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	gui/MyImageImportDialog.h gui/ShowCTFResultsPanel.h \
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	gui/PickingResultsDisplayPanel.h gui/MyRunProfilesPanel.h \
	gui/MyAddRunCommandDialog.h gui/MyNewProjectWizard.h \
	gui/MyNewRefinementPackageWizard.h gui/MyResultsPanel.h \
	gui/MyAssetsPanel.h gui/ActionsPanelSpa.h gui/ActionsPanelTm.h \
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	gui/MyParticlePositionExportDialog.h \
	gui/MyFrealignExportDialog.h gui/MyRelionExportDialog.h \
	gui/MyRefinementPackageAssetPanel.h gui/MyRenameDialog.h \
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	gui/Generate3DPanel.h gui/AutoRefine3dPanel.h \
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	gui/AngularDistributionPlotPanel.h gui/AlignMoviesPanel.h \
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	gui/MyMovieAssetPanel.h gui/MovieImportDialog.h \
	gui/MyRefine2DPanel.h gui/Refine2DResultsPanel.h \
	gui/ClassificationPlotPanel.h \
	gui/ClassumSelectionCopyFromDialog.h gui/MyOverviewPanel.h \
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	gui/ImportRefinementPackageWizard.h gui/AbInitioPlotPanel.h \
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	gui/ExportRefinementPackageWizard.h \
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	gui/Sharpen3DPanel.h gui/PlotCurvePanel.h \
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	gui/RefineCTFPanel.h gui/ShowTemplateMatchResultsPanel.h \
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	gui/icons/results_icon.cpp gui/icons/settings_icon.cpp \
	gui/icons/particle_position_icon.cpp gui/icons/virus_icon.cpp \
	gui/icons/refinement_package_icon.cpp gui/icons/growth.cpp \
	gui/icons/run_profiles_icon.cpp gui/icons/open_eye_icon_20.cpp \
	gui/icons/checked_checkbox_icon_20.cpp \
	gui/icons/unchecked_checkbox_icon_20.cpp \
	gui/icons/checked_checkbox_eye_icon_20.cpp \
	gui/icons/unchecked_checkbox_eye_icon_20.cpp \
	gui/icons/dlp_alignment.cpp gui/icons/ctffind_definitions.cpp \
	gui/icons/ctffind_diagnostic_image.cpp \
	gui/icons/ctffind_example_1dfit.cpp \
	gui/icons/niko_picture1.cpp gui/icons/niko_picture2.cpp \
	gui/icons/2d_classification_icon.cpp \
	gui/icons/classification_infotext1.cpp \
	gui/icons/classification_infotext2.cpp \
	gui/icons/classification_infotext3.cpp \
	gui/icons/classification_infotext4.cpp \
	gui/icons/display_auto_icon.cpp gui/icons/display_fft_icon.cpp \
	gui/icons/display_global_icon.cpp \
	gui/icons/display_histogram_icon.cpp \
	gui/icons/display_invert_icon.cpp \
	gui/icons/display_local_icon.cpp \
	gui/icons/display_manual_icon.cpp \
	gui/icons/display_next_icon.cpp \
	gui/icons/display_open_icon.cpp \
	gui/icons/display_previous_disabled_icon.cpp \
	gui/icons/display_previous_icon.cpp \
	gui/icons/display_refresh_icon.cpp \
	gui/icons/display_high_quality_icon.cpp \
	gui/icons/add_file_icon.cpp gui/icons/delete_file_icon.cpp \
	gui/icons/cisTEM_logo_800.cpp gui/icons/show_text.cpp \
	gui/icons/tool_icon.cpp gui/icons/window_plus_icon_16.cpp \
	gui/icons/abinitio_icon.cpp gui/icons/manual_refine_icon.cpp \
	gui/icons/generate3d_icon.cpp gui/icons/sharpen_map_icon.cpp \
	gui/icons/show_angles.cpp gui/icons/small_save_icon.cpp \
	gui/icons/cisTEM_beta_logo_800.cpp \
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	programs/console_test/hiv_images_shift_noise_80x80x10.cpp \
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noinst_HEADERS = core/asset_group.h core/core_headers.h core/defines.h \
	core/functions.h core/image.h core/mrc_file.h \
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	core/assets.h core/socket_codes.h core/userinput.h \
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	core/empirical_distribution.h core/resolution_statistics.h \
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	core/run_profile.h core/run_profile_manager.h \
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	core/downhill_simplex.h core/brute_force_search.h \
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	core/classification.h core/classification_selection.h \
	core/basic_star_file_reader.h core/rle3d.h \
	core/angular_distribution_histogram.h \
	core/local_resolution_estimator.h core/cistem_parameters.h \
	core/cistem_star_file_reader.h core/socket_communicator.h \
	core/template_matching.h core/json/json_defs.h \
	core/json/jsonval.h core/json/jsonreader.h \
	core/json/jsonwriter.h core/stopwatch.h core/ccl3d.h \
	core/eer_file.h gui/job_panel.h gui/gui_functions.h \
	gui/ResultsDataViewListCtrl.h gui/BitmapPanel.h \
	gui/PickingBitmapPanel.h gui/my_controls.h \
	gui/UnblurResultsPanel.h gui/CTF1DPanel.h \
	gui/MyAssetPanelParent.h gui/MyImageAssetPanel.h \
	gui/MyParticlePositionAssetPanel.h gui/MyVolumeAssetPanel.h \
	gui/MyVolumeImportDialog.h gui/MyMovieFilterDialog.h \
	gui/MyImageImportDialog.h gui/ShowCTFResultsPanel.h \
	gui/FindCTFPanel.h gui/FindParticlesPanel.h \
	gui/MyMovieAlignResultsPanel.h gui/MyFindCTFResultsPanel.h \
	gui/PickingResultsDisplayPanel.h gui/MyRunProfilesPanel.h \
	gui/MyAddRunCommandDialog.h gui/MyNewProjectWizard.h \
	gui/MyNewRefinementPackageWizard.h gui/MyResultsPanel.h \
	gui/MyAssetsPanel.h gui/ActionsPanelSpa.h gui/ActionsPanelTm.h \
	gui/MySettingsPanel.h gui/PickingResultsPanel.h \
	gui/MyParticlePositionExportDialog.h \
	gui/MyFrealignExportDialog.h gui/MyRelionExportDialog.h \
	gui/MyRefinementPackageAssetPanel.h gui/MyRenameDialog.h \
	gui/MyVolumeChooserDialog.h gui/MyRefine3DPanel.h \
	gui/Generate3DPanel.h gui/AutoRefine3dPanel.h \
	gui/DisplayRefinementResultsPanel.h gui/PopupTextDialog.h \
	gui/PlotFSCPanel.h gui/MyFSCPanel.h \
	gui/MyRefinementResultsPanel.h \
	gui/AngularDistributionPlotPanel.h gui/AlignMoviesPanel.h \
	gui/ErrorDialog.h gui/MainFrame.h gui/mathplot.h \
	gui/MyMovieAssetPanel.h gui/MovieImportDialog.h \
	gui/MyRefine2DPanel.h gui/Refine2DResultsPanel.h \
	gui/ClassificationPlotPanel.h \
	gui/ClassumSelectionCopyFromDialog.h gui/MyOverviewPanel.h \
	gui/DisplayPanel.h gui/ProjectX_gui.h gui/gui_globals.h \
	gui/ImportRefinementPackageWizard.h gui/AbInitioPlotPanel.h \
	gui/AbInitio3DPanel.h gui/AssetPickerComboPanel.h \
	gui/ExportRefinementPackageWizard.h \
	gui/RefinementParametersDialog.h gui/LargeAngularPlotDialog.h \
	gui/Sharpen3DPanel.h gui/PlotCurvePanel.h \
	gui/MatchTemplatePanel.h gui/DistributionPlotDialog.h \
	gui/RefineCTFPanel.h gui/ShowTemplateMatchResultsPanel.h \
	gui/MyExperimentalPanel.h gui/MatchTemplateResultsPanel.h \
	gui/MatchTemplatePanel.h gui/RefineTemplatePanel.h \
	gui/icons/action_icon.cpp gui/icons/assets_icon.cpp \
	gui/icons/ctf_icon.cpp gui/icons/image_icon.cpp \
	gui/icons/movie_align_icon.cpp gui/icons/movie_icon.cpp \
	gui/icons/overview_icon.cpp gui/icons/results_icon.cpp \
	gui/icons/settings_icon.cpp \
	gui/icons/particle_position_icon.cpp gui/icons/virus_icon.cpp \
	gui/icons/refinement_package_icon.cpp gui/icons/growth.cpp \
	gui/icons/run_profiles_icon.cpp gui/icons/open_eye_icon_20.cpp \
	gui/icons/checked_checkbox_icon_20.cpp \
	gui/icons/unchecked_checkbox_icon_20.cpp \
	gui/icons/checked_checkbox_eye_icon_20.cpp \
	gui/icons/unchecked_checkbox_eye_icon_20.cpp \
	gui/icons/dlp_alignment.cpp gui/icons/ctffind_definitions.cpp \
	gui/icons/ctffind_diagnostic_image.cpp \
	gui/icons/ctffind_example_1dfit.cpp \
	gui/icons/niko_picture1.cpp gui/icons/niko_picture2.cpp \
	gui/icons/2d_classification_icon.cpp \
	gui/icons/classification_infotext1.cpp \
	gui/icons/classification_infotext2.cpp \
	gui/icons/classification_infotext3.cpp \
	gui/icons/classification_infotext4.cpp \
	gui/icons/display_auto_icon.cpp gui/icons/display_fft_icon.cpp \
	gui/icons/display_global_icon.cpp \
	gui/icons/display_histogram_icon.cpp \
	gui/icons/display_invert_icon.cpp \
	gui/icons/display_local_icon.cpp \
	gui/icons/display_manual_icon.cpp \
	gui/icons/display_next_icon.cpp \
	gui/icons/display_open_icon.cpp \
	gui/icons/display_previous_disabled_icon.cpp \
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	gui/icons/delete_file_icon.cpp gui/icons/cisTEM_logo_800.cpp \
	gui/icons/show_text.cpp gui/icons/tool_icon.cpp \
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	gui/icons/manual_refine_icon.cpp gui/icons/generate3d_icon.cpp \
	gui/icons/sharpen_map_icon.cpp gui/icons/show_angles.cpp \
	gui/icons/small_save_icon.cpp \
	gui/icons/cisTEM_beta_logo_800.cpp \
	gui/icons/cisTEM_beta_logo_300.cpp gui/icons/up_arrow.cpp \
	gui/icons/down_arrow.cpp gui/icons/VSV_startup_800.cpp \
	gui/icons/vsv_sharpening.cpp gui/icons/refine_ctf_icon.cpp \
	gui/icons/refine_template_icon.cpp \
	programs/console_test/hiv_image_80x80x1.cpp \
	programs/console_test/hiv_images_shift_noise_80x80x10.cpp \
	programs/console_test/sine_128x128x1.cpp \
	gui/icons/match_template_icon.cpp $(am__append_1) \
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noinst_LIBRARIES = libcore.a libguicore.a $(am__append_7)
@ENABLEGPU_AM_TRUE@libgpucore_a_SOURCES = gpu/Histogram.cu \
@ENABLEGPU_AM_TRUE@                             gpu/TemplateMatchingCore.cu \
@ENABLEGPU_AM_TRUE@                             gpu/DeviceManager.cu \
@ENABLEGPU_AM_TRUE@                             gpu/GpuImage.cu

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@ENABLEGPU_AM_TRUE@libgpucore_a_LIBADD = gpu/gpudevicecode.o
@ENABLEGPU_AM_TRUE@libgpucore_a_AR = $(NVCC) $(CUDA_CXXFLAGS) -lib -o
libcore_a_SOURCES = core/functions.cpp core/globals.cpp \
	core/randomnumbergenerator.cpp core/userinput.cpp \
	core/angles_and_shifts.cpp core/parameter_constraints.cpp \
	core/assets.cpp core/asset_group.cpp core/curve.cpp \
	core/image.cpp core/electron_dose.cpp core/matrix.cpp \
	core/symmetry_matrix.cpp core/abstract_image_file.cpp \
	core/mrc_header.cpp core/mrc_file.cpp core/tiff_file.cpp \
	core/dm_file.cpp core/image_file.cpp core/sqlite/sqlite3.c \
	core/database.cpp core/project.cpp core/reconstruct_3d.cpp \
	core/reconstructed_volume.cpp core/resolution_statistics.cpp \
	core/particle.cpp core/job_packager.cpp core/job_tracker.cpp \
	core/run_command.cpp core/run_profile.cpp \
	core/run_profile_manager.cpp core/myapp.cpp \
	core/empirical_distribution.cpp core/ctf.cpp \
	core/numeric_text_file.cpp core/progressbar.cpp \
	core/downhill_simplex.cpp core/brute_force_search.cpp \
	core/va04.cpp core/conjugate_gradient.cpp \
	core/euler_search.cpp core/frealign_parameter_file.cpp \
	core/basic_star_file_reader.cpp core/refinement_package.cpp \
	core/refinement.cpp core/classification.cpp \
	core/particle_finder.cpp core/classification_selection.cpp \
	core/rle3d.cpp core/angular_distribution_histogram.cpp \
	core/local_resolution_estimator.cpp core/cistem_parameters.cpp \
	core/cistem_star_file_reader.cpp core/socket_communicator.cpp \
	core/json/jsonval.cpp core/json/jsonreader.cpp \
	core/json/jsonwriter.cpp core/stopwatch.cpp core/ccl3d.cpp \
	core/template_matching.cpp core/eer_file.cpp $(am__append_8)
libcore_a_CXXFLAGS = $(WX_CPPFLAGS_BASE)
libcore_a_CPPFLAGS = $(WX_CPPFLAGS_BASE)
libguicore_a_SOURCES = core/gui_job_controller.cpp
libguicore_a_CXXFLAGS = $(WX_CPPFLAGS)
libguicore_a_CPPFLAGS = $(WX_CPPFLAGS)
cisTEM_SOURCES = programs/projectx/projectx.cpp gui/gui_globals.cpp \
	gui/MyFSCPanel.cpp gui/MyRefinementResultsPanel.cpp \
	gui/PlotFSCPanel.cpp gui/gui_functions.cpp gui/my_controls.cpp \
	gui/MyRenameDialog.cpp gui/BitmapPanel.cpp \
	gui/PickingBitmapPanel.cpp gui/job_panel.cpp \
	gui/ProjectX_gui.cpp gui/ResultsDataViewListCtrl.cpp \
	gui/MyMovieFilterDialog.cpp gui/MainFrame.cpp \
	gui/MyAssetPanelParent.cpp gui/MyMovieAssetPanel.cpp \
	gui/MyImageAssetPanel.cpp gui/MyParticlePositionAssetPanel.cpp \
	gui/MyVolumeChooserDialog.cpp gui/MovieImportDialog.cpp \
	gui/MyImageImportDialog.cpp gui/MyVolumeImportDialog.cpp \
	gui/ErrorDialog.cpp gui/AlignMoviesPanel.cpp \
	gui/MyRunProfilesPanel.cpp gui/mathplot.cpp \
	gui/MyMovieAlignResultsPanel.cpp gui/MyFindCTFResultsPanel.cpp \
	gui/PickingResultsPanel.cpp gui/MyAddRunCommandDialog.cpp \
	gui/MyNewProjectWizard.cpp \
	gui/MyNewRefinementPackageWizard.cpp \
	gui/UnblurResultsPanel.cpp gui/ShowCTFResultsPanel.cpp \
	gui/PickingResultsDisplayPanel.cpp gui/CTF1DPanel.cpp \
	gui/FindCTFPanel.cpp gui/FindParticlesPanel.cpp \
	gui/MyVolumeAssetPanel.cpp gui/MyResultsPanel.cpp \
	gui/MyAssetsPanel.cpp gui/ActionsPanelSpa.cpp \
	gui/ActionsPanelTm.cpp gui/MySettingsPanel.cpp \
	gui/MyParticlePositionExportDialog.cpp \
	gui/MyFrealignExportDialog.cpp gui/MyRelionExportDialog.cpp \
	gui/MyRefinementPackageAssetPanel.cpp gui/MyRefine3DPanel.cpp \
	gui/MyRefine2DPanel.cpp gui/ClassificationPlotPanel.cpp \
	gui/AbInitioPlotPanel.cpp gui/Refine2DResultsPanel.cpp \
	gui/AngularDistributionPlotPanel.cpp core/particle_finder.cpp \
	gui/DisplayPanel.cpp gui/ClassumSelectionCopyFromDialog.cpp \
	gui/MyOverviewPanel.cpp gui/AbInitio3DPanel.cpp \
	gui/AssetPickerComboPanel.cpp gui/AutoRefine3dPanel.cpp \
	gui/DisplayRefinementResultsPanel.cpp \
	gui/ImportRefinementPackageWizard.cpp gui/PopupTextDialog.cpp \
	gui/ExportRefinementPackageWizard.cpp gui/Generate3DPanel.cpp \
	gui/LargeAngularPlotDialog.cpp \
	gui/RefinementParametersDialog.cpp gui/Sharpen3DPanel.cpp \
	gui/PlotCurvePanel.cpp gui/DistributionPlotDialog.cpp \
	gui/RefineCTFPanel.cpp gui/ShowTemplateMatchResultsPanel.cpp \
	gui/MatchTemplatePanel.cpp gui/MatchTemplateResultsPanel.cpp \
	gui/RefineTemplatePanel.cpp \
	gui/CombineRefinementPackagesWizard.cpp gui $(am__append_9)
cisTEM_CXXFLAGS = $(WX_CPPFLAGS)
cisTEM_CPPFLAGS = $(WX_CPPFLAGS)
cisTEM_LDADD = libguicore.a libcore.a $(WX_LIBS)
gui_test_SOURCES = programs/gui_test/gui_test.cpp gui/PlotCurvePanel.cpp gui/mathplot.cpp
gui_test_CXXFLAGS = $(WX_CPPFLAGS)
gui_test_CPPFLAGS = $(WX_CPPFLAGS)
gui_test_LDADD = libguicore.a libcore.a $(WX_LIBS)
cisTEM_job_control_SOURCES = programs/guix_job_control/guix_job_control.cpp 
cisTEM_job_control_CXXFLAGS = $(WX_CPPFLAGS_BASE)
cisTEM_job_control_CPPFLAGS = $(WX_CPPFLAGS_BASE)
cisTEM_job_control_LDADD = libcore.a $(WX_LIBS_BASE)
console_test_SOURCES = programs/console_test/console_test.cpp 
console_test_CXXFLAGS = $(WX_CPPFLAGS_BASE)
console_test_CPPFLAGS = $(WX_CPPFLAGS_BASE)
console_test_LDADD = libcore.a $(WX_LIBS_BASE)
unblur_SOURCES = programs/unblur/unblur.cpp
unblur_CXXFLAGS = $(WX_CPPFLAGS_BASE)
unblur_CPPFLAGS = $(WX_CPPFLAGS_BASE)
unblur_LDADD = libcore.a $(LIBS) $(WX_LIBS_BASE)
applyctf_SOURCES = programs/applyctf/applyctf.cpp
applyctf_CXXFLAGS = $(WX_CPPFLAGS_BASE)
applyctf_CPPFLAGS = $(WX_CPPFLAGS_BASE)
applyctf_LDADD = libcore.a $(WX_LIBS_BASE)
ctffind_SOURCES = programs/ctffind/ctffind.cpp
ctffind_CXXFLAGS = $(WX_CPPFLAGS_BASE)
ctffind_CPPFLAGS = $(WX_CPPFLAGS_BASE)
ctffind_LDADD = libcore.a $(WX_LIBS_BASE)
reconstruct3d_SOURCES = programs/reconstruct3d/reconstruct3d.cpp
reconstruct3d_CXXFLAGS = $(WX_CPPFLAGS_BASE)
reconstruct3d_CPPFLAGS = $(WX_CPPFLAGS_BASE)
reconstruct3d_LDADD = libcore.a $(WX_LIBS_BASE)
merge3d_SOURCES = programs/merge3d/merge3d.cpp
merge3d_CXXFLAGS = $(WX_CPPFLAGS_BASE)
merge3d_CPPFLAGS = $(WX_CPPFLAGS_BASE)
merge3d_LDADD = libcore.a $(WX_LIBS_BASE)
calc_occ_SOURCES = programs/calc_occ/calc_occ.cpp
calc_occ_CXXFLAGS = $(WX_CPPFLAGS_BASE)
calc_occ_CPPFLAGS = $(WX_CPPFLAGS_BASE)
calc_occ_LDADD = libcore.a $(WX_LIBS_BASE)
project3d_SOURCES = programs/project3d/project3d.cpp
project3d_CXXFLAGS = $(WX_CPPFLAGS_BASE)
project3d_CPPFLAGS = $(WX_CPPFLAGS_BASE)
project3d_LDADD = libcore.a $(WX_LIBS_BASE)
refine3d_SOURCES = programs/refine3d/refine3d.cpp
refine3d_CXXFLAGS = $(WX_CPPFLAGS_BASE)
refine3d_CPPFLAGS = $(WX_CPPFLAGS_BASE)
refine3d_LDADD = libcore.a $(WX_LIBS_BASE)
remove_outlier_pixels_SOURCES = programs/remove_outlier_pixels/remove_outlier_pixels.cpp
remove_outlier_pixels_CXXFLAGS = $(WX_CPPFLAGS_BASE)
remove_outlier_pixels_CPPFLAGS = $(WX_CPPFLAGS_BASE)
remove_outlier_pixels_LDADD = libcore.a $(WX_LIBS_BASE)
resize_SOURCES = programs/resize/resize.cpp
resize_CXXFLAGS = $(WX_CPPFLAGS_BASE)
resize_CPPFLAGS = $(WX_CPPFLAGS_BASE)
resize_LDADD = libcore.a $(WX_LIBS_BASE)
resample_SOURCES = programs/resample/resample.cpp
resample_CXXFLAGS = $(WX_CPPFLAGS_BASE)
resample_CPPFLAGS = $(WX_CPPFLAGS_BASE)
resample_LDADD = libcore.a $(WX_LIBS_BASE)
estimate_dataset_ssnr_SOURCES = programs/estimate_dataset_ssnr/estimate_dataset_ssnr.cpp
estimate_dataset_ssnr_CXXFLAGS = $(WX_CPPFLAGS_BASE)
estimate_dataset_ssnr_CPPFLAGS = $(WX_CPPFLAGS_BASE)
estimate_dataset_ssnr_LDADD = libcore.a $(WX_LIBS_BASE)
reset_mrc_header_SOURCES = programs/reset_mrc_header/reset_mrc_header.cpp
reset_mrc_header_CXXFLAGS = $(WX_CPPFLAGS_BASE)
reset_mrc_header_CPPFLAGS = $(WX_CPPFLAGS_BASE)
reset_mrc_header_LDADD = libcore.a $(WX_LIBS_BASE)
find_particles_SOURCES = programs/find_particles/find_particles.cpp
find_particles_CXXFLAGS = $(WX_CPPFLAGS_BASE)
find_particles_CPPFLAGS = $(WX_CPPFLAGS_BASE)
find_particles_LDADD = libcore.a $(WX_LIBS_BASE)
montage_SOURCES = programs/montage/montage.cpp
montage_CXXFLAGS = $(WX_CPPFLAGS_BASE)
montage_CPPFLAGS = $(WX_CPPFLAGS_BASE)
montage_LDADD = libcore.a $(WX_LIBS_BASE)
extract_particles_SOURCES = programs/extract_particles/extract_particles.cpp
extract_particles_CXXFLAGS = $(WX_CPPFLAGS_BASE)
extract_particles_CPPFLAGS = $(WX_CPPFLAGS_BASE)
extract_particles_LDADD = libcore.a $(WX_LIBS_BASE)
sum_all_mrc_files_SOURCES = programs/sum_all_mrc_files/sum_all_mrc_files.cpp
sum_all_mrc_files_CXXFLAGS = $(WX_CPPFLAGS_BASE)
sum_all_mrc_files_CPPFLAGS = $(WX_CPPFLAGS_BASE)
sum_all_mrc_files_LDADD = libcore.a $(WX_LIBS_BASE)
sum_all_eer_files_SOURCES = programs/sum_all_eer_files/sum_all_eer_files.cpp
sum_all_eer_files_CXXFLAGS = $(WX_CPPFLAGS_BASE)
sum_all_eer_files_CPPFLAGS = $(WX_CPPFLAGS_BASE)
sum_all_eer_files_LDADD = libcore.a $(WX_LIBS_BASE)
sum_all_tif_files_SOURCES = programs/sum_all_tif_files/sum_all_tif_files.cpp
sum_all_tif_files_CXXFLAGS = $(WX_CPPFLAGS_BASE)
sum_all_tif_files_CPPFLAGS = $(WX_CPPFLAGS_BASE)
sum_all_tif_files_LDADD = libcore.a $(WX_LIBS_BASE)
apply_gain_ref_SOURCES = programs/apply_gain_ref/apply_gain_ref.cpp
apply_gain_ref_CXXFLAGS = $(WX_CPPFLAGS_BASE)
apply_gain_ref_CPPFLAGS = $(WX_CPPFLAGS_BASE)
apply_gain_ref_LDADD = libcore.a $(WX_LIBS_BASE)
scale_with_mask_SOURCES = programs/scale_with_mask/scale_with_mask.cpp
scale_with_mask_CXXFLAGS = $(WX_CPPFLAGS_BASE)
scale_with_mask_CPPFLAGS = $(WX_CPPFLAGS_BASE)
scale_with_mask_LDADD = libcore.a $(WX_LIBS_BASE)
refine2d_SOURCES = programs/refine2d/refine2d.cpp
refine2d_CXXFLAGS = $(WX_CPPFLAGS_BASE)
refine2d_CPPFLAGS = $(WX_CPPFLAGS_BASE)
refine2d_LDADD = libcore.a $(WX_LIBS_BASE)
merge2d_SOURCES = programs/merge2d/merge2d.cpp
merge2d_CXXFLAGS = $(WX_CPPFLAGS_BASE)
merge2d_CPPFLAGS = $(WX_CPPFLAGS_BASE)
merge2d_LDADD = libcore.a $(WX_LIBS_BASE)
mag_distortion_correct_SOURCES = programs/mag_distortion_correct/mag_distortion_correct.cpp
mag_distortion_correct_CXXFLAGS = $(WX_CPPFLAGS_BASE)
mag_distortion_correct_CPPFLAGS = $(WX_CPPFLAGS_BASE)
mag_distortion_correct_LDADD = libcore.a $(WX_LIBS_BASE)
apply_mask_SOURCES = programs/apply_mask/apply_mask.cpp
apply_mask_CXXFLAGS = $(WX_CPPFLAGS_BASE)
apply_mask_CPPFLAGS = $(WX_CPPFLAGS_BASE)
apply_mask_LDADD = libcore.a $(WX_LIBS_BASE)
convert_tif_to_mrc_SOURCES = programs/convert_tif_to_mrc/convert_tif_to_mrc.cpp
convert_tif_to_mrc_CXXFLAGS = $(WX_CPPFLAGS_BASE)
convert_tif_to_mrc_CPPFLAGS = $(WX_CPPFLAGS_BASE)
convert_tif_to_mrc_LDADD = libcore.a $(WX_LIBS_BASE)
remove_inf_and_nan_SOURCES = programs/remove_inf_and_nan/remove_inf_and_nan.cpp
remove_inf_and_nan_CXXFLAGS = $(WX_CPPFLAGS_BASE)
remove_inf_and_nan_CPPFLAGS = $(WX_CPPFLAGS_BASE)
remove_inf_and_nan_LDADD = libcore.a $(WX_LIBS_BASE)
make_orth_views_SOURCES = programs/make_orth_views/make_orth_views.cpp
make_orth_views_CXXFLAGS = $(WX_CPPFLAGS_BASE)
make_orth_views_CPPFLAGS = $(WX_CPPFLAGS_BASE)
make_orth_views_LDADD = libcore.a $(WX_LIBS_BASE)
sharpen_map_SOURCES = programs/sharpen_map/sharpen_map.cpp
sharpen_map_CXXFLAGS = $(WX_CPPFLAGS_BASE)
sharpen_map_CPPFLAGS = $(WX_CPPFLAGS_BASE)
sharpen_map_LDADD = libcore.a $(WX_LIBS_BASE)
calculate_fsc_SOURCES = programs/calculate_fsc/calculate_fsc.cpp
calculate_fsc_CXXFLAGS = $(WX_CPPFLAGS_BASE)
calculate_fsc_CPPFLAGS = $(WX_CPPFLAGS_BASE)
calculate_fsc_LDADD = libcore.a $(WX_LIBS_BASE)
make_size_map_SOURCES = programs/make_size_map/make_size_map.cpp
make_size_map_CXXFLAGS = $(WX_CPPFLAGS_BASE)
make_size_map_CPPFLAGS = $(WX_CPPFLAGS_BASE)
make_size_map_LDADD = libcore.a $(WX_LIBS_BASE)
align_symmetry_SOURCES = programs/align_symmetry/align_symmetry.cpp
align_symmetry_CXXFLAGS = $(WX_CPPFLAGS_BASE)
align_symmetry_CPPFLAGS = $(WX_CPPFLAGS_BASE)
align_symmetry_LDADD = libcore.a $(WX_LIBS_BASE)
prepare_stack_SOURCES = programs/prepare_stack/prepare_stack.cpp
prepare_stack_CXXFLAGS = $(WX_CPPFLAGS_BASE)
prepare_stack_CPPFLAGS = $(WX_CPPFLAGS_BASE)
prepare_stack_LDADD = libcore.a $(WX_LIBS_BASE)
prepare_stack_classaverage_SOURCES = programs/prepare_stack_classaverage/prepare_stack_classaverage.cpp
prepare_stack_classaverage_CXXFLAGS = $(WX_CPPFLAGS_BASE)
prepare_stack_classaverage_CPPFLAGS = $(WX_CPPFLAGS_BASE)
prepare_stack_classaverage_LDADD = libcore.a $(WX_LIBS_BASE)
subtract_from_stack_SOURCES = programs/subtract_from_stack/subtract_from_stack.cpp
subtract_from_stack_CXXFLAGS = $(WX_CPPFLAGS_BASE)
subtract_from_stack_CPPFLAGS = $(WX_CPPFLAGS_BASE)
subtract_from_stack_LDADD = libcore.a $(WX_LIBS_BASE)
binarize_SOURCES = programs/binarize/binarize.cpp
binarize_CXXFLAGS = $(WX_CPPFLAGS_BASE)
binarize_CPPFLAGS = $(WX_CPPFLAGS_BASE)
binarize_LDADD = libcore.a $(WX_LIBS_BASE)
move_volume_xyz_SOURCES = programs/move_volume_xyz/move_volume_xyz.cpp
move_volume_xyz_CXXFLAGS = $(WX_CPPFLAGS_BASE)
move_volume_xyz_CPPFLAGS = $(WX_CPPFLAGS_BASE)
move_volume_xyz_LDADD = libcore.a $(WX_LIBS_BASE)
symmetry_expand_stack_and_par_SOURCES = programs/symmetry_expand_stack_and_par/symmetry_expand_stack_and_par.cpp
symmetry_expand_stack_and_par_CXXFLAGS = $(WX_CPPFLAGS_BASE)
symmetry_expand_stack_and_par_CPPFLAGS = $(WX_CPPFLAGS_BASE)
symmetry_expand_stack_and_par_LDADD = libcore.a $(WX_LIBS_BASE)
fft_SOURCES = programs/fft/fft.cpp
fft_CXXFLAGS = $(WX_CPPFLAGS_BASE)
fft_CPPFLAGS = $(WX_CPPFLAGS_BASE)    
fft_LDADD = libcore.a $(WX_LIBS_BASE)
local_resolution_SOURCES = programs/local_resolution/local_resolution.cpp
local_resolution_CXXFLAGS = $(WX_CPPFLAGS_BASE)
local_resolution_CPPFLAGS = $(WX_CPPFLAGS_BASE)
local_resolution_LDADD = libcore.a $(WX_LIBS_BASE)
local_resolution_finalize_SOURCES = programs/local_resolution/local_resolution_finalize.cpp
local_resolution_finalize_CXXFLAGS = $(WX_CPPFLAGS_BASE)
local_resolution_finalize_CPPFLAGS = $(WX_CPPFLAGS_BASE)
local_resolution_finalize_LDADD = libcore.a $(WX_LIBS_BASE)
niko_test_SOURCES = programs/niko_test/niko_test.cpp
niko_test_CXXFLAGS = $(WX_CPPFLAGS_BASE)
niko_test_CPPFLAGS = $(WX_CPPFLAGS_BASE)
niko_test_LDADD = libcore.a $(WX_LIBS_BASE)
local_resolution_filter_SOURCES = programs/local_resolution_filter/local_resolution_filter.cpp
local_resolution_filter_CXXFLAGS = $(WX_CPPFLAGS_BASE)
local_resolution_filter_CPPFLAGS = $(WX_CPPFLAGS_BASE)
local_resolution_filter_LDADD = libcore.a $(WX_LIBS_BASE)
subtract_two_stacks_SOURCES = programs/subtract_two_stacks/subtract_two_stacks.cpp
subtract_two_stacks_CXXFLAGS = $(WX_CPPFLAGS_BASE)
subtract_two_stacks_CPPFLAGS = $(WX_CPPFLAGS_BASE)
subtract_two_stacks_LDADD = libcore.a $(WX_LIBS_BASE)
align_coordinates_SOURCES = programs/align_coordinates/align_coordinates.cpp
align_coordinates_CXXFLAGS = $(WX_CPPFLAGS_BASE)
align_coordinates_CPPFLAGS = $(WX_CPPFLAGS_BASE)
align_coordinates_LDADD = libcore.a $(WX_LIBS_BASE)
add_two_stacks_SOURCES = programs/add_two_stacks/add_two_stacks.cpp
add_two_stacks_CXXFLAGS = $(WX_CPPFLAGS_BASE)
add_two_stacks_CPPFLAGS = $(WX_CPPFLAGS_BASE)
add_two_stacks_LDADD = libcore.a $(WX_LIBS_BASE)
azimuthal_average_SOURCES = programs/azimuthal_average/azimuthal_average.cpp
azimuthal_average_CXXFLAGS = $(WX_CPPFLAGS_BASE)
azimuthal_average_CPPFLAGS = $(WX_CPPFLAGS_BASE)
azimuthal_average_LDADD = libcore.a $(WX_LIBS_BASE)
multiply_two_stacks_SOURCES = programs/multiply_two_stacks/multiply_two_stacks.cpp
multiply_two_stacks_CXXFLAGS = $(WX_CPPFLAGS_BASE)
multiply_two_stacks_CPPFLAGS = $(WX_CPPFLAGS_BASE)
multiply_two_stacks_LDADD = libcore.a $(WX_LIBS_BASE)
divide_two_stacks_SOURCES = programs/divide_two_stacks/divide_two_stacks.cpp
divide_two_stacks_CXXFLAGS = $(WX_CPPFLAGS_BASE)
divide_two_stacks_CPPFLAGS = $(WX_CPPFLAGS_BASE)
divide_two_stacks_LDADD = libcore.a $(WX_LIBS_BASE)
invert_stack_SOURCES = programs/invert_stack/invert_stack.cpp
invert_stack_CXXFLAGS = $(WX_CPPFLAGS_BASE)
invert_stack_CPPFLAGS = $(WX_CPPFLAGS_BASE)
invert_stack_LDADD = libcore.a $(WX_LIBS_BASE)
convert_par_to_star_SOURCES = programs/convert_par_to_star/convert_par_to_star.cpp
convert_par_to_star_CXXFLAGS = $(WX_CPPFLAGS_BASE)
convert_par_to_star_CPPFLAGS = $(WX_CPPFLAGS_BASE)
convert_par_to_star_LDADD = libcore.a $(WX_LIBS_BASE)
find_dqe_SOURCES = programs/find_dqe/find_dqe.cpp
find_dqe_CXXFLAGS = $(WX_CPPFLAGS_BASE)
find_dqe_CPPFLAGS = $(WX_CPPFLAGS_BASE)
find_dqe_LDADD = libcore.a $(WX_LIBS_BASE)
combine_via_max_SOURCES = programs/combine_via_max/combine_via_max.cpp
combine_via_max_CXXFLAGS = $(WX_CPPFLAGS_BASE)
combine_via_max_CPPFLAGS = $(WX_CPPFLAGS_BASE)
combine_via_max_LDADD = libcore.a $(WX_LIBS_BASE)
refine_ctf_SOURCES = programs/refine_ctf/refine_ctf.cpp
refine_ctf_CXXFLAGS = $(WX_CPPFLAGS_BASE)
refine_ctf_CPPFLAGS = $(WX_CPPFLAGS_BASE)
refine_ctf_LDADD = libcore.a $(WX_LIBS_BASE)
estimate_beamtilt_SOURCES = programs/estimate_beamtilt/estimate_beamtilt.cpp
estimate_beamtilt_CXXFLAGS = $(WX_CPPFLAGS_BASE)
estimate_beamtilt_CPPFLAGS = $(WX_CPPFLAGS_BASE)
estimate_beamtilt_LDADD = libcore.a $(WX_LIBS_BASE)
remove_relion_stripes_SOURCES = programs/remove_relion_stripes/remove_relion_stripes.cpp
remove_relion_stripes_CXXFLAGS = $(WX_CPPFLAGS_BASE)
remove_relion_stripes_CPPFLAGS = $(WX_CPPFLAGS_BASE)
remove_relion_stripes_LDADD = libcore.a $(WX_LIBS_BASE)
warp_to_cistem_SOURCES = programs/warp_to_cistem/warp_to_cistem.cpp
warp_to_cistem_CXXFLAGS = $(WX_CPPFLAGS_BASE)
warp_to_cistem_CPPFLAGS = $(WX_CPPFLAGS_BASE)
warp_to_cistem_LDADD = libcore.a $(WX_LIBS_BASE)
create_mask_SOURCES = programs/create_mask/create_mask.cpp
create_mask_CXXFLAGS = $(WX_CPPFLAGS_BASE)
create_mask_CPPFLAGS = $(WX_CPPFLAGS_BASE)
create_mask_LDADD = libcore.a $(WX_LIBS_BASE)
invert_hand_SOURCES = programs/invert_hand/invert_hand.cpp
invert_hand_CXXFLAGS = $(WX_CPPFLAGS_BASE)
invert_hand_CPPFLAGS = $(WX_CPPFLAGS_BASE)
invert_hand_LDADD = libcore.a $(WX_LIBS_BASE)
append_stacks_SOURCES = programs/append_stacks/append_stacks.cpp
append_stacks_CXXFLAGS = $(WX_CPPFLAGS_BASE)
append_stacks_CPPFLAGS = $(WX_CPPFLAGS_BASE)
append_stacks_LDADD = libcore.a $(WX_LIBS_BASE)
convert_star_to_binary_SOURCES = programs/convert_star_to_binary/convert_star_to_binary.cpp
convert_star_to_binary_CXXFLAGS = $(WX_CPPFLAGS_BASE)
convert_star_to_binary_CPPFLAGS = $(WX_CPPFLAGS_BASE)
convert_star_to_binary_LDADD = libcore.a $(WX_LIBS_BASE)
convert_binary_to_star_SOURCES = programs/convert_binary_to_star/convert_binary_to_star.cpp
convert_binary_to_star_CXXFLAGS = $(WX_CPPFLAGS_BASE)
convert_binary_to_star_CPPFLAGS = $(WX_CPPFLAGS_BASE)
convert_binary_to_star_LDADD = libcore.a $(WX_LIBS_BASE)
convert_eer_to_mrc_SOURCES = programs/convert_eer_to_mrc/convert_eer_to_mrc.cpp
convert_eer_to_mrc_CXXFLAGS = $(WX_CPPFLAGS_BASE)
convert_eer_to_mrc_CPPFLAGS = $(WX_CPPFLAGS_BASE)
convert_eer_to_mrc_LDADD = libcore.a $(WX_LIBS_BASE)
normalize_stack_SOURCES = programs/normalize_stack/normalize_stack.cpp
normalize_stack_CXXFLAGS = $(WX_CPPFLAGS_BASE)
normalize_stack_CPPFLAGS = $(WX_CPPFLAGS_BASE)
normalize_stack_LDADD = libcore.a $(WX_LIBS_BASE)
print_stack_statistics_SOURCES = programs/print_stack_statistics/print_stack_statistics.cpp
print_stack_statistics_CXXFLAGS = $(WX_CPPFLAGS_BASE)
print_stack_statistics_CPPFLAGS = $(WX_CPPFLAGS_BASE)
print_stack_statistics_LDADD = libcore.a $(WX_LIBS_BASE)
combine_stacks_by_star_SOURCES = programs/combine_stacks_by_star/combine_stacks_by_star.cpp
combine_stacks_by_star_CXXFLAGS = $(WX_CPPFLAGS_BASE)
combine_stacks_by_star_CPPFLAGS = $(WX_CPPFLAGS_BASE)
combine_stacks_by_star_LDADD = libcore.a $(WX_LIBS_BASE)
@ENABLESAMPLES_AM_TRUE@samples_functional_testing_SOURCES = programs/samples/samples_functional_testing.cpp \
@ENABLESAMPLES_AM_TRUE@	programs/samples/common/helper_functions.cpp \
@ENABLESAMPLES_AM_TRUE@	programs/samples/common/embedded_test_file.cpp \
@ENABLESAMPLES_AM_TRUE@	programs/samples/common/numeric_test_file.cpp \
@ENABLESAMPLES_AM_TRUE@	programs/samples/0_simple/disk_io_image.cpp \
@ENABLESAMPLES_AM_TRUE@	$(am__append_10)
@ENABLESAMPLES_AM_TRUE@samples_functional_testing_CXXFLAGS = $(WX_CPPFLAGS_BASE)
@ENABLESAMPLES_AM_TRUE@samples_functional_testing_CPPFLAGS = $(WX_CPPFLAGS_BASE)
@ENABLEGPU_AM_FALSE@@ENABLESAMPLES_AM_TRUE@samples_functional_testing_LDADD = libcore.a $(WX_LIBS_BASE)
@ENABLEGPU_AM_TRUE@@ENABLESAMPLES_AM_TRUE@samples_functional_testing_LDADD = libgpucore.a libcore.a $(WX_LIBS_BASE) $(CUDA_LIBS)
match_template_SOURCES = programs/match_template/match_template.cpp
match_template_CXXFLAGS = $(WX_CPPFLAGS_BASE)
match_template_CPPFLAGS = $(WX_CPPFLAGS_BASE)
prepare_stack_matchtemplate_SOURCES = programs/prepare_stack_matchtemplate/prepare_stack_matchtemplate.cpp
prepare_stack_matchtemplate_CXXFLAGS = $(WX_CPPFLAGS_BASE)
prepare_stack_matchtemplate_CPPFLAGS = $(WX_CPPFLAGS_BASE)
prepare_stack_matchtemplate_LDADD = libcore.a $(WX_LIBS_BASE)
@ENABLEGPU_AM_FALSE@match_template_LDADD = libcore.a $(WX_LIBS_BASE)
@ENABLEGPU_AM_TRUE@match_template_LDADD = libgpucore.a libcore.a $(WX_LIBS_BASE) $(CUDA_LIBS)
make_template_result_SOURCES = programs/make_template_result/make_template_result.cpp
make_template_result_CXXFLAGS = $(WX_CPPFLAGS_BASE)
make_template_result_CPPFLAGS = $(WX_CPPFLAGS_BASE)
make_template_result_LDADD = libcore.a $(WX_LIBS_BASE)
simulate_SOURCES = programs/simulate/simulate.cpp programs/simulate/wave_function_propagator.cpp programs/simulate/scattering_potential.cpp
simulate_CXXFLAGS = $(WX_CPPFLAGS_BASE)
simulate_CPPFLAGS = $(WX_CPPFLAGS_BASE)
simulate_LDADD = libcore.a $(WX_LIBS_BASE)
sum_all_power_spectra_SOURCES = programs/sum_all_power_spectra/sum_all_power_spectra.cpp 
sum_all_power_spectra_CXXFLAGS = $(WX_CPPFLAGS_BASE)
sum_all_power_spectra_CPPFLAGS = $(WX_CPPFLAGS_BASE)
sum_all_power_spectra_LDADD = libcore.a $(WX_LIBS_BASE)
refine_template_SOURCES = programs/refine_template/refine_template.cpp
refine_template_CXXFLAGS = $(WX_CPPFLAGS_BASE)
refine_template_CPPFLAGS = $(WX_CPPFLAGS_BASE)
refine_template_LDADD = libcore.a $(WX_LIBS_BASE)
@EXPERIMENTAL_AM_TRUE@refine_template_dev_SOURCES = programs/refine_template_dev/refine_template_dev.cpp
@EXPERIMENTAL_AM_TRUE@refine_template_dev_CXXFLAGS = $(WX_CPPFLAGS_BASE)
@EXPERIMENTAL_AM_TRUE@refine_template_dev_CPPFLAGS = $(WX_CPPFLAGS_BASE)
@EXPERIMENTAL_AM_TRUE@refine_template_dev_LDADD = libcore.a $(WX_LIBS_BASE)
@ENABLEGPU_AM_TRUE@gpu_util_test_SUFFIXES = .cpp
@ENABLEGPU_AM_TRUE@gpu_util_test_SOURCES = programs/gpu_util_test/gpu_util_test.cpp
@ENABLEGPU_AM_TRUE@gpu_util_test_CXXFLAGS = $(WX_CPPFLAGS_BASE)
@ENABLEGPU_AM_TRUE@gpu_util_test_CPPFLAGS = $(WX_CPPFLAGS_BASE)
@ENABLEGPU_AM_TRUE@gpu_util_test_LDADD = libgpucore.a libcore.a $(WX_LIBS_BASE) $(CUDA_LIBS)
@ENABLEGPU_AM_TRUE@gpu_devices_SUFFIXES = .cpp
@ENABLEGPU_AM_TRUE@gpu_devices_SOURCES = programs/gpu_devices/gpu_devices.cpp
@ENABLEGPU_AM_TRUE@gpu_devices_CXXFLAGS = $(WX_CPPFLAGS_BASE)
@ENABLEGPU_AM_TRUE@gpu_devices_CPPFLAGS = $(WX_CPPFLAGS_BASE)
@ENABLEGPU_AM_TRUE@gpu_devices_LDADD = libgpucore.a libcore.a $(WX_LIBS_BASE) $(CUDA_LIBS)
all: all-am

.SUFFIXES:
.SUFFIXES: .c .cpp .cu .lo .o .obj
$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
	@for dep in $?; do \
	  case '$(am__configure_deps)' in \
	    *$$dep*) \
	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
	        && { if test -f $@; then exit 0; else break; fi; }; \
	      exit 1;; \
	  esac; \
	done; \
	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/Makefile'; \
	$(am__cd) $(top_srcdir) && \
	  $(AUTOMAKE) --gnu src/Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
	@case '$?' in \
	  *config.status*) \
	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
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calculate_fsc$(EXEEXT): $(calculate_fsc_OBJECTS) $(calculate_fsc_DEPENDENCIES) $(EXTRA_calculate_fsc_DEPENDENCIES) 
	@rm -f calculate_fsc$(EXEEXT)
	$(AM_V_CXXLD)$(calculate_fsc_LINK) $(calculate_fsc_OBJECTS) $(calculate_fsc_LDADD) $(LIBS)
programs/projectx/$(am__dirstamp):
	@$(MKDIR_P) programs/projectx
	@: > programs/projectx/$(am__dirstamp)
programs/projectx/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/projectx/$(DEPDIR)
	@: > programs/projectx/$(DEPDIR)/$(am__dirstamp)
programs/projectx/cisTEM-projectx.$(OBJEXT):  \
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gui/$(am__dirstamp):
	@$(MKDIR_P) gui
	@: > gui/$(am__dirstamp)
gui/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) gui/$(DEPDIR)
	@: > gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-gui_globals.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyFSCPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyRefinementResultsPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-PlotFSCPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-gui_functions.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-my_controls.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyRenameDialog.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-BitmapPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-PickingBitmapPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-job_panel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-ProjectX_gui.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-ResultsDataViewListCtrl.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyMovieFilterDialog.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MainFrame.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyAssetPanelParent.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyMovieAssetPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyImageAssetPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyParticlePositionAssetPanel.$(OBJEXT):  \
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gui/cisTEM-MyVolumeChooserDialog.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MovieImportDialog.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyImageImportDialog.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyVolumeImportDialog.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-ErrorDialog.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-AlignMoviesPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyRunProfilesPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-mathplot.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyMovieAlignResultsPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyFindCTFResultsPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-PickingResultsPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyAddRunCommandDialog.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyNewProjectWizard.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyNewRefinementPackageWizard.$(OBJEXT):  \
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gui/cisTEM-UnblurResultsPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-ShowCTFResultsPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-PickingResultsDisplayPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-CTF1DPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-FindCTFPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-FindParticlesPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyVolumeAssetPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyResultsPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyAssetsPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-ActionsPanelSpa.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-ActionsPanelTm.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MySettingsPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyParticlePositionExportDialog.$(OBJEXT):  \
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gui/cisTEM-MyFrealignExportDialog.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyRelionExportDialog.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyRefinementPackageAssetPanel.$(OBJEXT):  \
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gui/cisTEM-MyRefine3DPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-MyRefine2DPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-ClassificationPlotPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-AbInitioPlotPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-Refine2DResultsPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-AngularDistributionPlotPanel.$(OBJEXT):  \
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core/cisTEM-particle_finder.$(OBJEXT): core/$(am__dirstamp) \
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gui/cisTEM-DisplayPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-ClassumSelectionCopyFromDialog.$(OBJEXT):  \
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gui/cisTEM-MyOverviewPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-AbInitio3DPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-AssetPickerComboPanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-AutoRefine3dPanel.$(OBJEXT): gui/$(am__dirstamp) \
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gui/cisTEM-DisplayRefinementResultsPanel.$(OBJEXT):  \
	gui/$(am__dirstamp) gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-ImportRefinementPackageWizard.$(OBJEXT):  \
	gui/$(am__dirstamp) gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-PopupTextDialog.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-ExportRefinementPackageWizard.$(OBJEXT):  \
	gui/$(am__dirstamp) gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-Generate3DPanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-LargeAngularPlotDialog.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-RefinementParametersDialog.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-Sharpen3DPanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-PlotCurvePanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-DistributionPlotDialog.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-RefineCTFPanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-ShowTemplateMatchResultsPanel.$(OBJEXT):  \
	gui/$(am__dirstamp) gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-MatchTemplatePanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-MatchTemplateResultsPanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-RefineTemplatePanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-CombineRefinementPackagesWizard.$(OBJEXT):  \
	gui/$(am__dirstamp) gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-RefineTemplateDevPanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-MyExperimentalPanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-AtomicCoordinatesAssetPanel.$(OBJEXT): gui/$(am__dirstamp) \
	gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-AtomicCoordinatesChooserDialog.$(OBJEXT):  \
	gui/$(am__dirstamp) gui/$(DEPDIR)/$(am__dirstamp)
gui/cisTEM-AtomicCoordinatesImportDialog.$(OBJEXT):  \
	gui/$(am__dirstamp) gui/$(DEPDIR)/$(am__dirstamp)

cisTEM$(EXEEXT): $(cisTEM_OBJECTS) $(cisTEM_DEPENDENCIES) $(EXTRA_cisTEM_DEPENDENCIES) 
	@rm -f cisTEM$(EXEEXT)
	$(AM_V_CXXLD)$(cisTEM_LINK) $(cisTEM_OBJECTS) $(cisTEM_LDADD) $(LIBS)
programs/guix_job_control/$(am__dirstamp):
	@$(MKDIR_P) programs/guix_job_control
	@: > programs/guix_job_control/$(am__dirstamp)
programs/guix_job_control/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/guix_job_control/$(DEPDIR)
	@: > programs/guix_job_control/$(DEPDIR)/$(am__dirstamp)
programs/guix_job_control/cisTEM_job_control-guix_job_control.$(OBJEXT):  \
	programs/guix_job_control/$(am__dirstamp) \
	programs/guix_job_control/$(DEPDIR)/$(am__dirstamp)

cisTEM_job_control$(EXEEXT): $(cisTEM_job_control_OBJECTS) $(cisTEM_job_control_DEPENDENCIES) $(EXTRA_cisTEM_job_control_DEPENDENCIES) 
	@rm -f cisTEM_job_control$(EXEEXT)
	$(AM_V_CXXLD)$(cisTEM_job_control_LINK) $(cisTEM_job_control_OBJECTS) $(cisTEM_job_control_LDADD) $(LIBS)
programs/combine_stacks_by_star/$(am__dirstamp):
	@$(MKDIR_P) programs/combine_stacks_by_star
	@: > programs/combine_stacks_by_star/$(am__dirstamp)
programs/combine_stacks_by_star/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/combine_stacks_by_star/$(DEPDIR)
	@: > programs/combine_stacks_by_star/$(DEPDIR)/$(am__dirstamp)
programs/combine_stacks_by_star/combine_stacks_by_star-combine_stacks_by_star.$(OBJEXT):  \
	programs/combine_stacks_by_star/$(am__dirstamp) \
	programs/combine_stacks_by_star/$(DEPDIR)/$(am__dirstamp)

combine_stacks_by_star$(EXEEXT): $(combine_stacks_by_star_OBJECTS) $(combine_stacks_by_star_DEPENDENCIES) $(EXTRA_combine_stacks_by_star_DEPENDENCIES) 
	@rm -f combine_stacks_by_star$(EXEEXT)
	$(AM_V_CXXLD)$(combine_stacks_by_star_LINK) $(combine_stacks_by_star_OBJECTS) $(combine_stacks_by_star_LDADD) $(LIBS)
programs/combine_via_max/$(am__dirstamp):
	@$(MKDIR_P) programs/combine_via_max
	@: > programs/combine_via_max/$(am__dirstamp)
programs/combine_via_max/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/combine_via_max/$(DEPDIR)
	@: > programs/combine_via_max/$(DEPDIR)/$(am__dirstamp)
programs/combine_via_max/combine_via_max-combine_via_max.$(OBJEXT):  \
	programs/combine_via_max/$(am__dirstamp) \
	programs/combine_via_max/$(DEPDIR)/$(am__dirstamp)

combine_via_max$(EXEEXT): $(combine_via_max_OBJECTS) $(combine_via_max_DEPENDENCIES) $(EXTRA_combine_via_max_DEPENDENCIES) 
	@rm -f combine_via_max$(EXEEXT)
	$(AM_V_CXXLD)$(combine_via_max_LINK) $(combine_via_max_OBJECTS) $(combine_via_max_LDADD) $(LIBS)
programs/console_test/$(am__dirstamp):
	@$(MKDIR_P) programs/console_test
	@: > programs/console_test/$(am__dirstamp)
programs/console_test/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/console_test/$(DEPDIR)
	@: > programs/console_test/$(DEPDIR)/$(am__dirstamp)
programs/console_test/console_test-console_test.$(OBJEXT):  \
	programs/console_test/$(am__dirstamp) \
	programs/console_test/$(DEPDIR)/$(am__dirstamp)

console_test$(EXEEXT): $(console_test_OBJECTS) $(console_test_DEPENDENCIES) $(EXTRA_console_test_DEPENDENCIES) 
	@rm -f console_test$(EXEEXT)
	$(AM_V_CXXLD)$(console_test_LINK) $(console_test_OBJECTS) $(console_test_LDADD) $(LIBS)
programs/convert_binary_to_star/$(am__dirstamp):
	@$(MKDIR_P) programs/convert_binary_to_star
	@: > programs/convert_binary_to_star/$(am__dirstamp)
programs/convert_binary_to_star/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/convert_binary_to_star/$(DEPDIR)
	@: > programs/convert_binary_to_star/$(DEPDIR)/$(am__dirstamp)
programs/convert_binary_to_star/convert_binary_to_star-convert_binary_to_star.$(OBJEXT):  \
	programs/convert_binary_to_star/$(am__dirstamp) \
	programs/convert_binary_to_star/$(DEPDIR)/$(am__dirstamp)

convert_binary_to_star$(EXEEXT): $(convert_binary_to_star_OBJECTS) $(convert_binary_to_star_DEPENDENCIES) $(EXTRA_convert_binary_to_star_DEPENDENCIES) 
	@rm -f convert_binary_to_star$(EXEEXT)
	$(AM_V_CXXLD)$(convert_binary_to_star_LINK) $(convert_binary_to_star_OBJECTS) $(convert_binary_to_star_LDADD) $(LIBS)
programs/convert_eer_to_mrc/$(am__dirstamp):
	@$(MKDIR_P) programs/convert_eer_to_mrc
	@: > programs/convert_eer_to_mrc/$(am__dirstamp)
programs/convert_eer_to_mrc/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/convert_eer_to_mrc/$(DEPDIR)
	@: > programs/convert_eer_to_mrc/$(DEPDIR)/$(am__dirstamp)
programs/convert_eer_to_mrc/convert_eer_to_mrc-convert_eer_to_mrc.$(OBJEXT):  \
	programs/convert_eer_to_mrc/$(am__dirstamp) \
	programs/convert_eer_to_mrc/$(DEPDIR)/$(am__dirstamp)

convert_eer_to_mrc$(EXEEXT): $(convert_eer_to_mrc_OBJECTS) $(convert_eer_to_mrc_DEPENDENCIES) $(EXTRA_convert_eer_to_mrc_DEPENDENCIES) 
	@rm -f convert_eer_to_mrc$(EXEEXT)
	$(AM_V_CXXLD)$(convert_eer_to_mrc_LINK) $(convert_eer_to_mrc_OBJECTS) $(convert_eer_to_mrc_LDADD) $(LIBS)
programs/convert_par_to_star/$(am__dirstamp):
	@$(MKDIR_P) programs/convert_par_to_star
	@: > programs/convert_par_to_star/$(am__dirstamp)
programs/convert_par_to_star/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/convert_par_to_star/$(DEPDIR)
	@: > programs/convert_par_to_star/$(DEPDIR)/$(am__dirstamp)
programs/convert_par_to_star/convert_par_to_star-convert_par_to_star.$(OBJEXT):  \
	programs/convert_par_to_star/$(am__dirstamp) \
	programs/convert_par_to_star/$(DEPDIR)/$(am__dirstamp)

convert_par_to_star$(EXEEXT): $(convert_par_to_star_OBJECTS) $(convert_par_to_star_DEPENDENCIES) $(EXTRA_convert_par_to_star_DEPENDENCIES) 
	@rm -f convert_par_to_star$(EXEEXT)
	$(AM_V_CXXLD)$(convert_par_to_star_LINK) $(convert_par_to_star_OBJECTS) $(convert_par_to_star_LDADD) $(LIBS)
programs/convert_star_to_binary/$(am__dirstamp):
	@$(MKDIR_P) programs/convert_star_to_binary
	@: > programs/convert_star_to_binary/$(am__dirstamp)
programs/convert_star_to_binary/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/convert_star_to_binary/$(DEPDIR)
	@: > programs/convert_star_to_binary/$(DEPDIR)/$(am__dirstamp)
programs/convert_star_to_binary/convert_star_to_binary-convert_star_to_binary.$(OBJEXT):  \
	programs/convert_star_to_binary/$(am__dirstamp) \
	programs/convert_star_to_binary/$(DEPDIR)/$(am__dirstamp)

convert_star_to_binary$(EXEEXT): $(convert_star_to_binary_OBJECTS) $(convert_star_to_binary_DEPENDENCIES) $(EXTRA_convert_star_to_binary_DEPENDENCIES) 
	@rm -f convert_star_to_binary$(EXEEXT)
	$(AM_V_CXXLD)$(convert_star_to_binary_LINK) $(convert_star_to_binary_OBJECTS) $(convert_star_to_binary_LDADD) $(LIBS)
programs/convert_tif_to_mrc/$(am__dirstamp):
	@$(MKDIR_P) programs/convert_tif_to_mrc
	@: > programs/convert_tif_to_mrc/$(am__dirstamp)
programs/convert_tif_to_mrc/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/convert_tif_to_mrc/$(DEPDIR)
	@: > programs/convert_tif_to_mrc/$(DEPDIR)/$(am__dirstamp)
programs/convert_tif_to_mrc/convert_tif_to_mrc-convert_tif_to_mrc.$(OBJEXT):  \
	programs/convert_tif_to_mrc/$(am__dirstamp) \
	programs/convert_tif_to_mrc/$(DEPDIR)/$(am__dirstamp)

convert_tif_to_mrc$(EXEEXT): $(convert_tif_to_mrc_OBJECTS) $(convert_tif_to_mrc_DEPENDENCIES) $(EXTRA_convert_tif_to_mrc_DEPENDENCIES) 
	@rm -f convert_tif_to_mrc$(EXEEXT)
	$(AM_V_CXXLD)$(convert_tif_to_mrc_LINK) $(convert_tif_to_mrc_OBJECTS) $(convert_tif_to_mrc_LDADD) $(LIBS)
programs/create_mask/$(am__dirstamp):
	@$(MKDIR_P) programs/create_mask
	@: > programs/create_mask/$(am__dirstamp)
programs/create_mask/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/create_mask/$(DEPDIR)
	@: > programs/create_mask/$(DEPDIR)/$(am__dirstamp)
programs/create_mask/create_mask-create_mask.$(OBJEXT):  \
	programs/create_mask/$(am__dirstamp) \
	programs/create_mask/$(DEPDIR)/$(am__dirstamp)

create_mask$(EXEEXT): $(create_mask_OBJECTS) $(create_mask_DEPENDENCIES) $(EXTRA_create_mask_DEPENDENCIES) 
	@rm -f create_mask$(EXEEXT)
	$(AM_V_CXXLD)$(create_mask_LINK) $(create_mask_OBJECTS) $(create_mask_LDADD) $(LIBS)
programs/ctffind/$(am__dirstamp):
	@$(MKDIR_P) programs/ctffind
	@: > programs/ctffind/$(am__dirstamp)
programs/ctffind/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/ctffind/$(DEPDIR)
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programs/ctffind/ctffind-ctffind.$(OBJEXT):  \
	programs/ctffind/$(am__dirstamp) \
	programs/ctffind/$(DEPDIR)/$(am__dirstamp)

ctffind$(EXEEXT): $(ctffind_OBJECTS) $(ctffind_DEPENDENCIES) $(EXTRA_ctffind_DEPENDENCIES) 
	@rm -f ctffind$(EXEEXT)
	$(AM_V_CXXLD)$(ctffind_LINK) $(ctffind_OBJECTS) $(ctffind_LDADD) $(LIBS)
programs/divide_two_stacks/$(am__dirstamp):
	@$(MKDIR_P) programs/divide_two_stacks
	@: > programs/divide_two_stacks/$(am__dirstamp)
programs/divide_two_stacks/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) programs/divide_two_stacks/$(DEPDIR)
	@: > programs/divide_two_stacks/$(DEPDIR)/$(am__dirstamp)
programs/divide_two_stacks/divide_two_stacks-divide_two_stacks.$(OBJEXT):  \
	programs/divide_two_stacks/$(am__dirstamp) \
	programs/divide_two_stacks/$(DEPDIR)/$(am__dirstamp)

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gui/cisTEM-gui_functions.obj: gui/gui_functions.cpp
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gui/cisTEM-my_controls.o: gui/my_controls.cpp
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gui/cisTEM-my_controls.obj: gui/my_controls.cpp
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gui/cisTEM-MyRenameDialog.o: gui/MyRenameDialog.cpp
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gui/cisTEM-MyRenameDialog.obj: gui/MyRenameDialog.cpp
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gui/cisTEM-BitmapPanel.o: gui/BitmapPanel.cpp
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gui/cisTEM-BitmapPanel.obj: gui/BitmapPanel.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(cisTEM_CPPFLAGS) $(CPPFLAGS) $(cisTEM_CXXFLAGS) $(CXXFLAGS) -MT gui/cisTEM-BitmapPanel.obj -MD -MP -MF gui/$(DEPDIR)/cisTEM-BitmapPanel.Tpo -c -o gui/cisTEM-BitmapPanel.obj `if test -f 'gui/BitmapPanel.cpp'; then $(CYGPATH_W) 'gui/BitmapPanel.cpp'; else $(CYGPATH_W) '$(srcdir)/gui/BitmapPanel.cpp'; fi`
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gui/cisTEM-PickingBitmapPanel.o: gui/PickingBitmapPanel.cpp
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gui/cisTEM-PickingBitmapPanel.obj: gui/PickingBitmapPanel.cpp
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gui/cisTEM-job_panel.o: gui/job_panel.cpp
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gui/cisTEM-job_panel.obj: gui/job_panel.cpp
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gui/cisTEM-ProjectX_gui.o: gui/ProjectX_gui.cpp
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gui/cisTEM-ProjectX_gui.obj: gui/ProjectX_gui.cpp
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gui/cisTEM-ResultsDataViewListCtrl.o: gui/ResultsDataViewListCtrl.cpp
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gui/cisTEM-ResultsDataViewListCtrl.obj: gui/ResultsDataViewListCtrl.cpp
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gui/cisTEM-MyMovieFilterDialog.o: gui/MyMovieFilterDialog.cpp
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gui/cisTEM-MyMovieFilterDialog.obj: gui/MyMovieFilterDialog.cpp
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gui/cisTEM-MainFrame.o: gui/MainFrame.cpp
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gui/cisTEM-MainFrame.obj: gui/MainFrame.cpp
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gui/cisTEM-MyAssetPanelParent.o: gui/MyAssetPanelParent.cpp
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gui/cisTEM-MyAssetPanelParent.obj: gui/MyAssetPanelParent.cpp
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gui/cisTEM-MyMovieAssetPanel.o: gui/MyMovieAssetPanel.cpp
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gui/cisTEM-MyMovieAssetPanel.obj: gui/MyMovieAssetPanel.cpp
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gui/cisTEM-MyImageAssetPanel.o: gui/MyImageAssetPanel.cpp
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gui/cisTEM-MyImageAssetPanel.obj: gui/MyImageAssetPanel.cpp
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gui/cisTEM-MyParticlePositionAssetPanel.o: gui/MyParticlePositionAssetPanel.cpp
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gui/cisTEM-MyParticlePositionAssetPanel.obj: gui/MyParticlePositionAssetPanel.cpp
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gui/cisTEM-MyVolumeChooserDialog.o: gui/MyVolumeChooserDialog.cpp
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gui/cisTEM-MyVolumeChooserDialog.obj: gui/MyVolumeChooserDialog.cpp
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gui/cisTEM-MovieImportDialog.o: gui/MovieImportDialog.cpp
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gui/cisTEM-MovieImportDialog.obj: gui/MovieImportDialog.cpp
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gui/cisTEM-MyImageImportDialog.o: gui/MyImageImportDialog.cpp
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gui/cisTEM-MyImageImportDialog.obj: gui/MyImageImportDialog.cpp
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gui/cisTEM-MyVolumeImportDialog.o: gui/MyVolumeImportDialog.cpp
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gui/cisTEM-MyVolumeImportDialog.obj: gui/MyVolumeImportDialog.cpp
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gui/cisTEM-ErrorDialog.o: gui/ErrorDialog.cpp
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gui/cisTEM-ErrorDialog.obj: gui/ErrorDialog.cpp
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gui/cisTEM-AlignMoviesPanel.o: gui/AlignMoviesPanel.cpp
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gui/cisTEM-AlignMoviesPanel.obj: gui/AlignMoviesPanel.cpp
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gui/cisTEM-MyRunProfilesPanel.o: gui/MyRunProfilesPanel.cpp
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gui/cisTEM-MyRunProfilesPanel.obj: gui/MyRunProfilesPanel.cpp
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gui/cisTEM-mathplot.o: gui/mathplot.cpp
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gui/cisTEM-mathplot.obj: gui/mathplot.cpp
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gui/cisTEM-MyMovieAlignResultsPanel.o: gui/MyMovieAlignResultsPanel.cpp
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gui/cisTEM-MyMovieAlignResultsPanel.obj: gui/MyMovieAlignResultsPanel.cpp
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gui/cisTEM-MyFindCTFResultsPanel.o: gui/MyFindCTFResultsPanel.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(cisTEM_CPPFLAGS) $(CPPFLAGS) $(cisTEM_CXXFLAGS) $(CXXFLAGS) -MT gui/cisTEM-MyFindCTFResultsPanel.o -MD -MP -MF gui/$(DEPDIR)/cisTEM-MyFindCTFResultsPanel.Tpo -c -o gui/cisTEM-MyFindCTFResultsPanel.o `test -f 'gui/MyFindCTFResultsPanel.cpp' || echo '$(srcdir)/'`gui/MyFindCTFResultsPanel.cpp
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gui/cisTEM-MyFindCTFResultsPanel.obj: gui/MyFindCTFResultsPanel.cpp
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gui/cisTEM-PickingResultsPanel.o: gui/PickingResultsPanel.cpp
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gui/cisTEM-PickingResultsPanel.obj: gui/PickingResultsPanel.cpp
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gui/cisTEM-MyAddRunCommandDialog.o: gui/MyAddRunCommandDialog.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(cisTEM_CPPFLAGS) $(CPPFLAGS) $(cisTEM_CXXFLAGS) $(CXXFLAGS) -MT gui/cisTEM-MyAddRunCommandDialog.o -MD -MP -MF gui/$(DEPDIR)/cisTEM-MyAddRunCommandDialog.Tpo -c -o gui/cisTEM-MyAddRunCommandDialog.o `test -f 'gui/MyAddRunCommandDialog.cpp' || echo '$(srcdir)/'`gui/MyAddRunCommandDialog.cpp
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gui/cisTEM-MyAddRunCommandDialog.obj: gui/MyAddRunCommandDialog.cpp
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gui/cisTEM-MyNewProjectWizard.o: gui/MyNewProjectWizard.cpp
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gui/cisTEM-MyNewProjectWizard.obj: gui/MyNewProjectWizard.cpp
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gui/cisTEM-MyNewRefinementPackageWizard.o: gui/MyNewRefinementPackageWizard.cpp
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gui/cisTEM-MyNewRefinementPackageWizard.obj: gui/MyNewRefinementPackageWizard.cpp
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gui/cisTEM-UnblurResultsPanel.o: gui/UnblurResultsPanel.cpp
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gui/cisTEM-UnblurResultsPanel.obj: gui/UnblurResultsPanel.cpp
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gui/cisTEM-ShowCTFResultsPanel.o: gui/ShowCTFResultsPanel.cpp
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gui/cisTEM-ShowCTFResultsPanel.obj: gui/ShowCTFResultsPanel.cpp
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gui/cisTEM-PickingResultsDisplayPanel.o: gui/PickingResultsDisplayPanel.cpp
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gui/cisTEM-PickingResultsDisplayPanel.obj: gui/PickingResultsDisplayPanel.cpp
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gui/cisTEM-CTF1DPanel.o: gui/CTF1DPanel.cpp
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gui/cisTEM-CTF1DPanel.obj: gui/CTF1DPanel.cpp
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gui/cisTEM-FindCTFPanel.o: gui/FindCTFPanel.cpp
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gui/cisTEM-FindCTFPanel.obj: gui/FindCTFPanel.cpp
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gui/cisTEM-FindParticlesPanel.o: gui/FindParticlesPanel.cpp
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gui/cisTEM-FindParticlesPanel.obj: gui/FindParticlesPanel.cpp
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gui/cisTEM-MyVolumeAssetPanel.o: gui/MyVolumeAssetPanel.cpp
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gui/cisTEM-MyVolumeAssetPanel.obj: gui/MyVolumeAssetPanel.cpp
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gui/cisTEM-MyResultsPanel.o: gui/MyResultsPanel.cpp
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gui/cisTEM-MyResultsPanel.obj: gui/MyResultsPanel.cpp
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gui/cisTEM-MyAssetsPanel.o: gui/MyAssetsPanel.cpp
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gui/cisTEM-MyAssetsPanel.obj: gui/MyAssetsPanel.cpp
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gui/cisTEM-ActionsPanelSpa.o: gui/ActionsPanelSpa.cpp
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gui/cisTEM-ActionsPanelSpa.obj: gui/ActionsPanelSpa.cpp
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gui/cisTEM-ActionsPanelTm.o: gui/ActionsPanelTm.cpp
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gui/cisTEM-ActionsPanelTm.obj: gui/ActionsPanelTm.cpp
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gui/cisTEM-MySettingsPanel.o: gui/MySettingsPanel.cpp
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gui/cisTEM-MySettingsPanel.obj: gui/MySettingsPanel.cpp
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gui/cisTEM-MyParticlePositionExportDialog.o: gui/MyParticlePositionExportDialog.cpp
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gui/cisTEM-MyParticlePositionExportDialog.obj: gui/MyParticlePositionExportDialog.cpp
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gui/cisTEM-MyFrealignExportDialog.o: gui/MyFrealignExportDialog.cpp
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gui/cisTEM-MyFrealignExportDialog.obj: gui/MyFrealignExportDialog.cpp
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gui/cisTEM-MyRelionExportDialog.o: gui/MyRelionExportDialog.cpp
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gui/cisTEM-MyRelionExportDialog.obj: gui/MyRelionExportDialog.cpp
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gui/cisTEM-MyRefinementPackageAssetPanel.o: gui/MyRefinementPackageAssetPanel.cpp
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gui/cisTEM-MyRefine3DPanel.o: gui/MyRefine3DPanel.cpp
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gui/cisTEM-MyRefine2DPanel.o: gui/MyRefine2DPanel.cpp
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gui/cisTEM-ClassificationPlotPanel.o: gui/ClassificationPlotPanel.cpp
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gui/cisTEM-ClassificationPlotPanel.obj: gui/ClassificationPlotPanel.cpp
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gui/cisTEM-AbInitioPlotPanel.o: gui/AbInitioPlotPanel.cpp
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gui/cisTEM-AbInitioPlotPanel.obj: gui/AbInitioPlotPanel.cpp
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gui/cisTEM-Refine2DResultsPanel.o: gui/Refine2DResultsPanel.cpp
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gui/cisTEM-AngularDistributionPlotPanel.o: gui/AngularDistributionPlotPanel.cpp
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core/cisTEM-particle_finder.o: core/particle_finder.cpp
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core/cisTEM-particle_finder.obj: core/particle_finder.cpp
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gui/cisTEM-DisplayPanel.o: gui/DisplayPanel.cpp
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gui/cisTEM-DisplayPanel.obj: gui/DisplayPanel.cpp
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gui/cisTEM-ClassumSelectionCopyFromDialog.o: gui/ClassumSelectionCopyFromDialog.cpp
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gui/cisTEM-ClassumSelectionCopyFromDialog.obj: gui/ClassumSelectionCopyFromDialog.cpp
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gui/cisTEM-MyOverviewPanel.o: gui/MyOverviewPanel.cpp
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gui/cisTEM-MyOverviewPanel.obj: gui/MyOverviewPanel.cpp
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gui/cisTEM-AbInitio3DPanel.o: gui/AbInitio3DPanel.cpp
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gui/cisTEM-AbInitio3DPanel.obj: gui/AbInitio3DPanel.cpp
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gui/cisTEM-AssetPickerComboPanel.o: gui/AssetPickerComboPanel.cpp
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gui/cisTEM-AssetPickerComboPanel.obj: gui/AssetPickerComboPanel.cpp
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gui/cisTEM-AutoRefine3dPanel.o: gui/AutoRefine3dPanel.cpp
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gui/cisTEM-AutoRefine3dPanel.obj: gui/AutoRefine3dPanel.cpp
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gui/cisTEM-DisplayRefinementResultsPanel.o: gui/DisplayRefinementResultsPanel.cpp
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gui/cisTEM-DisplayRefinementResultsPanel.obj: gui/DisplayRefinementResultsPanel.cpp
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gui/cisTEM-ImportRefinementPackageWizard.o: gui/ImportRefinementPackageWizard.cpp
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gui/cisTEM-ImportRefinementPackageWizard.obj: gui/ImportRefinementPackageWizard.cpp
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gui/cisTEM-PopupTextDialog.o: gui/PopupTextDialog.cpp
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gui/cisTEM-PopupTextDialog.obj: gui/PopupTextDialog.cpp
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gui/cisTEM-ExportRefinementPackageWizard.o: gui/ExportRefinementPackageWizard.cpp
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gui/cisTEM-ExportRefinementPackageWizard.obj: gui/ExportRefinementPackageWizard.cpp
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gui/cisTEM-Generate3DPanel.o: gui/Generate3DPanel.cpp
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gui/cisTEM-Generate3DPanel.obj: gui/Generate3DPanel.cpp
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gui/cisTEM-LargeAngularPlotDialog.o: gui/LargeAngularPlotDialog.cpp
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gui/cisTEM-LargeAngularPlotDialog.obj: gui/LargeAngularPlotDialog.cpp
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gui/cisTEM-RefinementParametersDialog.o: gui/RefinementParametersDialog.cpp
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gui/cisTEM-RefinementParametersDialog.obj: gui/RefinementParametersDialog.cpp
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gui/cisTEM-Sharpen3DPanel.o: gui/Sharpen3DPanel.cpp
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gui/cisTEM-Sharpen3DPanel.obj: gui/Sharpen3DPanel.cpp
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gui/cisTEM-PlotCurvePanel.o: gui/PlotCurvePanel.cpp
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gui/cisTEM-PlotCurvePanel.obj: gui/PlotCurvePanel.cpp
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gui/cisTEM-DistributionPlotDialog.o: gui/DistributionPlotDialog.cpp
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gui/cisTEM-DistributionPlotDialog.obj: gui/DistributionPlotDialog.cpp
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gui/cisTEM-RefineCTFPanel.o: gui/RefineCTFPanel.cpp
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gui/cisTEM-RefineCTFPanel.obj: gui/RefineCTFPanel.cpp
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gui/cisTEM-ShowTemplateMatchResultsPanel.o: gui/ShowTemplateMatchResultsPanel.cpp
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gui/cisTEM-ShowTemplateMatchResultsPanel.obj: gui/ShowTemplateMatchResultsPanel.cpp
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gui/cisTEM-MatchTemplatePanel.o: gui/MatchTemplatePanel.cpp
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gui/cisTEM-MatchTemplatePanel.obj: gui/MatchTemplatePanel.cpp
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gui/cisTEM-MatchTemplateResultsPanel.o: gui/MatchTemplateResultsPanel.cpp
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gui/cisTEM-MatchTemplateResultsPanel.obj: gui/MatchTemplateResultsPanel.cpp
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gui/cisTEM-RefineTemplatePanel.o: gui/RefineTemplatePanel.cpp
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gui/cisTEM-RefineTemplatePanel.obj: gui/RefineTemplatePanel.cpp
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gui/cisTEM-CombineRefinementPackagesWizard.o: gui/CombineRefinementPackagesWizard.cpp
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gui/cisTEM-CombineRefinementPackagesWizard.obj: gui/CombineRefinementPackagesWizard.cpp
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gui/cisTEM-RefineTemplateDevPanel.o: gui/RefineTemplateDevPanel.cpp
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gui/cisTEM-RefineTemplateDevPanel.obj: gui/RefineTemplateDevPanel.cpp
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gui/cisTEM-MyExperimentalPanel.o: gui/MyExperimentalPanel.cpp
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gui/cisTEM-MyExperimentalPanel.obj: gui/MyExperimentalPanel.cpp
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gui/cisTEM-AtomicCoordinatesAssetPanel.o: gui/AtomicCoordinatesAssetPanel.cpp
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gui/cisTEM-AtomicCoordinatesAssetPanel.obj: gui/AtomicCoordinatesAssetPanel.cpp
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	-rm -f gui/$(DEPDIR)/cisTEM-MyNewProjectWizard.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyNewRefinementPackageWizard.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyOverviewPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyParticlePositionAssetPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyParticlePositionExportDialog.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyRefine2DPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyRefine3DPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyRefinementPackageAssetPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyRefinementResultsPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyRelionExportDialog.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyRenameDialog.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyResultsPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyRunProfilesPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MySettingsPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyVolumeAssetPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyVolumeChooserDialog.Po
	-rm -f gui/$(DEPDIR)/cisTEM-MyVolumeImportDialog.Po
	-rm -f gui/$(DEPDIR)/cisTEM-PickingBitmapPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-PickingResultsDisplayPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-PickingResultsPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-PlotCurvePanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-PlotFSCPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-PopupTextDialog.Po
	-rm -f gui/$(DEPDIR)/cisTEM-ProjectX_gui.Po
	-rm -f gui/$(DEPDIR)/cisTEM-Refine2DResultsPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-RefineCTFPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-RefineTemplateDevPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-RefineTemplatePanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-RefinementParametersDialog.Po
	-rm -f gui/$(DEPDIR)/cisTEM-ResultsDataViewListCtrl.Po
	-rm -f gui/$(DEPDIR)/cisTEM-Sharpen3DPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-ShowCTFResultsPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-ShowTemplateMatchResultsPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-UnblurResultsPanel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-gui_functions.Po
	-rm -f gui/$(DEPDIR)/cisTEM-gui_globals.Po
	-rm -f gui/$(DEPDIR)/cisTEM-job_panel.Po
	-rm -f gui/$(DEPDIR)/cisTEM-mathplot.Po
	-rm -f gui/$(DEPDIR)/cisTEM-my_controls.Po
	-rm -f gui/$(DEPDIR)/test-PlotCurvePanel.Po
	-rm -f gui/$(DEPDIR)/test-mathplot.Po
	-rm -f programs/add_two_stacks/$(DEPDIR)/add_two_stacks-add_two_stacks.Po
	-rm -f programs/align_coordinates/$(DEPDIR)/align_coordinates-align_coordinates.Po
	-rm -f programs/align_symmetry/$(DEPDIR)/align_symmetry-align_symmetry.Po
	-rm -f programs/append_stacks/$(DEPDIR)/append_stacks-append_stacks.Po
	-rm -f programs/apply_gain_ref/$(DEPDIR)/apply_gain_ref-apply_gain_ref.Po
	-rm -f programs/apply_mask/$(DEPDIR)/apply_mask-apply_mask.Po
	-rm -f programs/applyctf/$(DEPDIR)/applyctf-applyctf.Po
	-rm -f programs/azimuthal_average/$(DEPDIR)/azimuthal_average-azimuthal_average.Po
	-rm -f programs/binarize/$(DEPDIR)/binarize-binarize.Po
	-rm -f programs/calc_occ/$(DEPDIR)/calc_occ-calc_occ.Po
	-rm -f programs/calculate_fsc/$(DEPDIR)/calculate_fsc-calculate_fsc.Po
	-rm -f programs/combine_stacks_by_star/$(DEPDIR)/combine_stacks_by_star-combine_stacks_by_star.Po
	-rm -f programs/combine_via_max/$(DEPDIR)/combine_via_max-combine_via_max.Po
	-rm -f programs/console_test/$(DEPDIR)/console_test-console_test.Po
	-rm -f programs/convert_binary_to_star/$(DEPDIR)/convert_binary_to_star-convert_binary_to_star.Po
	-rm -f programs/convert_eer_to_mrc/$(DEPDIR)/convert_eer_to_mrc-convert_eer_to_mrc.Po
	-rm -f programs/convert_par_to_star/$(DEPDIR)/convert_par_to_star-convert_par_to_star.Po
	-rm -f programs/convert_star_to_binary/$(DEPDIR)/convert_star_to_binary-convert_star_to_binary.Po
	-rm -f programs/convert_tif_to_mrc/$(DEPDIR)/convert_tif_to_mrc-convert_tif_to_mrc.Po
	-rm -f programs/create_mask/$(DEPDIR)/create_mask-create_mask.Po
	-rm -f programs/ctffind/$(DEPDIR)/ctffind-ctffind.Po
	-rm -f programs/divide_two_stacks/$(DEPDIR)/divide_two_stacks-divide_two_stacks.Po
	-rm -f programs/estimate_beamtilt/$(DEPDIR)/estimate_beamtilt-estimate_beamtilt.Po
	-rm -f programs/estimate_dataset_ssnr/$(DEPDIR)/estimate_dataset_ssnr-estimate_dataset_ssnr.Po
	-rm -f programs/extract_particles/$(DEPDIR)/extract_particles-extract_particles.Po
	-rm -f programs/fft/$(DEPDIR)/fft-fft.Po
	-rm -f programs/find_dqe/$(DEPDIR)/find_dqe-find_dqe.Po
	-rm -f programs/find_particles/$(DEPDIR)/find_particles-find_particles.Po
	-rm -f programs/gpu_devices/$(DEPDIR)/gpu_devices-gpu_devices.Po
	-rm -f programs/gpu_util_test/$(DEPDIR)/gpu_util_test-gpu_util_test.Po
	-rm -f programs/gui_test/$(DEPDIR)/gui_test-gui_test.Po
	-rm -f programs/guix_job_control/$(DEPDIR)/cisTEM_job_control-guix_job_control.Po
	-rm -f programs/invert_hand/$(DEPDIR)/invert_hand-invert_hand.Po
	-rm -f programs/invert_stack/$(DEPDIR)/invert_stack-invert_stack.Po
	-rm -f programs/local_resolution/$(DEPDIR)/local_resolution-local_resolution.Po
	-rm -f programs/local_resolution/$(DEPDIR)/local_resolution_finalize-local_resolution_finalize.Po
	-rm -f programs/local_resolution_filter/$(DEPDIR)/local_resolution_filter-local_resolution_filter.Po
	-rm -f programs/mag_distortion_correct/$(DEPDIR)/mag_distortion_correct-mag_distortion_correct.Po
	-rm -f programs/make_orth_views/$(DEPDIR)/make_orth_views-make_orth_views.Po
	-rm -f programs/make_size_map/$(DEPDIR)/make_size_map-make_size_map.Po
	-rm -f programs/make_template_result/$(DEPDIR)/make_template_result-make_template_result.Po
	-rm -f programs/match_template/$(DEPDIR)/match_template-match_template.Po
	-rm -f programs/merge2d/$(DEPDIR)/merge2d-merge2d.Po
	-rm -f programs/merge3d/$(DEPDIR)/merge3d-merge3d.Po
	-rm -f programs/montage/$(DEPDIR)/montage-montage.Po
	-rm -f programs/move_volume_xyz/$(DEPDIR)/move_volume_xyz-move_volume_xyz.Po
	-rm -f programs/multiply_two_stacks/$(DEPDIR)/multiply_two_stacks-multiply_two_stacks.Po
	-rm -f programs/niko_test/$(DEPDIR)/niko_test-niko_test.Po
	-rm -f programs/normalize_stack/$(DEPDIR)/normalize_stack-normalize_stack.Po
	-rm -f programs/prepare_stack/$(DEPDIR)/prepare_stack-prepare_stack.Po
	-rm -f programs/prepare_stack_classaverage/$(DEPDIR)/prepare_stack_classaverage-prepare_stack_classaverage.Po
	-rm -f programs/prepare_stack_matchtemplate/$(DEPDIR)/prepare_stack_matchtemplate-prepare_stack_matchtemplate.Po
	-rm -f programs/print_stack_statistics/$(DEPDIR)/print_stack_statistics-print_stack_statistics.Po
	-rm -f programs/project3d/$(DEPDIR)/project3d-project3d.Po
	-rm -f programs/projectx/$(DEPDIR)/cisTEM-projectx.Po
	-rm -f programs/reconstruct3d/$(DEPDIR)/reconstruct3d-reconstruct3d.Po
	-rm -f programs/refine2d/$(DEPDIR)/refine2d-refine2d.Po
	-rm -f programs/refine3d/$(DEPDIR)/refine3d-refine3d.Po
	-rm -f programs/refine_ctf/$(DEPDIR)/refine_ctf-refine_ctf.Po
	-rm -f programs/refine_template/$(DEPDIR)/refine_template-refine_template.Po
	-rm -f programs/refine_template_dev/$(DEPDIR)/refine_template_dev-refine_template_dev.Po
	-rm -f programs/remove_inf_and_nan/$(DEPDIR)/remove_inf_and_nan-remove_inf_and_nan.Po
	-rm -f programs/remove_outlier_pixels/$(DEPDIR)/remove_outlier_pixels-remove_outlier_pixels.Po
	-rm -f programs/remove_relion_stripes/$(DEPDIR)/remove_relion_stripes-remove_relion_stripes.Po
	-rm -f programs/resample/$(DEPDIR)/resample-resample.Po
	-rm -f programs/reset_mrc_header/$(DEPDIR)/reset_mrc_header-reset_mrc_header.Po
	-rm -f programs/resize/$(DEPDIR)/resize-resize.Po
	-rm -f programs/samples/$(DEPDIR)/samples_functional_testing-samples_functional_testing.Po
	-rm -f programs/samples/0_simple/$(DEPDIR)/samples_functional_testing-disk_io_image.Po
	-rm -f programs/samples/1_cpu_gpu_comparison/$(DEPDIR)/samples_functional_testing-resize_comparison.Po
	-rm -f programs/samples/common/$(DEPDIR)/samples_functional_testing-embedded_test_file.Po
	-rm -f programs/samples/common/$(DEPDIR)/samples_functional_testing-helper_functions.Po
	-rm -f programs/samples/common/$(DEPDIR)/samples_functional_testing-numeric_test_file.Po
	-rm -f programs/scale_with_mask/$(DEPDIR)/scale_with_mask-scale_with_mask.Po
	-rm -f programs/sharpen_map/$(DEPDIR)/sharpen_map-sharpen_map.Po
	-rm -f programs/simulate/$(DEPDIR)/simulate-scattering_potential.Po
	-rm -f programs/simulate/$(DEPDIR)/simulate-simulate.Po
	-rm -f programs/simulate/$(DEPDIR)/simulate-wave_function_propagator.Po
	-rm -f programs/subtract_from_stack/$(DEPDIR)/subtract_from_stack-subtract_from_stack.Po
	-rm -f programs/subtract_two_stacks/$(DEPDIR)/subtract_two_stacks-subtract_two_stacks.Po
	-rm -f programs/sum_all_eer_files/$(DEPDIR)/sum_all_eer_files-sum_all_eer_files.Po
	-rm -f programs/sum_all_mrc_files/$(DEPDIR)/sum_all_mrc_files-sum_all_mrc_files.Po
	-rm -f programs/sum_all_power_spectra/$(DEPDIR)/sum_all_power_spectra-sum_all_power_spectra.Po
	-rm -f programs/sum_all_tif_files/$(DEPDIR)/sum_all_tif_files-sum_all_tif_files.Po
	-rm -f programs/symmetry_expand_stack_and_par/$(DEPDIR)/symmetry_expand_stack_and_par-symmetry_expand_stack_and_par.Po
	-rm -f programs/unblur/$(DEPDIR)/unblur-unblur.Po
	-rm -f programs/warp_to_cistem/$(DEPDIR)/warp_to_cistem-warp_to_cistem.Po
	-rm -f Makefile
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pdf: pdf-am

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