    data/exonerate-2.4.0/ChangeLog:45: substition ==> substitution
    data/exonerate-2.4.0/ChangeLog:333: implemention ==> implementation
    data/exonerate-2.4.0/TODO:178: transistion ==> transition
    data/exonerate-2.4.0/TODO:184: DOCUMENTATON ==> DOCUMENTATION
    data/exonerate-2.4.0/config.guess:131: tupples ==> tuples
    data/exonerate-2.4.0/config.guess:284: Ake ==> Ache
    data/exonerate-2.4.0/config.sub:623: msdos ==> ms-dos
    data/exonerate-2.4.0/missing:4: ois ==> is
    data/exonerate-2.4.0/doc/man/man1/exonerate-server.1:457: distrubuted ==> distributed
    data/exonerate-2.4.0/doc/man/man1/exonerate.1:36: idiosyncracies ==> idiosyncrasies
    data/exonerate-2.4.0/doc/man/man1/exonerate.1:80: transistion ==> transition
    data/exonerate-2.4.0/doc/man/man1/exonerate.1:274: ammount ==> amount
    data/exonerate-2.4.0/doc/man/man1/exonerate.1:408: alignemnt ==> alignment
    data/exonerate-2.4.0/doc/man/man1/exonerate.1:1385: distrubuted ==> distributed
    data/exonerate-2.4.0/doc/man/man1/fastautils.1:84: distrubuted ==> distributed
    data/exonerate-2.4.0/doc/man/man1/ipcress.1:232: Specifiy ==> Specify
    data/exonerate-2.4.0/doc/man/man1/ipcress.1:269: distrubuted ==> distributed
    data/exonerate-2.4.0/src/struct/bitarray.test.c:19: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.test.c:22: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.test.c:23: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.test.c:24: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:44: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:48: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:51: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:53: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:57: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:62: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:67: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:72: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:79: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:84: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:87: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:101: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:132: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:136: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:141: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:147: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:171: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.c:175: ba ==> by, be
    data/exonerate-2.4.0/src/struct/slist.h:105: beggining ==> beginning
    data/exonerate-2.4.0/src/struct/bitarray.h:37: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.h:39: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.h:42: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.h:43: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.h:44: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.h:45: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.h:48: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.h:49: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.h:50: ba ==> by, be
    data/exonerate-2.4.0/src/struct/bitarray.h:51: ba ==> by, be
    data/exonerate-2.4.0/src/general/compoundfile.c:93: incase ==> in case
    data/exonerate-2.4.0/src/general/jobqueue.c:133: runnning ==> running
    data/exonerate-2.4.0/src/sequence/alphabet.c:335: Ser ==> Set
    data/exonerate-2.4.0/src/sequence/translate.c:72: iST ==> is, it, its, it's, sit, list
    data/exonerate-2.4.0/src/comparison/seeder.h:111: occurence ==> occurrence
    data/exonerate-2.4.0/src/database/fastadb.c:1042: suppport ==> support
    data/exonerate-2.4.0/src/database/index.c:462: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:466: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:468: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:471: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:472: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:727: occuring ==> occurring
    data/exonerate-2.4.0/src/database/index.c:1180: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:1186: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:1195: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:1202: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:1205: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:1210: ba ==> by, be
    data/exonerate-2.4.0/src/database/index.c:2008: addresss ==> address
    data/exonerate-2.4.0/src/database/dataset.h:41: ND ==> AND, 2ND
    data/exonerate-2.4.0/src/database/dataset.c:434: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:438: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:440: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:442: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:444: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:445: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:446: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:448: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:455: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:464: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:466: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:468: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:470: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:480: ba ==> by, be
    data/exonerate-2.4.0/src/database/dataset.c:482: ba ==> by, be
    data/exonerate-2.4.0/src/c4/alignment.c:514: absense ==> absence
    data/exonerate-2.4.0/src/c4/codegen.c:148: preceeding ==> preceding, proceeding
    data/exonerate-2.4.0/src/c4/codegen.c:217: enviroment ==> environment
    data/exonerate-2.4.0/src/c4/viterbi.c:29: vas ==> was
    data/exonerate-2.4.0/src/c4/viterbi.c:34: vas ==> was
    data/exonerate-2.4.0/src/c4/viterbi.c:37: vas ==> was
    data/exonerate-2.4.0/src/c4/viterbi.c:66: vas ==> was
    data/exonerate-2.4.0/src/c4/viterbi.c:979: TE ==> THE, BE, WE
    data/exonerate-2.4.0/src/c4/cgutil.c:22: spagetti ==> spaghetti
    data/exonerate-2.4.0/src/c4/viterbi.h:112: vas ==> was
    data/exonerate-2.4.0/src/bsdp/heuristic.c:237: preceeding ==> preceding, proceeding
    data/exonerate-2.4.0/src/sdp/lookahead.h:35: greather ==> greater
    data/exonerate-2.4.0/src/sdp/lookahead.h:67: inbetween ==> between, in between
    data/exonerate-2.4.0/src/model/ner.test.c:41: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.test.c:49: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.test.c:55: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.test.c:59: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.test.c:63: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.test.c:64: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.test.c:69: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.c:40: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.c:43: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.c:46: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.c:48: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.c:57: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.c:111: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.h:42: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.h:42: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.h:43: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.h:43: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.h:44: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.h:44: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.h:45: nd ==> and, 2nd
    data/exonerate-2.4.0/src/model/ner.h:46: nd ==> and, 2nd
    data/exonerate-2.4.0/src/hub/analysis.c:169: comparision ==> comparison
    data/exonerate-2.4.0/src/hub/analysis.c:1316: impelemented ==> implemented
    data/exonerate-2.4.0/src/hub/bsam.c:121: preceeded ==> preceded, proceeded
    data/exonerate-2.4.0/src/util/fastanrdb.c:33: nd ==> and, 2nd
    data/exonerate-2.4.0/src/util/fastanrdb.c:38: nd ==> and, 2nd
    data/exonerate-2.4.0/src/util/fastanrdb.c:41: nd ==> and, 2nd
    data/exonerate-2.4.0/src/util/fastanrdb.c:46: nd ==> and, 2nd
    data/exonerate-2.4.0/src/util/fastanrdb.c:71: nd ==> and, 2nd
    data/exonerate-2.4.0/src/util/fastanrdb.c:75: nd ==> and, 2nd
    data/exonerate-2.4.0/test/ipcress/ipcress.simple.test.sh:33: unexpectely ==> unexpectedly
    data/exonerate-2.4.0/test/util/fastatranslate.test.sh:22: Extraced ==> Extracted
    data/exonerate-2.4.0/test/util/fastatranslate.test.sh:24: tranlation ==> translation
    data/exonerate-2.4.0/test/util/fastatranslate.test.sh:31: Tranlated ==> Translated
    data/exonerate-2.4.0/test/util/fastatranslate.test.sh:33: tranlate ==> translate
    data/exonerate-2.4.0/debian/manpages/fastaoverlap.1:115: avanced ==> advanced
    data/exonerate-2.4.0/debian/patches/manpages.patch:13: idiosyncracies ==> idiosyncrasies
    data/exonerate-2.4.0/debian/patches/spelling.patch:11: Incompatable ==> Incompatible
    data/exonerate-2.4.0/debian/patches/spelling.patch:22: ommitted ==> omitted
    data/exonerate-2.4.0/debian/patches/spelling.patch:29: usin ==> using
    data/exonerate-2.4.0/debian/patches/spelling.patch:33: simliar ==> similar
    data/exonerate-2.4.0/debian/patches/spelling.patch:42: ALGORITM ==> ALGORITHM
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/exonerate.1:37: idiosyncracies ==> idiosyncrasies
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/exonerate.1:81: transistion ==> transition
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/exonerate.1:275: ammount ==> amount
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/exonerate.1:382: simliar ==> similar
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/exonerate.1:409: alignemnt ==> alignment
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/exonerate.1:764: ALGORITM ==> ALGORITHM
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/exonerate.1:1386: distrubuted ==> distributed
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/exonerate-server.1:265: ommitted ==> omitted
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/exonerate-server.1:458: distrubuted ==> distributed
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/fastautils.1:87: distrubuted ==> distributed
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/ipcress.1:233: Specifiy ==> Specify
    data/exonerate-2.4.0/.pc/manpages.patch/doc/man/man1/ipcress.1:270: distrubuted ==> distributed
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:117: Incompatable ==> Incompatible
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:434: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:438: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:440: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:442: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:444: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:445: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:446: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:448: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:455: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:464: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:466: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:468: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:470: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:480: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/src/database/dataset.c:482: ba ==> by, be
    data/exonerate-2.4.0/.pc/spelling.patch/doc/man/man1/exonerate-server.1:264: ommitted ==> omitted
    data/exonerate-2.4.0/.pc/spelling.patch/doc/man/man1/exonerate-server.1:457: distrubuted ==> distributed
    data/exonerate-2.4.0/.pc/spelling.patch/doc/man/man1/exonerate.1:36: idiosyncracies ==> idiosyncrasies
    data/exonerate-2.4.0/.pc/spelling.patch/doc/man/man1/exonerate.1:80: transistion ==> transition
    data/exonerate-2.4.0/.pc/spelling.patch/doc/man/man1/exonerate.1:274: ammount ==> amount
    data/exonerate-2.4.0/.pc/spelling.patch/doc/man/man1/exonerate.1:381: simliar ==> similar
    data/exonerate-2.4.0/.pc/spelling.patch/doc/man/man1/exonerate.1:408: alignemnt ==> alignment
    data/exonerate-2.4.0/.pc/spelling.patch/doc/man/man1/exonerate.1:763: ALGORITM ==> ALGORITHM
    data/exonerate-2.4.0/.pc/spelling.patch/doc/man/man1/exonerate.1:1385: distrubuted ==> distributed
    data/exonerate-2.4.0/.pc/manpagesyntax.patch/doc/man/man1/exonerate-server.1:457: distrubuted ==> distributed
    data/exonerate-2.4.0/.pc/manpagesyntax.patch/doc/man/man1/exonerate.1:36: idiosyncracies ==> idiosyncrasies
    data/exonerate-2.4.0/.pc/manpagesyntax.patch/doc/man/man1/exonerate.1:80: transistion ==> transition
    data/exonerate-2.4.0/.pc/manpagesyntax.patch/doc/man/man1/exonerate.1:274: ammount ==> amount
    data/exonerate-2.4.0/.pc/manpagesyntax.patch/doc/man/man1/exonerate.1:408: alignemnt ==> alignment
    data/exonerate-2.4.0/.pc/manpagesyntax.patch/doc/man/man1/exonerate.1:1385: distrubuted ==> distributed
    data/exonerate-2.4.0/.pc/manpagesyntax.patch/doc/man/man1/fastautils.1:84: distrubuted ==> distributed
    data/exonerate-2.4.0/.pc/manpagesyntax.patch/doc/man/man1/ipcress.1:232: Specifiy ==> Specify
    data/exonerate-2.4.0/.pc/manpagesyntax.patch/doc/man/man1/ipcress.1:269: distrubuted ==> distributed