/cnvkit-0.9.7/.pc/controldir/cnvlib/commands.py:1410: threhold ==> threshold
    data/cnvkit-0.9.7/.pc/controldir/cnvlib/commands.py:1646: CNA ==> CAN
    data/cnvkit-0.9.7/.pc/controldir/cnvlib/commands.py:1647: CNA ==> CAN