    data/beagle-5.1-200518+dfsg/bref/Bref3Reader.java:124: sentinal ==> sentinel
    data/beagle-5.1-200518+dfsg/bref/Bref3Reader.java:233: ba ==> by, be
    data/beagle-5.1-200518+dfsg/bref/Bref3Reader.java:234: ba ==> by, be
    data/beagle-5.1-200518+dfsg/bref/Bref3Reader.java:235: ba ==> by, be
    data/beagle-5.1-200518+dfsg/bref/Bref3Reader.java:236: ba ==> by, be
    data/beagle-5.1-200518+dfsg/bref/Bref3Reader.java:236: ba ==> by, be
    data/beagle-5.1-200518+dfsg/bref/Bref3Reader.java:237: ba ==> by, be
    data/beagle-5.1-200518+dfsg/bref/Bref3Reader.java:237: ba ==> by, be
    data/beagle-5.1-200518+dfsg/bref/CompressBref3Writer.java:60: Chracter ==> Character
    data/beagle-5.1-200518+dfsg/bref/UnBref3.java:106: ouput ==> output
    data/beagle-5.1-200518+dfsg/bref/SeqCoder3.java:81: Chracter ==> Character
    data/beagle-5.1-200518+dfsg/phase/RecombRegress.java:144: numer ==> number
    data/beagle-5.1-200518+dfsg/phase/RecombRegress.java:153: numer ==> number
    data/beagle-5.1-200518+dfsg/phase/RecombRegress.java:158: numer ==> number
    data/beagle-5.1-200518+dfsg/phase/EstPhase.java:129: inconstent ==> inconsistent, inconstant
    data/beagle-5.1-200518+dfsg/phase/PhaseLS.java:82: reproducability ==> reproducibility
    data/beagle-5.1-200518+dfsg/phase/PbwtPhaseIbs.java:112: sentinal ==> sentinel
    data/beagle-5.1-200518+dfsg/phase/PbwtPhaseIbs.java:141: sentinal ==> sentinel
    data/beagle-5.1-200518+dfsg/phase/PbwtPhaseIbs.java:164: sentinals ==> sentinels
    data/beagle-5.1-200518+dfsg/phase/PbwtPhaseIbs.java:195: sentinals ==> sentinels
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:36: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:41: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:43: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:45: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:46: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:46: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:52: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:58: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:60: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:61: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:61: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:106: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:111: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:132: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:133: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:138: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:156: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:161: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:179: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:185: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:191: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/UnsignedByteArray.java:196: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:106: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:116: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:118: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:118: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:124: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:138: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:141: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:147: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:158: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:160: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:160: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:166: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:181: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:184: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:187: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:201: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:212: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:216: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:225: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:228: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:232: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:233: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:239: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:242: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/PackedIntArray.java:242: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/CharArray.java:39: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/CharArray.java:40: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/CharArray.java:43: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/CharArray.java:44: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/CharArray.java:45: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/CharArray.java:47: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/CharArray.java:48: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/CharArray.java:49: ba ==> by, be
    data/beagle-5.1-200518+dfsg/ints/CharArray.java:50: ba ==> by, be
    data/beagle-5.1-200518+dfsg/main/WindowWriter.java:198: ba ==> by, be
    data/beagle-5.1-200518+dfsg/main/WindowWriter.java:199: ba ==> by, be
    data/beagle-5.1-200518+dfsg/vcf/RefIt.java:59: SENTINAL ==> SENTINEL
    data/beagle-5.1-200518+dfsg/vcf/RefIt.java:189: SENTINAL ==> SENTINEL
    data/beagle-5.1-200518+dfsg/vcf/RefIt.java:205: sentinal ==> sentinel
    data/beagle-5.1-200518+dfsg/vcf/RefIt.java:205: qeueue ==> queue
    data/beagle-5.1-200518+dfsg/vcf/VcfRec.java:249: alpha-numeric ==> alphanumeric
    data/beagle-5.1-200518+dfsg/blbutil/BGZIPOutputStream.java:88: ba ==> by, be
    data/beagle-5.1-200518+dfsg/blbutil/BGZIPOutputStream.java:89: ba ==> by, be
    data/beagle-5.1-200518+dfsg/blbutil/BGZIPOutputStream.java:91: ba ==> by, be
    data/beagle-5.1-200518+dfsg/blbutil/BGZIPOutputStream.java:92: ba ==> by, be
    data/beagle-5.1-200518+dfsg/blbutil/BGZIPOutputStream.java:164: ba ==> by, be
    data/beagle-5.1-200518+dfsg/blbutil/BGZIPOutputStream.java:177: ba ==> by, be
    data/beagle-5.1-200518+dfsg/blbutil/BGZIPOutputStream.java:196: ba ==> by, be
    data/beagle-5.1-200518+dfsg/blbutil/BGZIPOutputStream.java:197: ba ==> by, be
    data/beagle-5.1-200518+dfsg/blbutil/BGZIPOutputStream.java:197: ba ==> by, be
    data/beagle-5.1-200518+dfsg/debian/beagle.1:163: LOD ==> LOAD